CmUC06G123350 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G123350
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr06: 26913229 .. 26913680 (-)
RNA-Seq Expression	CmUC06G123350
Synteny	CmUC06G123350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGGACCAGTTGGGACGAGGCGTTTTTCGACGCCATATCGAGGATCAATCTCCGTGGCGGCCACGGGAGAATCGTCGTGATCGTGGTGGTGGTGGTGACGGCGACGACGGTGGTGGTGATGATGATGATGATCAGCTCGGAGATGTTGGAGAAAGATAGTGAAATCAAATTTGGAAGACATAATGAGTTTTCTATTGGGAGAGAAAGAAGAGATTTTTGGAAGATTGGGATGATGATGAATAGAGAGTTGATGAAAGAGGATGATTGAGGAGGAAAGAAGGATGAGAAAAAAGGAAAAGAATTTGCAAAGGTGGTTTAAAGGCATTATTATTAAGAAGAAGAATATGAATGTTGAGATGAGGGAGAGGAAAATGAAGGGGAAAGGACTGCATGGGAGAGGGAAAAAGAAGAAGAAGAAGAAGGAATTAGAAGGAATAAGAAATTAA

mRNA sequence

ATGGATTTGGACCAGTTGGGACGAGGCGTTTTTCGACGCCATATCGAGGATCAATCTCCGTGGCGGCCACGGGAGAATCGTCGTGATCGTGGTGGTGGTGGTGACGGCGACGACGGTGGTGGTGATGATGATGATGATCAGCTCGGAGATAGGATGATTGAGGAGGAAAGAAGGATGAGAAAAAAGGAAAAGAATTTGCAAAGGTGGTTTAAAGGCATTATTATTAAGAAGAAGAATATGAATGTTGAGATGAGGGAGAGGAAAATGAAGGGGAAAGGACTGCATGGGAGAGGGAAAAAGAAGAAGAAGAAGAAGGAATTAGAAGGAATAAGAAATTAA

Coding sequence (CDS)

ATGGATTTGGACCAGTTGGGACGAGGCGTTTTTCGACGCCATATCGAGGATCAATCTCCGTGGCGGCCACGGGAGAATCGTCGTGATCGTGGTGGTGGTGGTGACGGCGACGACGGTGGTGGTGATGATGATGATGATCAGCTCGGAGATAGGATGATTGAGGAGGAAAGAAGGATGAGAAAAAAGGAAAAGAATTTGCAAAGGTGGTTTAAAGGCATTATTATTAAGAAGAAGAATATGAATGTTGAGATGAGGGAGAGGAAAATGAAGGGGAAAGGACTGCATGGGAGAGGGAAAAAGAAGAAGAAGAAGAAGGAATTAGAAGGAATAAGAAATTAA

Protein sequence

MDLDQLGRGVFRRHIEDQSPWRPRENRRDRGGGGDGDDGGGDDDDDQLGDRMIEEERRMRKKEKNLQRWFKGIIIKKKNMNVEMRERKMKGKGLHGRGKKKKKKKELEGIRN

Homology

[Close]

BLAST of CmUC06G123350 vs. NCBI nr
Match: KGN63796.1 (hypothetical protein Csa_013253 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-09
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1  MDLDQLGRGVFRRHIEDQSPWRPRENRRDRGGGGDGDDGGGDDDDDQLGDRMIEE 56
          MDLDQLGRGVFRRHIEDQS ++PREN+ D G GGDG DGGGD+DD Q GD++ E+
Sbjct: 1  MDLDQLGRGVFRRHIEDQSRFQPRENQCDGGDGGDG-DGGGDEDDYQHGDKVDEK 54

[Close]

BLAST of CmUC06G123350 vs. ExPASy TrEMBL
Match: A0A0A0LUT7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015880 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-09
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1  MDLDQLGRGVFRRHIEDQSPWRPRENRRDRGGGGDGDDGGGDDDDDQLGDRMIEE 56
          MDLDQLGRGVFRRHIEDQS ++PREN+ D G GGDG DGGGD+DD Q GD++ E+
Sbjct: 1  MDLDQLGRGVFRRHIEDQSRFQPRENQCDGGDGGDG-DGGGDEDDYQHGDKVDEK 54

The following BLAST results are available for this feature:

BLAST of CmUC06G123350 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63796.1	2.1e-09	72.73	hypothetical protein Csa_013253 [Cucumis sativus]	[more]

BLAST of CmUC06G123350 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC06G123350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUT7	1.0e-09	72.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015880 PE=4 SV=1	[more]

BLAST of CmUC06G123350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G123350.1	CmUC06G123350.1	mRNA