CmUC07G142530 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC07G142530
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Pectin lyase-like superfamily protein
Location	CmU531Chr07: 31695026 .. 31695646 (+)
RNA-Seq Expression	CmUC07G142530
Synteny	CmUC07G142530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCATAGGTAAGCAACTGCCTCTTACAAGGCATTCAAAATGGAATTAGAATTAAGACTAGATAGGTGATAATGCTTTTTTAATTTATTTATATATCAATGTCTAATCTCCATTATATAAAAATATTACATTCGAGAAAATAATACTCAAGAATGTAATTTTAGAGTTGATCAATTTTATTCATCTTATGCTTATTCAAGAAAAGTTAAGACATTTTTTTTTTGAAAGCAATCATAAAACAACTATAAAGTCATTGAAGCCACATCTACCTCAACTAGAAGATAAAGTCAAGTAGGGAAATTATCCCACCAACGTGGAGATAATGAAAATTTTTCTTTGTTCTTATTACAGTTTGTTCGTTTATGTTTATTATATTGATTTTCTTTCTTTAGAGAGAATGAACATAAAAGTGAGTGATATGACATTTTGTGAAGTTAATGGAACTTCAGCAAATGAAGATGCAATTACTTTGAATTGCTCCCGAGCTTGTTGTACAGATATTATATTAGACAATGAAGCAATTACTCCAAAAAAAAGAAGCCAAAGCTTTTTGCCAAATGTCGATGAAAAATCTATATCTGTTATTCCCGTTTTGCCTTGCTTATCAAAATCGAATTAA

mRNA sequence

ATGTTCATAGAGAGAATGAACATAAAAGTGAGTGATATGACATTTTGTGAAGTTAATGGAACTTCAGCAAATGAAGATGCAATTACTTTGAATTGCTCCCGAGCTTGTTGTACAGATATTATATTAGACAATGAAGCAATTACTCCAAAAAAAAGAAGCCAAAGCTTTTTGCCAAATGTCGATGAAAAATCTATATCTGTTATTCCCGTTTTGCCTTGCTTATCAAAATCGAATTAA

Coding sequence (CDS)

ATGTTCATAGAGAGAATGAACATAAAAGTGAGTGATATGACATTTTGTGAAGTTAATGGAACTTCAGCAAATGAAGATGCAATTACTTTGAATTGCTCCCGAGCTTGTTGTACAGATATTATATTAGACAATGAAGCAATTACTCCAAAAAAAAGAAGCCAAAGCTTTTTGCCAAATGTCGATGAAAAATCTATATCTGTTATTCCCGTTTTGCCTTGCTTATCAAAATCGAATTAA

Protein sequence

MFIERMNIKVSDMTFCEVNGTSANEDAITLNCSRACCTDIILDNEAITPKKRSQSFLPNVDEKSISVIPVLPCLSKSN

Homology

[Close]

BLAST of CmUC07G142530 vs. NCBI nr
Match: XP_038888676.1 (probable polygalacturonase At3g15720 [Benincasa hispida])

HSP 1 Score: 91.3 bits (225), Expect = 4.0e-15
Identity = 48/79 (60.76%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 3   IERMNIKVSDMTFCEVNGTSANEDAITLNCSRACCTDIILDN---EAITPKKRSQSFLPN 62
           I+ M+IKVSD+T+ EVNGTSANEDAITLNCSRA CT+IILDN   + IT  K +++   N
Sbjct: 319 IKGMDIKVSDVTYREVNGTSANEDAITLNCSRARCTNIILDNVNIKMITLGKEAKAICQN 378

Query: 63  VDEKSISVIPVLPCLSKSN 79
           VD K +S +P++ CLSKS+
Sbjct: 379 VDGKFLSTVPIVSCLSKSH 397

[Close]

BLAST of CmUC07G142530 vs. NCBI nr
Match: KAG7014865.1 (putative polygalacturonase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.6 bits (205), Expect = 8.4e-13
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 8   IKVSDMTFCEVNGTSANEDAITLNCSRACCTDIILDNEAI---TPKKRSQSFLPNVDEKS 67
           IKVSD+T+ EV+GTSANE+AI LNCSRA CT+II++N  I   TP   ++S   N D K+
Sbjct: 293 IKVSDVTYREVHGTSANENAIILNCSRARCTNIIINNVNIRTSTPVTEAKSICQNADGKA 352

Query: 68  ISVIPVLPCLSKSN 79
           ISVIP +PCLSKS+
Sbjct: 353 ISVIPPVPCLSKSH 366

[Close]

BLAST of CmUC07G142530 vs. NCBI nr
Match: XP_038888688.1 (probable polygalacturonase At3g15720 [Benincasa hispida])

HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 6   MNIKVSDMTFCEVNGTSANEDAITLNCSRACCTDIILDNEAI---TPKKRSQSFLPNVDE 65
           +NIKVSD+T+ EV+GTSANE+AITLNCSRA CT+I++DN  I   TP + +++F  NV+ 
Sbjct: 322 INIKVSDVTYREVHGTSANENAITLNCSRARCTNILMDNVNIRTSTPGEEAKAFCQNVEG 381

Query: 66  KSISVIPVLPCLSK 77
           K    +P +PCLSK
Sbjct: 382 KVDRAVPSVPCLSK 395

[Close]

BLAST of CmUC07G142530 vs. NCBI nr
Match: XP_008454473.1 (PREDICTED: probable polygalacturonase At3g15720 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12
Identity = 43/79 (54.43%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 3   IERMNIKVSDMTFCEVNGTSANEDAITLNCSRACCTDIILDNEAI---TPKKRSQSFLPN 62
           I+ M+IKVSD+T+ EVNGTSANE+AIT NCS+A C++IILDN  I    P + +++   N
Sbjct: 308 IKGMDIKVSDVTYREVNGTSANEEAITFNCSQARCSNIILDNVNIKMTNPGEEAKAVCQN 367

Query: 63  VDEKSISVIPVLPCLSKSN 79
           VD K +S +P + CLSKS+
Sbjct: 368 VDGKVLSAVPPVSCLSKSH 386

[Close]

BLAST of CmUC07G142530 vs. NCBI nr
Match: KAA0044700.1 (putative polygalacturonase [Cucumis melo var. makuwa] >TYK16887.1 putative polygalacturonase [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12
Identity = 43/79 (54.43%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 3   IERMNIKVSDMTFCEVNGTSANEDAITLNCSRACCTDIILDNEAI---TPKKRSQSFLPN 62
           I+ M+IKVSD+T+ EVNGTSANE+AIT NCS+A C++IILDN  I    P + +++   N
Sbjct: 319 IKGMDIKVSDVTYREVNGTSANEEAITFNCSQARCSNIILDNVNIKMTNPGEEAKAVCQN 378

Query: 63  VDEKSISVIPVLPCLSKSN 79
           VD K +S +P + CLSKS+
Sbjct: 379 VDGKVLSAVPPVSCLSKSH 397

[Close]

BLAST of CmUC07G142530 vs. ExPASy TrEMBL
Match: A0A5D3CYS8 (Putative polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00190 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12
Identity = 43/79 (54.43%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 3   IERMNIKVSDMTFCEVNGTSANEDAITLNCSRACCTDIILDNEAI---TPKKRSQSFLPN 62
           I+ M+IKVSD+T+ EVNGTSANE+AIT NCS+A C++IILDN  I    P + +++   N
Sbjct: 319 IKGMDIKVSDVTYREVNGTSANEEAITFNCSQARCSNIILDNVNIKMTNPGEEAKAVCQN 378

Query: 63  VDEKSISVIPVLPCLSKSN 79
           VD K +S +P + CLSKS+
Sbjct: 379 VDGKVLSAVPPVSCLSKSH 397

[Close]

BLAST of CmUC07G142530 vs. ExPASy TrEMBL
Match: A0A1S3BYT5 (probable polygalacturonase At3g15720 OS=Cucumis melo OX=3656 GN=LOC103494869 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12
Identity = 43/79 (54.43%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 3   IERMNIKVSDMTFCEVNGTSANEDAITLNCSRACCTDIILDNEAI---TPKKRSQSFLPN 62
           I+ M+IKVSD+T+ EVNGTSANE+AIT NCS+A C++IILDN  I    P + +++   N
Sbjct: 308 IKGMDIKVSDVTYREVNGTSANEEAITFNCSQARCSNIILDNVNIKMTNPGEEAKAVCQN 367

Query: 63  VDEKSISVIPVLPCLSKSN 79
           VD K +S +P + CLSKS+
Sbjct: 368 VDGKVLSAVPPVSCLSKSH 386

[Close]

BLAST of CmUC07G142530 vs. ExPASy TrEMBL
Match: A0A0A0KZ95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025750 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.6e-12
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 6   MNIKVSDMTFCEVNGTSANEDAITLNCSRACCTDIILDNEAI---TPKKRSQSFLPNVDE 65
           M+IKVSD+T+ EVNGTSANEDAIT NCS+A C++IILDN  I    P +++++   N D 
Sbjct: 318 MDIKVSDVTYREVNGTSANEDAITFNCSQARCSNIILDNVNIKMTNPGEKAKAVCQNADG 377

Query: 66  KSISVIPVLPCLSKSN 79
           K +S +P + CLSKS+
Sbjct: 378 KVLSAVPPVSCLSKSH 393

[Close]

BLAST of CmUC07G142530 vs. ExPASy TrEMBL
Match: A0A6J1CJJ6 (probable polygalacturonase At3g15720 OS=Momordica charantia OX=3673 GN=LOC111011582 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.7e-12
Identity = 41/74 (55.41%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 8   IKVSDMTFCEVNGTSANEDAITLNCSRACCTDIILDN---EAITPKKRSQSFLPNVDEKS 67
           IKVSD+T+ EV+GTSANE+AI LNCSR+ C++II++N   + I P K ++    NVD +S
Sbjct: 323 IKVSDVTYREVHGTSANENAIILNCSRSRCSNIIMENVSIKNIDPXKEAKXLCQNVDGRS 382

Query: 68  ISVIPVLPCLSKSN 79
            S IP +PCLSK N
Sbjct: 383 TSAIPSVPCLSKQN 396

[Close]

BLAST of CmUC07G142530 vs. ExPASy TrEMBL
Match: A0A6J1CIX8 (probable polygalacturonase At3g15720 OS=Momordica charantia OX=3673 GN=LOC111011581 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-11
Identity = 40/78 (51.28%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 1   MFIERMNIKVSDMTFCEVNGTSANEDAITLNCSRACCTDIILDN---EAITPKKRSQSFL 60
           +F +  +IKVS++T+ EVNGTSANE+AI LNCSR  C++IIL+N   + I PK  +++F 
Sbjct: 314 IFFQLFDIKVSNVTYREVNGTSANENAIILNCSRNRCSNIILENVSIKPIDPKMEAKAFC 373

Query: 61  PNVDEKSISVIPVLPCLS 76
            NVD +S   +P +PCLS
Sbjct: 374 QNVDGRSTYAVPTVPCLS 391

[Close]

BLAST of CmUC07G142530 vs. TAIR 10
Match: AT2G43860.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 9.0e-05
Identity = 22/75 (29.33%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 4   ERMNIKVSDMTFCEVNGTSANEDAITLNCSR-ACCTDIILDN-EAITPKKRSQSFLPNVD 63
           +   +KVS++ + +++GTS  E A+ L+CS+   CT I++D+   ++  + +Q+   N +
Sbjct: 326 QESGVKVSNVRYEDIHGTSNTEVAVLLDCSKEKPCTGIVMDDVNLVSVHRPAQASCDNAN 385

Query: 64  EKSISVIPVLPCLSK 77
             +  V+P  PCL +
Sbjct: 386 GSANDVVPFTPCLKR 400

[Close]

BLAST of CmUC07G142530 vs. TAIR 10
Match: AT1G05660.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 4   ERMNIKVSDMTFCEVNGTSANEDAITLNCSRAC-CTDIILDNEAITPKK--RSQSFLPNV 63
           E   +K+S +T+  + GTSA ++A+ L CS++  CT I L +  +T  K   + SF  N 
Sbjct: 319 EYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNA 378

Query: 64  DEKSISVIPVLPCLSK 77
             KS+ VI    CL++
Sbjct: 379 VGKSLGVIQPTSCLNR 394

The following BLAST results are available for this feature:

BLAST of CmUC07G142530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888676.1	4.0e-15	60.76	probable polygalacturonase At3g15720 [Benincasa hispida]	[more]
KAG7014865.1	8.4e-13	60.81	putative polygalacturonase, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038888688.1	3.2e-12	56.76	probable polygalacturonase At3g15720 [Benincasa hispida]	[more]
XP_008454473.1	3.2e-12	54.43	PREDICTED: probable polygalacturonase At3g15720 [Cucumis melo]	[more]
KAA0044700.1	3.2e-12	54.43	putative polygalacturonase [Cucumis melo var. makuwa] >TYK16887.1 putative polyg...	[more]

BLAST of CmUC07G142530 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC07G142530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CYS8	1.5e-12	54.43	Putative polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3BYT5	1.5e-12	54.43	probable polygalacturonase At3g15720 OS=Cucumis melo OX=3656 GN=LOC103494869 PE=...	[more]
A0A0A0KZ95	2.6e-12	55.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025750 PE=3 SV=1	[more]
A0A6J1CJJ6	7.7e-12	55.41	probable polygalacturonase At3g15720 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1CIX8	1.0e-11	51.28	probable polygalacturonase At3g15720 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

BLAST of CmUC07G142530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43860.1	9.0e-05	29.33	Pectin lyase-like superfamily protein	[more]
AT1G05660.1	1.2e-04	35.53	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 4..64 e-value: 5.8E-6 score: 27.4
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 7..60 e-value: 3.4E-7 score: 29.7
None	No IPR available	PANTHER	PTHR31375:SF232	SUBFAMILY NOT NAMED	coord: 5..74
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 5..74
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 8..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC07G142530.1	CmUC07G142530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity