CmUC07G130340 (gene) Watermelon (USVL531) v1

Overview
NameCmUC07G130340
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionReverse transcriptase domain-containing protein
LocationCmU531Chr07: 3994785 .. 3995072 (-)
RNA-Seq ExpressionCmUC07G130340
SyntenyCmUC07G130340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATCCTCAGTTGGAATGCCGGGGGTATTGGTAACCCTAAGGCATTCCGGGCATTGTCTGACCTTCTAAGGATCAGGCATCCTGTGATTGTGTTTCTATCTGAGACAAAGTGTGGTGAAGAGACTACGGATAGAATCAAGAGAAGTGGGAATTTCCTTGGATGCTTTGCGGTTAAAAGCATTGGTTCAAAAGGTGGCCTGTGTCTACTTTGGAAAGCTAAGGTCGATTTGAGAGTAATCAAATCAATGGAGATTTTCTGGCATATATGGTTTCCCGCAAGGTGA

mRNA sequence

ATGAAAATCCTCAGTTGGAATGCCGGGGGTATTGGTAACCCTAAGGCATTCCGGGCATTGTCTGACCTTCTAAGGATCAGGCATCCTGTGATTGTGTTTCTATCTGAGACAAAGTGTGGTGAAGAGACTACGGATAGAATCAAGAGAAGTGGGAATTTCCTTGGATGCTTTGCGGTTAAAAGCATTGGTTCAAAAGGTGGCCTGTGTCTACTTTGGAAAGCTAAGGTCGATTTGAGAGTAATCAAATCAATGGAGATTTTCTGGCATATATGGTTTCCCGCAAGGTGA

Coding sequence (CDS)

ATGAAAATCCTCAGTTGGAATGCCGGGGGTATTGGTAACCCTAAGGCATTCCGGGCATTGTCTGACCTTCTAAGGATCAGGCATCCTGTGATTGTGTTTCTATCTGAGACAAAGTGTGGTGAAGAGACTACGGATAGAATCAAGAGAAGTGGGAATTTCCTTGGATGCTTTGCGGTTAAAAGCATTGGTTCAAAAGGTGGCCTGTGTCTACTTTGGAAAGCTAAGGTCGATTTGAGAGTAATCAAATCAATGGAGATTTTCTGGCATATATGGTTTCCCGCAAGGTGA

Protein sequence

MKILSWNAGGIGNPKAFRALSDLLRIRHPVIVFLSETKCGEETTDRIKRSGNFLGCFAVKSIGSKGGLCLLWKAKVDLRVIKSMEIFWHIWFPAR
Homology
BLAST of CmUC07G130340 vs. NCBI nr
Match: XP_042962545.1 (uncharacterized protein LOC122296814 [Carya illinoinensis])

HSP 1 Score: 89.0 bits (219), Expect = 2.4e-14
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 0

Query: 1  MKILSWNAGGIGNPKAFRALSDLLRIRHPVIVFLSETKCGEETTDRIKRSGNFLGCFAVK 60
          M +L WN  G+GNP++ R LS L++ + P++VFL ETKC ++  + I+R     GCF V+
Sbjct: 1  MSLLVWNCRGLGNPRSVRILSKLVKEKGPLLVFLLETKCSKQRMEVIRRILKMDGCFDVE 60

Query: 61 SIGSKGGLCLLWKAKVDLRVIKSMEIFWHI 91
          SIG  GG+ LLWK + D++V+      WH+
Sbjct: 61 SIGMSGGIALLWKEEWDVQVVSYTR--WHV 88

BLAST of CmUC07G130340 vs. NCBI nr
Match: XP_042958050.1 (uncharacterized protein LOC122293561 [Carya illinoinensis])

HSP 1 Score: 88.2 bits (217), Expect = 4.2e-14
Identity = 37/90 (41.11%), Postives = 60/90 (66.67%), Query Frame = 0

Query: 1   MKILSWNAGGIGNPKAFRALSDLLRIRHPVIVFLSETKCGEETTDRIKRSGNFLGCFAVK 60
           M +L WN  G+GNP++ R LS L++ + P++VFL ETKC ++  + ++RS    GCF V+
Sbjct: 27  MSLLVWNYRGLGNPRSVRILSKLVKEKGPLLVFLLETKCSKQRMEVVRRSLKMDGCFDVE 86

Query: 61  SIGSKGGLCLLWKAKVDLRVIKSMEIFWHI 91
           S+G  GG+ LLWK + +++V+      WH+
Sbjct: 87  SVGMSGGIALLWKEEWEVQVVSYTR--WHV 114

BLAST of CmUC07G130340 vs. NCBI nr
Match: XP_042964610.1 (uncharacterized protein LOC122298825 [Carya illinoinensis])

HSP 1 Score: 87.0 bits (214), Expect = 9.3e-14
Identity = 37/90 (41.11%), Postives = 57/90 (63.33%), Query Frame = 0

Query: 1  MKILSWNAGGIGNPKAFRALSDLLRIRHPVIVFLSETKCGEETTDRIKRSGNFLGCFAVK 60
          M +LSWN  G+GNP+A R L+ L++ + P +VFL ETKC +   + +K+   F  C  V 
Sbjct: 1  MNLLSWNCRGLGNPRAVRILNMLIKAKLPSLVFLLETKCSKSKVEAVKQLIKFDNCLVVD 60

Query: 61 SIGSKGGLCLLWKAKVDLRVIKSMEIFWHI 91
          S+GS GGL ++WK  +++++I      WHI
Sbjct: 61 SVGSSGGLAMMWKNSLEVQLINFTR--WHI 88

BLAST of CmUC07G130340 vs. NCBI nr
Match: XP_042950087.1 (uncharacterized protein LOC122282202 [Carya illinoinensis])

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 41/89 (46.07%), Postives = 51/89 (57.30%), Query Frame = 0

Query: 1  MKILSWNAGGIGNPKAFRALSDLLRIRHPVIVFLSETKCGEETTDRIKRSGNFLGCFAVK 60
          MKILSWN  G+GNP++ R+L DLL    P I+FL ETK      +  K    F  CF V 
Sbjct: 1  MKILSWNLRGLGNPRSIRSLHDLLTSEVPEILFLQETKLSSRRLEFCKLRLGFRCCFGVD 60

Query: 61 SIGSKGGLCLLWKAKVDLRVIKSMEIFWH 90
          S+G  GGL L WK  ++LR+I    I  H
Sbjct: 61 SVGRSGGLALFWKEDINLRIISYSRIHIH 89

BLAST of CmUC07G130340 vs. NCBI nr
Match: XP_042961719.1 (uncharacterized protein LOC122296220 [Carya illinoinensis])

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 36/90 (40.00%), Postives = 59/90 (65.56%), Query Frame = 0

Query: 1  MKILSWNAGGIGNPKAFRALSDLLRIRHPVIVFLSETKCGEETTDRIKRSGNFLGCFAVK 60
          M +L WN  G+GNP++ R LS L++ + P++VFL E KC ++  + ++RS    GCF V+
Sbjct: 1  MSLLVWNYRGLGNPRSVRILSKLVKEKGPLLVFLVENKCSKQRMEVVRRSLKMDGCFDVE 60

Query: 61 SIGSKGGLCLLWKAKVDLRVIKSMEIFWHI 91
          S+G  GG+ LLWK + +++V+      WH+
Sbjct: 61 SVGMSGGIALLWKEEWEVQVVSYTR--WHV 88

BLAST of CmUC07G130340 vs. ExPASy TrEMBL
Match: A0A2N9HPX7 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41606 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.5e-13
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 0

Query: 1  MKILSWNAGGIGNPKAFRALSDLLRIRHPVIVFLSETKCGEETTDRIKRSGNFLGCFAVK 60
          M+ L WN  GI N    RAL  L+++ HP I+FL ETK GE+  + +KR+  + G F V 
Sbjct: 1  MRTLGWNCRGICNASTVRALKALIKVYHPEIIFLCETKAGEDRMEEVKRAIGYSGKFTVS 60

Query: 61 SIGSKGGLCLLWKAKVDLRVIK 83
          + G  GG+C+LW   ++L++++
Sbjct: 61 ARGKSGGICMLWSNTIELKIME 82

BLAST of CmUC07G130340 vs. ExPASy TrEMBL
Match: A0A2N9EC78 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS153 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.5e-13
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 0

Query: 1   MKILSWNAGGIGNPKAFRALSDLLRIRHPVIVFLSETKCGEETTDRIKRSGNFLGCFAVK 60
           M+ L WN  GI N    RAL  L+++ HP I+FL ETK GE+  + +KR+  + G F V 
Sbjct: 880 MRTLGWNCRGICNASTVRALKALIKVYHPEIIFLCETKAGEDRMEEVKRAIGYSGKFTVS 939

Query: 61  SIGSKGGLCLLWKAKVDLRVIK 83
           + G  GG+C+LW   ++L++++
Sbjct: 940 ARGKSGGICMLWSNTIELKIME 961

BLAST of CmUC07G130340 vs. ExPASy TrEMBL
Match: A0A2N9I9J4 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48601 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.5e-13
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 0

Query: 1   MKILSWNAGGIGNPKAFRALSDLLRIRHPVIVFLSETKCGEETTDRIKRSGNFLGCFAVK 60
           M+ L WN  GI N    RAL  L+++ HP I+FL ETK GE+  + +KR+  + G F V 
Sbjct: 87  MRTLGWNCRGICNASTVRALKALIKVYHPEIIFLCETKAGEDRMEEVKRAIGYSGKFTVS 146

Query: 61  SIGSKGGLCLLWKAKVDLRVIK 83
           + G  GG+C+LW   ++L++++
Sbjct: 147 ARGKSGGICMLWSNTIELKIME 168

BLAST of CmUC07G130340 vs. ExPASy TrEMBL
Match: A0A5B6VDB0 (BEACH domain-containing lvsC OS=Gossypium australe OX=47621 GN=EPI10_002129 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 34/88 (38.64%), Postives = 59/88 (67.05%), Query Frame = 0

Query: 3   ILSWNAGGIGNPKAFRALSDLLRIRHPVIVFLSETKCGEETTDRIKRSGNFLGCFAVKSI 62
           ILSWN  G+G+P+A R L  L++ ++P +VFL ET+  ++  +++++S   L C  V++ 
Sbjct: 328 ILSWNVRGLGSPRAVRRLRHLIKEQNPRLVFLMETELDKKRMEKVRKSCGLLNCIEVEAE 387

Query: 63  GSKGGLCLLWKAKVDLRVIKSMEIFWHI 91
           G++GGLCL WK  +D+R+    +  WH+
Sbjct: 388 GTRGGLCLAWKDGIDVRLRSFSK--WHL 413

BLAST of CmUC07G130340 vs. ExPASy TrEMBL
Match: A0A5C7HLY4 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_015628 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 0

Query: 4   LSWNAGGIGNPKAFRALSDLLRIRHPVIVFLSETKCGEETTDRIKRSGNFLGCFAVKSIG 63
           LSWN  G+GNP+ F ALS LL+   P +VFLS+TK  +  TD+ +    + GCF V S G
Sbjct: 335 LSWNVRGLGNPRTFIALSRLLKTHSPELVFLSKTKLNDRKTDKFRNLLGYSGCFCVDSNG 394

Query: 64  SKGGLCLLWKAKVDLRVI 82
           + GGL LLWK  + + ++
Sbjct: 395 NSGGLMLLWKDSLMVTIL 412

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_042962545.12.4e-1443.33uncharacterized protein LOC122296814 [Carya illinoinensis][more]
XP_042958050.14.2e-1441.11uncharacterized protein LOC122293561 [Carya illinoinensis][more]
XP_042964610.19.3e-1441.11uncharacterized protein LOC122298825 [Carya illinoinensis][more]
XP_042950087.11.6e-1346.07uncharacterized protein LOC122282202 [Carya illinoinensis][more]
XP_042961719.11.6e-1340.00uncharacterized protein LOC122296220 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2N9HPX76.5e-1340.24Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41606 PE=4 SV=1[more]
A0A2N9EC786.5e-1340.24Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS153 PE=4 SV=1[more]
A0A2N9I9J46.5e-1340.24Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A5B6VDB01.4e-1238.64BEACH domain-containing lvsC OS=Gossypium australe OX=47621 GN=EPI10_002129 PE=4... [more]
A0A5C7HLY41.9e-1246.15CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01562... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 1..92
e-value: 1.6E-10
score: 43.1
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC07G130340.1CmUC07G130340.1mRNA