CmUC07G135280 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC07G135280
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	High mobility group nucleosome-binding domain-containing protein 5-like
Location	CmU531Chr07: 23883653 .. 23884120 (+)
RNA-Seq Expression	CmUC07G135280
Synteny	CmUC07G135280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGATAAGGAGATAGCTCTGATTAAAGGTTGGAGGGAGTTTATGTTTGAAAGGAGAATAGAAGACGATGAAAATCTGGAGAAGAAAAAGAGGCGTGGAAACGAGGAGAAGGAAGGCAATAGGAGCATAAAGGTGTGGAGTATTGTTCTTGGCAGAGGCATTGATGAGAAAAAGGAGAGTAATCAGAAAACATGGCTGGAAAAGTCCGAGGGAGAGAAGAGCGTGGAGTTGACAGAGAGTACATTGGTGGAAAGAAGAGAGGGAAGGGAGGAAAGGGTAAAGATAACGGCGGCGGAAGAAGGAGAGACGGAGGAGCTCATTGAGAGCCCAGAAGGAAATGAAGGAAACGAGGAAGAAACGGACGGTCCAGAGAGAATTGAAGCGTTGGAGATGGTGGGAGGTGCGAGACTTGAGACGGAGGTGGAAGATGAAGGAGATGGAGAGAAGAGAAAGGAAAAGGATTAA

mRNA sequence

ATGTTTGATAAGGAGATAGCTCTGATTAAAGGTTGGAGGGAGTTTATGTTTGAAAGGAGAATAGAAGACGATGAAAATCTGGAGAAGAAAAAGAGGCGTGGAAACGAGGAGAAGGAAGGCAATAGGAGCATAAAGGTGTGGAGTATTGTTCTTGGCAGAGGCATTGATGAGAAAAAGGAGAGTAATCAGAAAACATGGCTGGAAAAGTCCGAGGGAGAGAAGAGCGTGGAGTTGACAGAGAGTACATTGGTGGAAAGAAGAGAGGGAAGGGAGGAAAGGGTAAAGATAACGGCGGCGGAAGAAGGAGAGACGGAGGAGCTCATTGAGAGCCCAGAAGGAAATGAAGGAAACGAGGAAGAAACGGACGGTCCAGAGAGAATTGAAGCGTTGGAGATGGTGGGAGGTGCGAGACTTGAGACGGAGGTGGAAGATGAAGGAGATGGAGAGAAGAGAAAGGAAAAGGATTAA

Coding sequence (CDS)

ATGTTTGATAAGGAGATAGCTCTGATTAAAGGTTGGAGGGAGTTTATGTTTGAAAGGAGAATAGAAGACGATGAAAATCTGGAGAAGAAAAAGAGGCGTGGAAACGAGGAGAAGGAAGGCAATAGGAGCATAAAGGTGTGGAGTATTGTTCTTGGCAGAGGCATTGATGAGAAAAAGGAGAGTAATCAGAAAACATGGCTGGAAAAGTCCGAGGGAGAGAAGAGCGTGGAGTTGACAGAGAGTACATTGGTGGAAAGAAGAGAGGGAAGGGAGGAAAGGGTAAAGATAACGGCGGCGGAAGAAGGAGAGACGGAGGAGCTCATTGAGAGCCCAGAAGGAAATGAAGGAAACGAGGAAGAAACGGACGGTCCAGAGAGAATTGAAGCGTTGGAGATGGTGGGAGGTGCGAGACTTGAGACGGAGGTGGAAGATGAAGGAGATGGAGAGAAGAGAAAGGAAAAGGATTAA

Protein sequence

MFDKEIALIKGWREFMFERRIEDDENLEKKKRRGNEEKEGNRSIKVWSIVLGRGIDEKKESNQKTWLEKSEGEKSVELTESTLVERREGREERVKITAAEEGETEELIESPEGNEGNEEETDGPERIEALEMVGGARLETEVEDEGDGEKRKEKD

Homology

[Close]

BLAST of CmUC07G135280 vs. NCBI nr
Match: KAG6576629.1 (hypothetical protein SDJN03_24203, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.8 bits (242), Expect = 8.6e-17
Identity = 59/107 (55.14%), Postives = 77/107 (71.96%), Query Frame = 0


Query: 5   EIALIKGWREFMFERRIEDDENLEKKKRRGNEEKEGNRSIKVWSIVLGRGIDEKKESNQK 64
           EIALI+G  +F+ E  ++DDE +E++   G+EEKEGN SI V   VLG  IDE ++ N+K
Sbjct: 159 EIALIEGGGQFVLEGGVKDDEKVEEENGHGDEEKEGNSSIVVRGPVLGGRIDEVEKGNEK 218

Query: 65  TWLEKSEGEKSVELTESTLVERREGREERVKITAAEEGETEELIESP 112
           T LEK+EGE+ +EL E  LVE  +G EE V+I AAEEGE EEL+E P
Sbjct: 219 TGLEKAEGEEGMELAEGGLVEGGQGGEEGVEIAAAEEGEAEELVEGP 265

[Close]

BLAST of CmUC07G135280 vs. NCBI nr
Match: CAB4271654.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-16
Identity = 60/134 (44.78%), Postives = 89/134 (66.42%), Query Frame = 0


Query: 22  EDDENLEKKKRRGNEEKEGNRSIKVWSIVLGRGIDEKKESNQKTWLEKSEGEKSVELTES 81
           E ++NL++       E EG+    +  + L   +DE++E +Q+  LEK +GE  ++  E 
Sbjct: 179 EQEDNLDQSHGETGGEDEGDGPEGIGGLFLDGDVDEEEEGDQEGGLEKPQGESHMDFAEV 238

Query: 82  TLVERREGREERVKITAAEEGETEELIESPEGNEGNEEETDGPERIEALEMVGGARLETE 141
            L+E  EG EERV++ AAE G+TEEL+E PE +E +EEE+DGPE +E LEM GGA LE E
Sbjct: 239 GLLEGGEGGEERVEVGAAEGGDTEELVEGPEDDEEDEEESDGPEGVEVLEMEGGAGLEAE 298

Query: 142 VEDEGDGEKRKEKD 156
           VEDE +GE+ ++ +
Sbjct: 299 VEDEAEGEEGEDDE 312

[Close]

BLAST of CmUC07G135280 vs. NCBI nr
Match: PQP95170.1 (high mobility group nucleosome-binding domain-containing protein 5-like [Prunus yedoensis var. nudiflora])

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-16
Identity = 60/134 (44.78%), Postives = 89/134 (66.42%), Query Frame = 0


Query: 22  EDDENLEKKKRRGNEEKEGNRSIKVWSIVLGRGIDEKKESNQKTWLEKSEGEKSVELTES 81
           E ++NL++       E EG+    +  + L  G+DE++E +Q+  LEKS+GE  ++  E 
Sbjct: 180 EQEDNLDQSHGETGGEDEGDGPGGIGGLFLDGGVDEEEEGDQEGGLEKSQGESHMDFAEV 239

Query: 82  TLVERREGREERVKITAAEEGETEELIESPEGNEGNEEETDGPERIEALEMVGGARLETE 141
            L+E  EG EERV++ AAE G+ EEL+E PE +E +EEE+DGPE +E LEM GGA LE E
Sbjct: 240 GLLEGGEGGEERVEVGAAEGGDAEELVEGPEDDEEDEEESDGPEGVEVLEMEGGAGLEAE 299

Query: 142 VEDEGDGEKRKEKD 156
           VEDE  G++ ++ +
Sbjct: 300 VEDEAKGQEGEDDE 313

[Close]

BLAST of CmUC07G135280 vs. NCBI nr
Match: CAB4302092.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-16
Identity = 60/134 (44.78%), Postives = 89/134 (66.42%), Query Frame = 0


Query: 22  EDDENLEKKKRRGNEEKEGNRSIKVWSIVLGRGIDEKKESNQKTWLEKSEGEKSVELTES 81
           E ++NL++       E EG+    +  + L   +DE++E +Q+  LEK +GE  ++  E 
Sbjct: 151 EQEDNLDQSHGETGGEDEGDGPEGIGGLFLDGDVDEEEEGDQEGGLEKPQGESHMDFAEV 210

Query: 82  TLVERREGREERVKITAAEEGETEELIESPEGNEGNEEETDGPERIEALEMVGGARLETE 141
            L+E  EG EERV++ AAE G+TEEL+E PE +E +EEE+DGPE +E LEM GGA LE E
Sbjct: 211 GLLEGGEGGEERVEVGAAEGGDTEELVEGPEDDEEDEEESDGPEGVEVLEMEGGAGLEAE 270

Query: 142 VEDEGDGEKRKEKD 156
           VEDE +GE+ ++ +
Sbjct: 271 VEDEAEGEEGEDDE 284

[Close]

BLAST of CmUC07G135280 vs. NCBI nr
Match: XP_020413053.1 (high mobility group nucleosome-binding domain-containing protein 5-like [Prunus persica])

HSP 1 Score: 95.9 bits (237), Expect = 3.3e-16
Identity = 60/134 (44.78%), Postives = 88/134 (65.67%), Query Frame = 0


Query: 22  EDDENLEKKKRRGNEEKEGNRSIKVWSIVLGRGIDEKKESNQKTWLEKSEGEKSVELTES 81
           E ++NL++       E EGN    +  + L   +DE++E +Q+  LEK +GE  ++  E 
Sbjct: 189 EQEDNLDQSHGETGGEDEGNGPEGIGGLFLDGDVDEEEEGDQEGGLEKPQGESHMDFAEV 248

Query: 82  TLVERREGREERVKITAAEEGETEELIESPEGNEGNEEETDGPERIEALEMVGGARLETE 141
            L+E  EG EERV++ AAE G+TEEL+E PE +E +EEE+DGPE +E LEM  GA LE E
Sbjct: 249 GLLEGGEGGEERVEVGAAEGGDTEELVEGPEDDEEDEEESDGPEGVEVLEMESGAGLEAE 308

Query: 142 VEDEGDGEKRKEKD 156
           VEDE +GE+ ++ +
Sbjct: 309 VEDEAEGEEGEDDE 322

[Close]

BLAST of CmUC07G135280 vs. ExPASy TrEMBL
Match: A0A314XUC1 (High mobility group nucleosome-binding domain-containing protein 5-like OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_23214 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-16
Identity = 60/134 (44.78%), Postives = 89/134 (66.42%), Query Frame = 0


Query: 22  EDDENLEKKKRRGNEEKEGNRSIKVWSIVLGRGIDEKKESNQKTWLEKSEGEKSVELTES 81
           E ++NL++       E EG+    +  + L  G+DE++E +Q+  LEKS+GE  ++  E 
Sbjct: 180 EQEDNLDQSHGETGGEDEGDGPGGIGGLFLDGGVDEEEEGDQEGGLEKSQGESHMDFAEV 239

Query: 82  TLVERREGREERVKITAAEEGETEELIESPEGNEGNEEETDGPERIEALEMVGGARLETE 141
            L+E  EG EERV++ AAE G+ EEL+E PE +E +EEE+DGPE +E LEM GGA LE E
Sbjct: 240 GLLEGGEGGEERVEVGAAEGGDAEELVEGPEDDEEDEEESDGPEGVEVLEMEGGAGLEAE 299

Query: 142 VEDEGDGEKRKEKD 156
           VEDE  G++ ++ +
Sbjct: 300 VEDEAKGQEGEDDE 313

[Close]

BLAST of CmUC07G135280 vs. ExPASy TrEMBL
Match: A0A6J5WQW0 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS17674 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-16
Identity = 60/134 (44.78%), Postives = 89/134 (66.42%), Query Frame = 0


Query: 22  EDDENLEKKKRRGNEEKEGNRSIKVWSIVLGRGIDEKKESNQKTWLEKSEGEKSVELTES 81
           E ++NL++       E EG+    +  + L   +DE++E +Q+  LEK +GE  ++  E 
Sbjct: 151 EQEDNLDQSHGETGGEDEGDGPEGIGGLFLDGDVDEEEEGDQEGGLEKPQGESHMDFAEV 210

Query: 82  TLVERREGREERVKITAAEEGETEELIESPEGNEGNEEETDGPERIEALEMVGGARLETE 141
            L+E  EG EERV++ AAE G+TEEL+E PE +E +EEE+DGPE +E LEM GGA LE E
Sbjct: 211 GLLEGGEGGEERVEVGAAEGGDTEELVEGPEDDEEDEEESDGPEGVEVLEMEGGAGLEAE 270

Query: 142 VEDEGDGEKRKEKD 156
           VEDE +GE+ ++ +
Sbjct: 271 VEDEAEGEEGEDDE 284

[Close]

BLAST of CmUC07G135280 vs. ExPASy TrEMBL
Match: A0A6J5U8G2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS18054 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-16
Identity = 60/134 (44.78%), Postives = 89/134 (66.42%), Query Frame = 0


Query: 22  EDDENLEKKKRRGNEEKEGNRSIKVWSIVLGRGIDEKKESNQKTWLEKSEGEKSVELTES 81
           E ++NL++       E EG+    +  + L   +DE++E +Q+  LEK +GE  ++  E 
Sbjct: 179 EQEDNLDQSHGETGGEDEGDGPEGIGGLFLDGDVDEEEEGDQEGGLEKPQGESHMDFAEV 238

Query: 82  TLVERREGREERVKITAAEEGETEELIESPEGNEGNEEETDGPERIEALEMVGGARLETE 141
            L+E  EG EERV++ AAE G+TEEL+E PE +E +EEE+DGPE +E LEM GGA LE E
Sbjct: 239 GLLEGGEGGEERVEVGAAEGGDTEELVEGPEDDEEDEEESDGPEGVEVLEMEGGAGLEAE 298

Query: 142 VEDEGDGEKRKEKD 156
           VEDE +GE+ ++ +
Sbjct: 299 VEDEAEGEEGEDDE 312

The following BLAST results are available for this feature:

BLAST of CmUC07G135280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576629.1	8.6e-17	55.14	hypothetical protein SDJN03_24203, partial [Cucurbita argyrosperma subsp. sorori...	[more]
CAB4271654.1	2.5e-16	44.78	unnamed protein product [Prunus armeniaca]	[more]
PQP95170.1	2.5e-16	44.78	high mobility group nucleosome-binding domain-containing protein 5-like [Prunus ...	[more]
CAB4302092.1	2.5e-16	44.78	unnamed protein product [Prunus armeniaca]	[more]
XP_020413053.1	3.3e-16	44.78	high mobility group nucleosome-binding domain-containing protein 5-like [Prunus ...	[more]

BLAST of CmUC07G135280 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC07G135280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A314XUC1	1.2e-16	44.78	High mobility group nucleosome-binding domain-containing protein 5-like OS=Prunu...	[more]
A0A6J5WQW0	1.2e-16	44.78	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS17674 PE=...	[more]
A0A6J5U8G2	1.2e-16	44.78	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS18054 PE=4 S...	[more]

BLAST of CmUC07G135280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC07G135280.1	CmUC07G135280.1	mRNA