CmUC08G143480 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC08G143480
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	RNA-binding protein 7-like isoform X1
Location	CmU531Chr08: 1710989 .. 1718008 (+)
RNA-Seq Expression	CmUC08G143480
Synteny	CmUC08G143480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGTATTTGAAAACATAAAAAGGGCTGTCCGTACGAAAATCCATTTTCAGAAAATTCCACTTCTCTCTCTCGTGAAACTTCCAGCCCTCAACCCCCTCCCGATCTGCTGTTTTTCTCTTCTCCGGCCAGTATTTCCAAGAGCAGCTCACGCGATTAACCCTTCTGATCTGCTGTTTTTCTCTTCTCGCGGCGGAGGCGGCGGCGCCGTTTTACTAACCTCCTTCTGATTTACCCCTTCCTGGCAATTGCCGAGCTACACTAGCCCTCTTCGTCGACGCTGCTCAAACAGAAGGCGGTCCTCACACCTTTCGTTTTCCAGCGGCGCTGCACCCTACAAAGTGACTCCTTTCCTGCAACCGACGCACGAGCACAACGCAGCCGACCTATCAAACCCACCCAATCGGACTCGAGCCAACAGCATTTTAAAACTCGGAGGTCAGCTTTCGGCGGCTGCCCACGCTTCACTGGGCCGTGAAACGGACTACTCATAGGCTGTAGTGTTCGATTTTGTGAAATCGAACACAATCAAAACACTTTTCGACTCCTCTCGGGTAAGATTTAGTGAGTAAGGACGCTCTAAATTCCTTTCGAACTTGAATAAAGTGCATTAGAATTGTCCCCAACACTTGAGAGCTCTTGTTTGTAGAAACTGCGATATTACCAATTTGATATACTAATTGGAAATACGGTTGAAATATAAACCACAATAGGAAAATCGAAATCGAAGCAGTAATAAATAGAGGTTTATTGGCTTACTGTCTTTACCGTTTTCCTCTTTCTCCTTTATCCTTACCTTTCCTTTTTTCTTTCTGAAACTCCGGTCTAGGGTTTTGCATCTGAACTTGCAGAACAATCATGTCAGGAAGGTCAGATGGATGCACCATTTACGTTGGTATGTTTGTTTTTATCTTTATCCATCTTAATTTATGTTTTCTGTATTCTAATTTGTTGAACTCTTTTGTTCTCCTTTCATGAGGATTCTGTTTGCATTTTAAGCTTCGTGTTTTTACTTCTGTGAAGTTTCGTATGAAAATTGTGCTTTTGGGTGGTTGGTTTTATATTAGTTGTGTTTATTTCTTTCTATTATGTTTTACTATTGGACCTATATGACATATGACATATTTATTTGTTCTCTCACAAAGCTATGCTTAGATTTTTTGTTGGCGGGTTTCATAATTGAACAAAAAGGATTGGGTTATTTGCTGGATTTCTTACTCTCCAACTTTTTCCTCTCTTGTAAATATGTTTGATTTCTCTTTATAACATAATTGTTTGCTGCCTTTGGTGAAGAGGGTTGAAAGTTAACTTATTTTCTTTTTGATTTTCATAGATCTCTTATATTTTCTTCGTTTTTGCTTTAACTGGCACATCTAAATTTTCACTTTCACCATTGTCTTCAATCTGCTTCTTTGTGGGCTTTACCCCACTTGAGTACTGCTGCCCGTTTCTCTGTAATATTTCCTTAACATAACTGGTTGTTCAGTGAACTTACTTTTTTGGGGAACTTTTCTTCCCCTTTTATATTTTGATACAATATTATCTATTAAATTCTAAGGATGCAGCCTACTTGAATTTAGATACCACATTTTCTTCTGAATTTGATTTTGTTACTTACTTCACTTTTTGTAGGTAATTTGGATGAAAGGGTAAGTGACAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCTAAAGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAACCGTACCTTGAAGTTTGCAGTATGTCATTTTTATTTCTTTCTCAACGAAAATTTTTCATTTTATCTCTGTTTTTCTTGATGAACTCTGTTTTCTAACTTATACACTTGCTTTATGATTCAGTATTCATGTCATAATAATCTCCTCTAATTTGACCCATTTTGATTAGTAACTCACGTTAGATATATATAGAGTCTATTAACATGTGTGGTGCATTTGAAATTTTAGACCTTTTGTCTTATTATCGTATAATTTAATGAACTTAATTAAAAGTCAATGATTAAAATGTCTCAGAAGAATAGCATATGATTTGATTTTATACTAAAGTTTATATGTACTACTACTAAATATATATTAACTAATGAAGTAATCTTTGTAATCATTTAGAATAGTCCAAAAATTGTCCTTCATATGCCTTATGCAGTATATTGCATACCTTTTTTGAAGTTTTAGAAATTAGATTACATTCCAATTGTATCACCTTTTCTTGTTATCACCAATTATATTACATTCCAAATATATTCATGGCTCACGATAAATTTAATCTAGTTTGGCGTATATCACCAGAATTTCAAATGACTTGGTTAGAAAGCTTTTGGCTCTCCAATTTTAGAGGATGAACATGAGGATTAGTACATTATTGAAAAACAGAAAGAAATGGAAAATATAATTTATTGACACTACTTGAGTACTCTAATGACTTCATTGAAGAACAGAAAAAATTATCGGAGTTGGGAGAATGAATGTAGATGCTTAAACATGATTAGAAAATCGAAACAAGTCTAAATATATAATTTCATCTTTTTTTACAAAAATGATATCTATTAGTTTTCTAAAAAGTGATGTCTTTTCTGGTTTTGTAAATAAATAAGAAGAATATCAACAATGAAAAGTAAAACAGATACAAAGATTCCTTTTCCAGTTATAGATGGTTTCCTGATATATTATTGTTTACTGGCAGTCATACATTCCAATTTTATGATCTTTTTCTTTTGGAAAAGAAAAAAACAAGATCGTGGAATCTCCTTGTATCAGCCCTGATTGTGTGGTGAGCTATTTTGTTAAGGGAATGTGTAAGGCCCCTAGTTATAGAATTAATAGGAGTATTAGTAGAATATTAGTATGGTTATTAGTTGGGGCATATTAGTAAGTTGGTTAGGTCTTTTTGCTATAAATGTTGGAGAAAGGTTTGAAGAATTTTAGGGATATTTGTACGGATGGCCCGCCTCGAAATTTGGCCTCAAATTAAAAAACACTCGAAATTTAGCTTTCTGCTGATGTCATCATTGTGCGAAATAACCACTTTAACCCTTCTTCCTTCTCTTCTTCCGCCATTTCGCTCCCGTTGTTTTTTTTTTCTTTTTTGTTCATCGTTTTTTTTGCTTTTCTTCGTCATCCTTCTTCAGGCATCTTCTTCGTCTTTTTTCATGCGTCTTTCTAGTAAGACGATTTTCGGAGATGTCGCTCTATTTATTTTAATTTTTTTTTTCATTTTCAACGGTACCAACGAGACTTTCATAATCAAAATGAGAAGAAGAAAACGACGCTGATCAGAAAGAGCGAGATCAGCGAGAGCGAGAGCAGCGAGATCAGCAAGAGCGAGATTGACGAGAGCGAGAGCGACTTGTTCTTGTTCTCGTTCCACACCAAACGCTACTTGTTCTTGTTCAACGTCAAAAGCACGATTTTGTTCTCGCCAGCTTTCTGCTGCTACTAATTAATGATCCTGTACGAATTTCCCATAAAATGCAAACAATTCTTACATTAAATTCAAAACAAGTTAAGAAGGATTGAATGAATGAATGTGTATATAAAAAGAGATCAGCGTGAGCGAGAACGAGATCAGCGAAAGCGAGAGCGAGATTGACGAGAGCGAGAGCGAGTTGGATTAGTCATTTAAGAGTGATTGTGAGATCATTAGTCTCGCTTCCCATTCACATGCCTACAAATACATCTGAATGGTCGTTCTCGGTCTCGTTCCACACTAGACACACGTTATTGTTTAAAAATAAGTCTAAAATGTTTTTCCAAACGTCGCTCTTTCGAGTTCTCTTGCTTCCAAATCTCTCTCTCGTTTCTTCTTCTTCTTCTGTGTGTTCTTGCTTTTCCCATATTCTCGCTCTTGTTGCTTCTTGTTGCTTCCCCCAAAATCTCTCTCTCGTTTCTTCTTGCTTCCCTGAATTCTCTCTCGTTCTAAATCTCTCTCTCATTTCACTATTGGTCTTAGGCTTGCTGGTGGTGGTCTCAGGCTTGTTGCTTCCCTTGAAATCTCTCTCTCGTTTCATTATTGGTCTCAGGCTGGGTGGTGGTGGTCTTAGGCTTGATGGTGGTGGTGGTGGTGATCTCAGGCTGGGTGGGGGAAGCAAGAAGAAACGAGAGAGAGATTTTGGGGGAAGCAACAAGAAGCAAAGAGAGCGAGAATATGGGAAAAGCAAGAACACATGGAAGAAGAAGAAACGAGAGAGAGATTTGGGGGGAAGCAAGAGAATTCGAAAGAGAGACGTTTGGAAAAACATTTGAGACTAATTTTTAAACAATAACATGCGTCTGGTGTGGAACGAAACCGAGAACGACCAGCGAGATGTATTTGTAGGCACGCAAATGGGAAGCAAGACTAATGATCTCACAATCACTCTTAAATGACTAATCTAGCTCGCTCTTGCTCTCATCAATCTCGCTCTCGTTCATGTTGATCTCTTTTTAGATACACATTCATTCATTCAATCCTTCTTAACTTGTTTTGAATTAAATGTCAGAATTGTTTGCATTTTATGGGAAATTCGTATAGGATCATTAATTAGCAGCAGCAGGCTGGCGGGAACGAAATCGTGCTCCTGACGTTGAACGAGAACGAGTAGCGTCTGGTGTAGAACGAGTCGCCCTCGCTCTCGTCAATCTCGCTCTTTCTGATCAGCGTCGTTTTCTTCTTCTCATTCTGATTACGAAAGTCTTGTTGGTACCGTTAAATATGAAAAAAAAAGAAATAGAGCGACATCTTCGGAAATCGTCTCTCTGGGAAGACGAAGAAGATGCTTGAAGAAGGACGACGAAGAAAAGCAGAAAAAACGATGAACAAAAAAAAAACAGTGGGAGCGAAATGGCGGAAGAAGGGTTAAAGTGGTAATTTCGCAGAGTGGTGACATCAGCAGAAAGCCAAATTTCGAGTGTTTTTGAATTTGAGGGCAAATTTCAAGTGGACCTCTCAAAATGAGCCATCCGTACAAATATCCCAGAATTTTATGTGGGATTTCCTAATTGGGAATTTGGGAGAGGATTCTCAGCCCTCTAGAATGTGTTGAGGTATATTGTAATTTCTTCATTGATATTGCAATATAATTATATCTTTTAGTTTTCTTGTTTGTTCTTGAGTCCACTTGTTAGGAGGCACAGAATGACACATTGTTTTTGACTTTGTGCAAACAGGTATCTGGGCAAGACAAGCCTTCAGCAGTTAGCTATGCAATCACTTCATCATCAAATATATCTAATAAATCAAGGTCGCAGATTGTTCCGGGTTGCTCTAATGAAATATCTCAGTATTCCAATCGCTTTTCCACATCATGTAAATTTACAACATATTCTGAGAACCATCTAGAAGGTGATTTTTCTTTATTTTTGTCTTTGCTTTGTTAGTTTGCTAAGAAATTGTGTATTTTTACTTTATTGGCCTTTCCCACGTAGTTCAACAAACTTTTGTTTCTTTTATTCAGCGCTTCTTTACCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGCCAGAGGTATTCTGGGACAACTTTGGGTAGCCTTAGCCAACCTAAATCACGCCGCCATGATACGAGTTTTCCAGTAGATTATCCTCCTTACGACCTTTTGAACTAATGCAGCCAGTGCCTTCCATTCTGGTTAATCTAATCTTAATGGCAATATAAGTCTTAGGAAAAATTGGACCTCTTAGATGGATGTAGAAGGTTTGGTGGAAAATGATACGATATTTGCTATGGAGCATGCTCTTTATGTTATTGAATACATAATCATTTTGTAGGTGTATGTGTTCATGTGATTTGGCTGTGTTGTTGTAAAAATTATACTCGATACCTAACTAAGTATTGTAATCTATTTTATTAAATATTTAGATTTTCTTTAATTCATGTTTAATGTTATGGAATTATAAATGATAATTTCATGGTGACTGAAAGGAATAGCTTCTGGTTTGTGTATATTGAGTATTTACTTTTTTCTGAAGTGTTATACTTGAGCCAATATATAAATATTATTAACATTTTGGTTTTAGTGAAGTGAAATCTAAATTACATGTAAATCCAGGTATTTTGGTTTGAGTTTATTGCCATTTCTGCGTTTTGGTATGCCTGTACTGAAATTCTTGGTAGGTTTTAACTGTAAGGTATTGTCTAACTTTGCCCACTTAACTTTTTGAAAACATTTTAAAAGTAGATTACAAAGAAAATTCATAAATGTATGGCATGCTTGAAATTTTCAAGAAGTAATTTCTTTTTTAAAAGAACTAATGATTGAAAATTTACTTCTTTGAGGGAGATGGTGCTTTCTAGTCCTGAGAGACATTCATATTCTTGTGAGATAGTAGATAAAACATTTGTTGATCAGCATAGTGGCAGTTCTCTTTCAGAGGATCATTACAGGGGTTTCTATCAAAATTCAAGAATCTAGATACCTCATTTCTCTCATCTGGGCTCAAAGTTCTTATTTGGAATTGTGAGTCAACATGAGGGGATGAGGATTTGAACTTGAATCTCCAACTTTAAGGGAAGGGAGTACATAATGATTACCTTGGAGTTATGCTCACTTTAGCAATTCTATTTGGAGTTTCCCATTAGTTTTACTATTCTTTGTATCATAAGAAGAATTTGTTCATTTTCTTTTATTTTACCTTTCGTATTGGTGTTGTAAAATATATACGTTTGTTTGTGTATGCTAGATGATCTATCTTTGGCTGCCTTGTAAAGATTTGGGATAAGTTGATGTAGTCATAGTTTTAGTTACCAAGTAGTGTTTTTAAGTGAAAACCTTTTGTATAGACAATAAAATCACTCTGTTTATAATCCAGCTTTAATAGGACCTCCCGAAGCTTTTTGATTTTGTGCAATCACTGAGAATTTGAATTAAAGGAGGTTCTATAATGGTGATCGGTATAAGCATAGTACATCATA

mRNA sequence

TTCGTATTTGAAAACATAAAAAGGGCTGTCCGTACGAAAATCCATTTTCAGAAAATTCCACTTCTCTCTCTCGTGAAACTTCCAGCCCTCAACCCCCTCCCGATCTGCTGTTTTTCTCTTCTCCGGCCAGTATTTCCAAGAGCAGCTCACGCGATTAACCCTTCTGATCTGCTGTTTTTCTCTTCTCGCGGCGGAGGCGGCGGCGCCGTTTTACTAACCTCCTTCTGATTTACCCCTTCCTGGCAATTGCCGAGCTACACTAGCCCTCTTCGTCGACGCTGCTCAAACAGAAGGCGGTCCTCACACCTTTCGTTTTCCAGCGGCGCTGCACCCTACAAAGTGACTCCTTTCCTGCAACCGACGCACGAGCACAACGCAGCCGACCTATCAAACCCACCCAATCGGACTCGAGCCAACAGCATTTTAAAACTCGGAGGTCAGCTTTCGGCGGCTGCCCACGCTTCACTGGGCCGTGAAACGGACTACTCATAGGCTGTAGTGTTCGATTTTGTGAAATCGAACACAATCAAAACACTTTTCGACTCCTCTCGGGGTTTTGCATCTGAACTTGCAGAACAATCATGTCAGGAAGGTCAGATGGATGCACCATTTACGTTGGTAATTTGGATGAAAGGGTAAGTGACAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCTAAAGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAACCGTACCTTGAAGTTTGCAGTATGCTTGCTGGTGGTGGTCTCAGGCTTGTTGCTTCCCTTGAAATCTCTCTCTCGTTTCATTATTGGTCTCAGGCTGGGTGGTGGTGGTCTTAGGCTTGATGGTGGTGGTGGTGGTGATCTCAGGCTGGGTGGGGGAAGCAAGAAGAAACGAGAGAGAGATTTTGGGGGAAGCAACAAGAAGCAAAGAGAGCGAGAATATGGGAAAAGCAAGAACACATGGAAGAAGAAGAAACGAGAGAGAGATTTGGGGGGAAGCAAGAGAATTCGAAAGAGAGACGTATCTGGGCAAGACAAGCCTTCAGCAGTTAGCTATGCAATCACTTCATCATCAAATATATCTAATAAATCAAGGTCGCAGATTGTTCCGGGTTGCTCTAATGAAATATCTCAGTATTCCAATCGCTTTTCCACATCATGTAAATTTACAACATATTCTGAGAACCATCTAGAAGCGCTTCTTTACCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGCCAGAGGTATTCTGGGACAACTTTGGGTAGCCTTAGCCAACCTAAATCACGCCGCCATGATACGAGTTTTCCAGTAGATTATCCTCCTTACGACCTTTTGAACTAATGCAGCCAGTGCCTTCCATTCTGGTTAATCTAATCTTAATGGCAATATAAGTCTTAGGAAAAATTGGACCTCTTAGATGGATGTAGAAGGTTTGGTGGAAAATGATACGATATTTGCTATGGAGCATGCTCTTTATGTTATTGAATACATAATCATTTTGTAGGTGTATGTGTTCATGTGATTTGGCTGTGTTGTTGTAAAAATTATACTCGATACCTAACTAAGTATTGTAATCTATTTTATTAAATATTTAGATTTTCTTTAATTCATGTTTAATGTTATGGAATTATAAATGATAATTTCATGGTGACTGAAAGGAATAGCTTCTGGTTTGTGTATATTGAGTATTTACTTTTTTCTGAAGTGTTATACTTGAGCCAATATATAAATATTATTAACATTTTGGTTTTAGTGAAGTGAAATCTAAATTACATGTAAATCCAGGTATTTTGGTTTGAGTTTATTGCCATTTCTGCGTTTTGGTATGCCTGTACTGAAATTCTTGGTAGGTTTTAACTGTAAGGTATTGTCTAACTTTGCCCACTTAACTTTTTGAAAACATTTTAAAAGTAGATTACAAAGAAAATTCATAAATGTATGGCATGCTTGAAATTTTCAAGAAGTAATTTCTTTTTTAAAAGAACTAATGATTGAAAATTTACTTCTTTGAGGGAGATGGTGCTTTCTAGTCCTGAGAGACATTCATATTCTTGTGAGATAGTAGATAAAACATTTGTTGATCAGCATAGTGGCAGTTCTCTTTCAGAGGATCATTACAGGGGTTTCTATCAAAATTCAAGAATCTAGATACCTCATTTCTCTCATCTGGGCTCAAAGCAATTCTATTTGGAGTTTCCCATTAGTTTTACTATTCTTTGTATCATAAGAAGAATTTGTTCATTTTCTTTTATTTTACCTTTCGTATTGGTGTTGTAAAATATATACGTTTGTTTGTGTATGCTAGATGATCTATCTTTGGCTGCCTTGTAAAGATTTGGGATAAGTTGATGTAGTCATAGTTTTAGTTACCAAGTAGTGTTTTTAAGTGAAAACCTTTTGTATAGACAATAAAATCACTCTGTTTATAATCCAGCTTTAATAGGACCTCCCGAAGCTTTTTGATTTTGTGCAATCACTGAGAATTTGAATTAAAGGAGGTTCTATAATGGTGATCGGTATAAGCATAGTACATCATA

Coding sequence (CDS)

ATGTCAGGAAGGTCAGATGGATGCACCATTTACGTTGGTAATTTGGATGAAAGGGTAAGTGACAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCTAAAGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAACCGTACCTTGAAGTTTGCAGTATGCTTGCTGGTGGTGGTCTCAGGCTTGTTGCTTCCCTTGAAATCTCTCTCTCGTTTCATTATTGGTCTCAGGCTGGGTGGTGGTGGTCTTAGGCTTGATGGTGGTGGTGGTGGTGATCTCAGGCTGGGTGGGGGAAGCAAGAAGAAACGAGAGAGAGATTTTGGGGGAAGCAACAAGAAGCAAAGAGAGCGAGAATATGGGAAAAGCAAGAACACATGGAAGAAGAAGAAACGAGAGAGAGATTTGGGGGGAAGCAAGAGAATTCGAAAGAGAGACGTATCTGGGCAAGACAAGCCTTCAGCAGTTAGCTATGCAATCACTTCATCATCAAATATATCTAATAAATCAAGGTCGCAGATTGTTCCGGGTTGCTCTAATGAAATATCTCAGTATTCCAATCGCTTTTCCACATCATGTAAATTTACAACATATTCTGAGAACCATCTAGAAGCGCTTCTTTACCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGCCAGAGGTATTCTGGGACAACTTTGGGTAGCCTTAGCCAACCTAAATCACGCCGCCATGATACGAGTTTTCCAGTAGATTATCCTCCTTACGACCTTTTGAACTAA

Protein sequence

MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSLSRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN

Homology

[Close]

BLAST of CmUC08G143480 vs. NCBI nr
Match: XP_038890192.1 (RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890193.1 RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890194.1 RNA-binding protein 7-like isoform X1 [Benincasa hispida])

HSP 1 Score: 306.2 bits (783), Expect = 3.0e-79
Identity = 178/286 (62.24%), Postives = 182/286 (63.64%), Query Frame = 0


Query: 1   MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS+GCTIYVGN DERVS+RVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSLSRFIIGLRLGGGGLRLDGGG 120
           IANYAVKLFSGLVNLHNRTLKFA                                     
Sbjct: 61  IANYAVKLFSGLVNLHNRTLKFA------------------------------------- 120

Query: 121 GGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQ 180
                                                                   VSGQ
Sbjct: 121 --------------------------------------------------------VSGQ 180

Query: 181 DKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPG 240
           DKPS  S AITSSS ISNKSRSQI  G SNEISQYSNRFSTSC+FTTY ENHLEALLYPG
Sbjct: 181 DKPSPGSNAITSSS-ISNKSRSQIFSGYSNEISQYSNRFSTSCRFTTYPENHLEALLYPG 192

Query: 241 LVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVD 287
           LVNQYNGYGSHLDNYNKEYSQRYSGTTL SL+QPKSRR DTSFPVD
Sbjct: 241 LVNQYNGYGSHLDNYNKEYSQRYSGTTLDSLNQPKSRRRDTSFPVD 192

[Close]

BLAST of CmUC08G143480 vs. NCBI nr
Match: XP_008459559.1 (PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo] >XP_008459560.1 PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo])

HSP 1 Score: 300.8 bits (769), Expect = 1.3e-77
Identity = 174/290 (60.00%), Postives = 179/290 (61.72%), Query Frame = 0


Query: 1   MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSLSRFIIGLRLGGGGLRLDGGG 120
           IANYAVKLFSGLVNLH RTLKFA                                     
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFA------------------------------------- 120

Query: 121 GGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQ 180
                                                                   VSGQ
Sbjct: 121 --------------------------------------------------------VSGQ 180

Query: 181 DKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPG 240
           DKPS VS AITSS      SRSQIV G SNEISQYSNRFS+SC+F TY ENHLEALL PG
Sbjct: 181 DKPSPVSNAITSS------SRSQIVSGYSNEISQYSNRFSSSCRFPTYPENHLEALLNPG 191

Query: 241 LVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPY 291
           LVNQ+NGYGSHLDNYNKEYSQRYSGT L S +QPKSRRHD+SFPVDYPPY
Sbjct: 241 LVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY 191

[Close]

BLAST of CmUC08G143480 vs. NCBI nr
Match: XP_023523852.1 (RNA-binding protein 7-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 291.2 bits (744), Expect = 1.0e-74
Identity = 164/294 (55.78%), Postives = 180/294 (61.22%), Query Frame = 0


Query: 1   MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSLSRFIIGLRLGGGGLRLDGGG 120
           I NYAVKLFSGLV LHNRTLKFA                                     
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFA------------------------------------- 120

Query: 121 GGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQ 180
                                                                   VSGQ
Sbjct: 121 --------------------------------------------------------VSGQ 180

Query: 181 DKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPG 240
           DKPS  S AITSSSNIS+KSRSQIVPG SNEIS YSNR S SC+F+ Y ENHLEA  YPG
Sbjct: 181 DKPSPSSSAITSSSNISHKSRSQIVPGYSNEISSYSNRLSNSCRFSAYRENHLEAPPYPG 201

Query: 241 LVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN 295
           LVNQ NGYGS+ D++N +YSQRYSGT L S + PKSRRHDTS+PV YPPY+LLN
Sbjct: 241 LVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYPVHYPPYELLN 201

[Close]

BLAST of CmUC08G143480 vs. NCBI nr
Match: XP_022973396.1 (RNA-binding protein 7-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 290.4 bits (742), Expect = 1.7e-74
Identity = 164/294 (55.78%), Postives = 180/294 (61.22%), Query Frame = 0


Query: 1   MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSLSRFIIGLRLGGGGLRLDGGG 120
           I NYAVKLFSGLV LHNRTLKFA                                     
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFA------------------------------------- 120

Query: 121 GGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQ 180
                                                                   VSGQ
Sbjct: 121 --------------------------------------------------------VSGQ 180

Query: 181 DKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPG 240
           DKPS  S AITSSSNIS+KSRSQIVPG SNEIS YSNR S SC+F+ Y ENHLEA  YPG
Sbjct: 181 DKPSPSSSAITSSSNISHKSRSQIVPGYSNEISSYSNRLSNSCRFSAYPENHLEAPPYPG 201

Query: 241 LVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN 295
           LVNQ NGYGS+ D++N +YSQRYSGT L S + PKSRRHDTS+PV YPPY+LLN
Sbjct: 241 LVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYPVYYPPYELLN 201

[Close]

BLAST of CmUC08G143480 vs. NCBI nr
Match: XP_022932504.1 (RNA-binding protein 7 isoform X1 [Cucurbita moschata])

HSP 1 Score: 289.3 bits (739), Expect = 3.8e-74
Identity = 163/294 (55.44%), Postives = 180/294 (61.22%), Query Frame = 0


Query: 1   MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSLSRFIIGLRLGGGGLRLDGGG 120
           I NYAVKLFSGLV LHNRTLKFA                                     
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFA------------------------------------- 120

Query: 121 GGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQ 180
                                                                   VSGQ
Sbjct: 121 --------------------------------------------------------VSGQ 180

Query: 181 DKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPG 240
           DKPS  S AITSSSNIS+KSRSQIVPG SNEIS YSNR S SC+F+ Y ENH+EA  YPG
Sbjct: 181 DKPSPSSSAITSSSNISHKSRSQIVPGYSNEISSYSNRLSNSCRFSAYPENHVEAPPYPG 201

Query: 241 LVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN 295
           LVNQ NGYGS+ D++N +YSQRYSGT L S + PKSRRHDTS+PV YPPY+LLN
Sbjct: 241 LVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYPVYYPPYELLN 201

[Close]

BLAST of CmUC08G143480 vs. ExPASy Swiss-Prot
Match: Q15427 (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-13
Identity = 32/81 (39.51%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R+   T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHNRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of CmUC08G143480 vs. ExPASy Swiss-Prot
Match: Q8QZY9 (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-13
Identity = 32/81 (39.51%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R+   T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHNRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of CmUC08G143480 vs. ExPASy Swiss-Prot
Match: Q6AYL5 (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-13
Identity = 32/81 (39.51%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R+   T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHNRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of CmUC08G143480 vs. ExPASy Swiss-Prot
Match: Q09442 (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-12
Identity = 31/78 (39.74%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 4  RSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R+   TIYVG LDE+VS+ +L+++++QAG VV +++P+D+ +   +GF F E+  EE A+
Sbjct: 9  RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68

Query: 64 YAVKLFSGLVNLHNRTLK 82
          YA+K+ + ++ L+ + +K
Sbjct: 69 YAIKILN-MIKLYGKPIK 85

[Close]

BLAST of CmUC08G143480 vs. ExPASy Swiss-Prot
Match: O14102 (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 4.8e-11
Identity = 29/67 (43.28%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 4  RSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R+   TIY+GNLDE+V+D +L+++ +QAG VV++HIPRD+      GF F E+  E+   
Sbjct: 7  RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66

Query: 64 YAVKLFS 71
          YA ++ +
Sbjct: 67 YACQILN 73

[Close]

BLAST of CmUC08G143480 vs. ExPASy TrEMBL
Match: A0A1S3CAZ4 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 6.1e-78
Identity = 174/290 (60.00%), Postives = 179/290 (61.72%), Query Frame = 0


Query: 1   MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSLSRFIIGLRLGGGGLRLDGGG 120
           IANYAVKLFSGLVNLH RTLKFA                                     
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFA------------------------------------- 120

Query: 121 GGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQ 180
                                                                   VSGQ
Sbjct: 121 --------------------------------------------------------VSGQ 180

Query: 181 DKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPG 240
           DKPS VS AITSS      SRSQIV G SNEISQYSNRFS+SC+F TY ENHLEALL PG
Sbjct: 181 DKPSPVSNAITSS------SRSQIVSGYSNEISQYSNRFSSSCRFPTYPENHLEALLNPG 191

Query: 241 LVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPY 291
           LVNQ+NGYGSHLDNYNKEYSQRYSGT L S +QPKSRRHD+SFPVDYPPY
Sbjct: 241 LVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY 191

[Close]

BLAST of CmUC08G143480 vs. ExPASy TrEMBL
Match: A0A6J1I8J0 (RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471946 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 8.3e-75
Identity = 164/294 (55.78%), Postives = 180/294 (61.22%), Query Frame = 0


Query: 1   MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSLSRFIIGLRLGGGGLRLDGGG 120
           I NYAVKLFSGLV LHNRTLKFA                                     
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFA------------------------------------- 120

Query: 121 GGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQ 180
                                                                   VSGQ
Sbjct: 121 --------------------------------------------------------VSGQ 180

Query: 181 DKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPG 240
           DKPS  S AITSSSNIS+KSRSQIVPG SNEIS YSNR S SC+F+ Y ENHLEA  YPG
Sbjct: 181 DKPSPSSSAITSSSNISHKSRSQIVPGYSNEISSYSNRLSNSCRFSAYPENHLEAPPYPG 201

Query: 241 LVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN 295
           LVNQ NGYGS+ D++N +YSQRYSGT L S + PKSRRHDTS+PV YPPY+LLN
Sbjct: 241 LVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYPVYYPPYELLN 201

[Close]

BLAST of CmUC08G143480 vs. ExPASy TrEMBL
Match: A0A6J1EX61 (RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.8e-74
Identity = 163/294 (55.44%), Postives = 180/294 (61.22%), Query Frame = 0


Query: 1   MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSLSRFIIGLRLGGGGLRLDGGG 120
           I NYAVKLFSGLV LHNRTLKFA                                     
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFA------------------------------------- 120

Query: 121 GGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQ 180
                                                                   VSGQ
Sbjct: 121 --------------------------------------------------------VSGQ 180

Query: 181 DKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPG 240
           DKPS  S AITSSSNIS+KSRSQIVPG SNEIS YSNR S SC+F+ Y ENH+EA  YPG
Sbjct: 181 DKPSPSSSAITSSSNISHKSRSQIVPGYSNEISSYSNRLSNSCRFSAYPENHVEAPPYPG 201

Query: 241 LVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN 295
           LVNQ NGYGS+ D++N +YSQRYSGT L S + PKSRRHDTS+PV YPPY+LLN
Sbjct: 241 LVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYPVYYPPYELLN 201

[Close]

BLAST of CmUC08G143480 vs. ExPASy TrEMBL
Match: A0A6J1CKW6 (RNA-binding protein 7 OS=Momordica charantia OX=3673 GN=LOC111012090 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.3e-71
Identity = 160/294 (54.42%), Postives = 175/294 (59.52%), Query Frame = 0


Query: 1   MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS+ CT+YVGNLD+RVSDRVLYDILIQAGR+VDLHIPRDKESGKPKG+AFAEYESEE
Sbjct: 1   MSGRSNCCTVYVGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSLSRFIIGLRLGGGGLRLDGGG 120
           IANYAVKLFSGLV LHNR LKFA                                     
Sbjct: 61  IANYAVKLFSGLVILHNRILKFA------------------------------------- 120

Query: 121 GGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQ 180
                                                                   VSGQ
Sbjct: 121 --------------------------------------------------------VSGQ 180

Query: 181 DKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPG 240
           DKPS  S AI SSSNIS+K RSQ VPG S+EISQYSNR STSC+F+ Y ENHLEA LYPG
Sbjct: 181 DKPSPSSIAINSSSNISHKLRSQFVPGYSSEISQYSNRLSTSCRFSAYPENHLEAPLYPG 201

Query: 241 LVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN 295
           LVNQ NGYGSH+ NYN EYSQRY GTTL S +  + RR++TS PV YPPY+ LN
Sbjct: 241 LVNQSNGYGSHMGNYNNEYSQRYCGTTLDSFNHSRPRRYETSNPVYYPPYEFLN 201

[Close]

BLAST of CmUC08G143480 vs. ExPASy TrEMBL
Match: A0A5A7T7S6 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G00940 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 9.5e-71
Identity = 162/278 (58.27%), Postives = 168/278 (60.43%), Query Frame = 0


Query: 13  GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 72
           GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL
Sbjct: 103 GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 162

Query: 73  VNLHNRTLKFAVCLLVVVSGLLLPLKSLSRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKK 132
           VNLH RTLKFA                                                 
Sbjct: 163 VNLHKRTLKFA------------------------------------------------- 222

Query: 133 KRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITS 192
                                                       VSGQDKPS VS AITS
Sbjct: 223 --------------------------------------------VSGQDKPSPVSNAITS 281

Query: 193 SSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHL 252
           S      SRSQIV G SNEISQY+NRFS+SC+F TY ENHLEALL PGLVNQ+NGYGSHL
Sbjct: 283 S------SRSQIVSGYSNEISQYTNRFSSSCRFPTYPENHLEALLNPGLVNQFNGYGSHL 281

Query: 253 DNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPY 291
           DNYNKEYSQRYSGT L S +QPKSRRHD+SFPVDYPPY
Sbjct: 343 DNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY 281

[Close]

BLAST of CmUC08G143480 vs. TAIR 10
Match: AT4G10110.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 145.6 bits (366), Expect = 6.3e-35
Identity = 69/84 (82.14%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          MSG S+ CT+Y+GN+DERVSDRVLYDI+IQAGRV+DLHIPRDKE+ KPKGFAFAEYE+EE
Sbjct: 1  MSGTSN-CTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEE 60

Query: 61 IANYAVKLFSGLVNLHNRTLKFAV 85
          IA+YAVKLFSGLV+L+NRTLKFA+
Sbjct: 61 IADYAVKLFSGLVSLYNRTLKFAI 83

[Close]

BLAST of CmUC08G143480 vs. TAIR 10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-12
Identity = 28/78 (35.90%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 4  RSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R+   T+YVG LD ++S+ +L+++ +QAG VV++++P+D+ +   + + F EY SEE A+
Sbjct: 21 RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80

Query: 64 YAVKLFSGLVNLHNRTLK 82
          YA+K+ + ++ LH + ++
Sbjct: 81 YAIKVLN-MIKLHGKPIR 97

[Close]

BLAST of CmUC08G143480 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 56.6 bits (135), Expect = 3.9e-08
Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 2   SGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEI 61
           SG   G  +YVGNL   V D  L  +  + G+VV+  +  D++SG+ KGF F  Y+S + 
Sbjct: 198 SGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257

Query: 62  ANYAVKLFSG 72
              A+K   G
Sbjct: 258 VQNAIKSLDG 267

[Close]

BLAST of CmUC08G143480 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 52.8 bits (125), Expect = 5.6e-07
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 5  SDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANY 64
          SD  ++ V N+  R +   LY +  + G+VVD+ IPRD+ +G  +GFAF  Y+ ++ A+ 
Sbjct: 13 SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72

Query: 65 AVKLFSG-LVNLHNRTLKFA 84
          AV+   G +V+    T++FA
Sbjct: 73 AVERLDGRVVDGREITVQFA 92

[Close]

BLAST of CmUC08G143480 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 52.8 bits (125), Expect = 5.6e-07
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 5  SDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANY 64
          SD  ++ V N+  R +   LY +  + G+VVD+ IPRD+ +G  +GFAF  Y+ ++ A+ 
Sbjct: 13 SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72

Query: 65 AVKLFSG-LVNLHNRTLKFA 84
          AV+   G +V+    T++FA
Sbjct: 73 AVERLDGRVVDGREITVQFA 92

The following BLAST results are available for this feature:

BLAST of CmUC08G143480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890192.1	3.0e-79	62.24	RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890193.1 RNA-bi...	[more]
XP_008459559.1	1.3e-77	60.00	PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo] >XP_008459560.1 ...	[more]
XP_023523852.1	1.0e-74	55.78	RNA-binding protein 7-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022973396.1	1.7e-74	55.78	RNA-binding protein 7-like isoform X1 [Cucurbita maxima]	[more]
XP_022932504.1	3.8e-74	55.44	RNA-binding protein 7 isoform X1 [Cucurbita moschata]	[more]

BLAST of CmUC08G143480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15427	3.9e-13	39.51	Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1	[more]
Q8QZY9	3.9e-13	39.51	Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1	[more]
Q6AYL5	3.9e-13	39.51	Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1	[more]
Q09442	1.9e-12	39.74	Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV...	[more]
O14102	4.8e-11	43.28	Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of CmUC08G143480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CAZ4	6.1e-78	60.00	RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE...	[more]
A0A6J1I8J0	8.3e-75	55.78	RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11147194...	[more]
A0A6J1EX61	1.8e-74	55.44	RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 P...	[more]
A0A6J1CKW6	4.3e-71	54.42	RNA-binding protein 7 OS=Momordica charantia OX=3673 GN=LOC111012090 PE=4 SV=1	[more]
A0A5A7T7S6	9.5e-71	58.27	RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of CmUC08G143480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10110.1	6.3e-35	82.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G18510.1	2.0e-12	35.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37220.1	3.9e-08	37.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G64200.1	5.6e-07	36.25	ortholog of human splicing factor SC35	[more]
AT5G64200.2	5.6e-07	36.25	ortholog of human splicing factor SC35	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..83 e-value: 1.3E-17 score: 74.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..80 e-value: 5.0E-14 score: 51.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..82 score: 14.47054
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..182 e-value: 2.8E-19 score: 71.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 266..285
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..184
None	No IPR available	PANTHER	PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	coord: 1..290
None	No IPR available	PANTHER	PTHR13798:SF11	OS01G0876500 PROTEIN	coord: 1..290
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC08G143480.1	CmUC08G143480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding