Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCATCAGGGCCTTTACCATTGCCGCTTTCCTACTTGGTGTGTCCGTCATTGTATCAGAAAGCCGTGTTGCCAGGATGGACTTGGGCCTCGACCTTGGAGGAGTGGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGCTCTGGCTCCGGCTCCGGCTCCGGTTCTGCTTCCTCATCACACTCCTCAAGCTCCAGCTCCAGCTCCAGCTCCGGCTCCGACGCTGGGTCGGAAGCCGGTTCGTACGCTGGGTCTTATGCCGGGTCTCGGGCTGGATCCGGTTCGGGTAGGAACAGAAACGGTGGTTCCGGTTCTGGTTCCGGTTCAGGTTATGGTGCGGGTTCTGGGAGGGGTGGCGGTGAAGGATATGGAGAAGGCCATGGATACGGCGAGGGGCATGGTTATGGCAATGGCGGCGAAAACTGA
mRNA sequence
ATGGCTTCCATCAGGGCCTTTACCATTGCCGCTTTCCTACTTGGTGTGTCCGTCATTGTATCAGAAAGCCGTGTTGCCAGGATGGACTTGGGCCTCGACCTTGGAGGAGTGGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGCTCTGGCTCCGGCTCCGGCTCCGGTTCTGCTTCCTCATCACACTCCTCAAGCTCCAGCTCCAGCTCCAGCTCCGGCTCCGACGCTGGGTCGGAAGCCGGTTCGTACGCTGGGTCTTATGCCGGGTCTCGGGCTGGATCCGGTTCGGGTAGGAACAGAAACGGTGGTTCCGGTTCTGGTTCCGGTTCAGGTTATGGTGCGGGTTCTGGGAGGGGTGGCGGTGAAGGATATGGAGAAGGCCATGGATACGGCGAGGGGCATGGTTATGGCAATGGCGGCGAAAACTGA
Coding sequence (CDS)
ATGGCTTCCATCAGGGCCTTTACCATTGCCGCTTTCCTACTTGGTGTGTCCGTCATTGTATCAGAAAGCCGTGTTGCCAGGATGGACTTGGGCCTCGACCTTGGAGGAGTGGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGCTCTGGCTCCGGCTCCGGCTCCGGTTCTGCTTCCTCATCACACTCCTCAAGCTCCAGCTCCAGCTCCAGCTCCGGCTCCGACGCTGGGTCGGAAGCCGGTTCGTACGCTGGGTCTTATGCCGGGTCTCGGGCTGGATCCGGTTCGGGTAGGAACAGAAACGGTGGTTCCGGTTCTGGTTCCGGTTCAGGTTATGGTGCGGGTTCTGGGAGGGGTGGCGGTGAAGGATATGGAGAAGGCCATGGATACGGCGAGGGGCATGGTTATGGCAATGGCGGCGAAAACTGA
Protein sequence
MASIRAFTIAAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGSGSASSSHSSSSSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSGYGAGSGRGGGEGYGEGHGYGEGHGYGNGGEN
Homology
BLAST of CmUC06G121090 vs. NCBI nr
Match:
XP_038879815.1 (putative per-hexamer repeat protein 5 [Benincasa hispida])
HSP 1 Score: 188.3 bits (477), Expect = 4.6e-44
Identity = 139/151 (92.05%), Postives = 140/151 (92.72%), Query Frame = 0
Query: 1 MASIRAFTIAAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLG----GSGSGS 60
MASIRA TI AFLLGVSVIVSE RVARM+LGLDLGGVGLGVGTGVGLGLG GSGSGS
Sbjct: 1 MASIRAVTILAFLLGVSVIVSEGRVARMNLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
Query: 61 GSGSGSASSSHSSSSSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSG 120
GSGSGS SSS SSS SSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSG
Sbjct: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSG 120
Query: 121 YGAGSGRGGGEGYGEGHGYGEGHGYGNGGEN 148
YGAGSGRG GEGYGEGHGYGEGHGYGNGGEN
Sbjct: 121 YGAGSGRGSGEGYGEGHGYGEGHGYGNGGEN 151
BLAST of CmUC06G121090 vs. NCBI nr
Match:
XP_008443812.1 (PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo])
HSP 1 Score: 158.7 bits (400), Expect = 3.9e-35
Identity = 123/147 (83.67%), Postives = 126/147 (85.71%), Query Frame = 0
Query: 1 MASIRAFTIAAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
MASIR + FLLGVSVIVSESRVAR DLGLDLGG+GLGVGTGVGLGL GSGSG GSG
Sbjct: 1 MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGLDGSGSGFGSGP 60
Query: 61 GSASSSHSSSSSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSGYGAG 120
G SSS SSS SSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSG+G
Sbjct: 61 G--SSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTG---- 120
Query: 121 SGRGGGEGYGEGHGYGEGHGYGNGGEN 148
GGEGYGEGHGYGEGHGYGNGGEN
Sbjct: 121 ---NGGEGYGEGHGYGEGHGYGNGGEN 138
BLAST of CmUC06G121090 vs. NCBI nr
Match:
XP_023515818.1 (putative glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 150.6 bits (379), Expect = 1.1e-32
Identity = 122/162 (75.31%), Postives = 129/162 (79.63%), Query Frame = 0
Query: 1 MASIRAFTIAAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
MASIRA +I A LL +SVIVSESR+ARMDLGLDLGGVG+G+GTGVGLGLGGSGSGSGSGS
Sbjct: 1 MASIRAVSILALLLALSVIVSESRIARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60
Query: 61 GSASSSHSSSSSSSSSSGSDAGSEAGSY----------------AGSYAGSRAGSGSGRN 120
SASSSHSSSSSS S +GS+AGS AGSY AGSYAGSRAGS SGRN
Sbjct: 61 SSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGSGAGSEAGSYAGSRAGSASGRN 120
Query: 121 RNGGSGSGS--GSGYGAGSGRGGGEGYGEGHGYGEGHGYGNG 145
RNGGSGSGS G G G GSG GGGEGYGEGHGYGEG GYG G
Sbjct: 121 RNGGSGSGSGYGGGSGRGSGNGGGEGYGEGHGYGEGRGYGGG 162
BLAST of CmUC06G121090 vs. NCBI nr
Match:
XP_022921884.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG6589744.1 hypothetical protein SDJN03_15167, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 149.1 bits (375), Expect = 3.1e-32
Identity = 118/147 (80.27%), Postives = 126/147 (85.71%), Query Frame = 0
Query: 1 MASIRAFTIAAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
MASIRA +I A LL +SVIVSESRVARMDLGLDLGGVG+G+GTGVGLGLGGSGSGSGSGS
Sbjct: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60
Query: 61 GSASSSHSSSSSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSGYGAG 120
GS S S SSS+SSS SS S +GS+AGS AGSYAGS AGSGSGRNRNGGSGSGSGSG G G
Sbjct: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYG 120
Query: 121 SGRGGGEGYGEGHGYGEGHGYGNGGEN 148
+G G G G G G GYGEGHGYGN GEN
Sbjct: 121 AGSGRGSGSGGGEGYGEGHGYGNDGEN 147
BLAST of CmUC06G121090 vs. NCBI nr
Match:
XP_022135238.1 (putative glycine-rich cell wall structural protein 1 [Momordica charantia])
HSP 1 Score: 142.9 bits (359), Expect = 2.2e-30
Identity = 114/148 (77.03%), Postives = 125/148 (84.46%), Query Frame = 0
Query: 1 MASIRAFTIAAFLLGVS-VIVSESRVARMDLGLDLGGVGLGVGTGVGLGLG---GSGSGS 60
MA+IR F + AF+LG+S IVSE+RVAR DLG+DLGGVG+G+G G+GLG G GSG+G+
Sbjct: 1 MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGA 60
Query: 61 GSGSGSASSSHSSSSSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSG 120
GSGSGS SSS SSS SSSSSSGS AGSEAGSYAGSYAGSRAGSGSG NR GSGSGSG
Sbjct: 61 GSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNR----GSGSGSG 120
Query: 121 YGAGSGRGGGEGYGEGHGYGEGHGYGNG 145
YG GSGRG GEGYGEGHGYGEGHGYG G
Sbjct: 121 YGGGSGRGSGEGYGEGHGYGEGHGYGGG 144
BLAST of CmUC06G121090 vs. ExPASy TrEMBL
Match:
A0A1S3B8Y8 (putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103487315 PE=4 SV=1)
HSP 1 Score: 158.7 bits (400), Expect = 1.9e-35
Identity = 123/147 (83.67%), Postives = 126/147 (85.71%), Query Frame = 0
Query: 1 MASIRAFTIAAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
MASIR + FLLGVSVIVSESRVAR DLGLDLGG+GLGVGTGVGLGL GSGSG GSG
Sbjct: 1 MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGLDGSGSGFGSGP 60
Query: 61 GSASSSHSSSSSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSGYGAG 120
G SSS SSS SSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSG+G
Sbjct: 61 G--SSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTG---- 120
Query: 121 SGRGGGEGYGEGHGYGEGHGYGNGGEN 148
GGEGYGEGHGYGEGHGYGNGGEN
Sbjct: 121 ---NGGEGYGEGHGYGEGHGYGNGGEN 138
BLAST of CmUC06G121090 vs. ExPASy TrEMBL
Match:
A0A6J1E1T0 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430015 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 118/147 (80.27%), Postives = 126/147 (85.71%), Query Frame = 0
Query: 1 MASIRAFTIAAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
MASIRA +I A LL +SVIVSESRVARMDLGLDLGGVG+G+GTGVGLGLGGSGSGSGSGS
Sbjct: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60
Query: 61 GSASSSHSSSSSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSGYGAG 120
GS S S SSS+SSS SS S +GS+AGS AGSYAGS AGSGSGRNRNGGSGSGSGSG G G
Sbjct: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYG 120
Query: 121 SGRGGGEGYGEGHGYGEGHGYGNGGEN 148
+G G G G G G GYGEGHGYGN GEN
Sbjct: 121 AGSGRGSGSGGGEGYGEGHGYGNDGEN 147
BLAST of CmUC06G121090 vs. ExPASy TrEMBL
Match:
A0A6J1C497 (putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3673 GN=LOC111007250 PE=4 SV=1)
HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 114/148 (77.03%), Postives = 125/148 (84.46%), Query Frame = 0
Query: 1 MASIRAFTIAAFLLGVS-VIVSESRVARMDLGLDLGGVGLGVGTGVGLGLG---GSGSGS 60
MA+IR F + AF+LG+S IVSE+RVAR DLG+DLGGVG+G+G G+GLG G GSG+G+
Sbjct: 1 MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGA 60
Query: 61 GSGSGSASSSHSSSSSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSG 120
GSGSGS SSS SSS SSSSSSGS AGSEAGSYAGSYAGSRAGSGSG NR GSGSGSG
Sbjct: 61 GSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNR----GSGSGSG 120
Query: 121 YGAGSGRGGGEGYGEGHGYGEGHGYGNG 145
YG GSGRG GEGYGEGHGYGEGHGYG G
Sbjct: 121 YGGGSGRGSGEGYGEGHGYGEGHGYGGG 144
BLAST of CmUC06G121090 vs. ExPASy TrEMBL
Match:
A0A6J1E521 (putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1)
HSP 1 Score: 136.7 bits (343), Expect = 7.6e-29
Identity = 112/148 (75.68%), Postives = 122/148 (82.43%), Query Frame = 0
Query: 1 MASIRAFTIAAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
MASI + + FLL SVI+S++RVAR DLGLDLGG+G+G+GTG+GLGLGGSGSGSGSGS
Sbjct: 1 MASINSLIVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60
Query: 61 GSASSSHSSSSSSSS--SSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGS--GSG 120
GS S S SSSSSSSS SS S +GS AGS AGSYAGSRAGSGSG NRNGGSGSGS G G
Sbjct: 61 GSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGPNRNGGSGSGSGYGGG 120
Query: 121 YGAGSGRGGGEGYGEGHGYGEGHGYGNG 145
G GSG GGGEGYGEGHGYGEG GYG G
Sbjct: 121 SGRGSGNGGGEGYGEGHGYGEGRGYGGG 148
BLAST of CmUC06G121090 vs. ExPASy TrEMBL
Match:
A0A0A0LTK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1)
HSP 1 Score: 134.8 bits (338), Expect = 2.9e-28
Identity = 115/154 (74.68%), Postives = 123/154 (79.87%), Query Frame = 0
Query: 1 MASIRAFTI-AAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSG 60
MASI++ I LL S I+SE RVAR DLG+DLGGVG+G+GTG+GLG+GGSGSGSGSG
Sbjct: 1 MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60
Query: 61 SGSASSSHSSSS----SSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGS 120
SGS S S SSSS SSSSSSGS AGSEAGSYAGSYAGSRAGSGSG NRNG GSG GS
Sbjct: 61 SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNG--GSGYGS 120
Query: 121 GYGAGSGRGG-----GEGYGEGHGYGEGHGYGNG 145
GYG GSGRGG GEGYGEGHGYGEG GYG G
Sbjct: 121 GYGGGSGRGGGSNDNGEGYGEGHGYGEGRGYGGG 152
BLAST of CmUC06G121090 vs. TAIR 10
Match:
AT4G30460.1 (glycine-rich protein )
HSP 1 Score: 102.1 bits (253), Expect = 4.0e-22
Identity = 96/145 (66.21%), Postives = 108/145 (74.48%), Query Frame = 0
Query: 9 IAAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGSGS----AS 68
+ +L SV+VSESRVAR DLGLDLGG+G G+G G+G+G GGSGSG+G+GSGS +S
Sbjct: 12 LITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGGGSS 71
Query: 69 SSHSSSSSSSSSS---GSDAGSEAGSYAGSYAGSRAG--SGSGRNRNGGSGSGSGSGYGA 128
SS SSSSSSSSSS G DAGSEAGSYAGS+AGS +G SGSGR R G G G G G G
Sbjct: 72 SSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGGGGG 131
Query: 129 GSGRGGGEGYGEGHGYGEGHGYGNG 145
G GRGGG G G G GYGEG GYG G
Sbjct: 132 GGGRGGGGGSGNGEGYGEGGGYGGG 156
BLAST of CmUC06G121090 vs. TAIR 10
Match:
AT4G30450.1 (glycine-rich protein )
HSP 1 Score: 77.8 bits (190), Expect = 8.1e-15
Identity = 66/99 (66.67%), Postives = 80/99 (80.81%), Query Frame = 0
Query: 12 FLLGVSVI-----VSESRVARMDLGLDLGGVGLGVGTGVGLGLG---GSGSGSGSGSGSA 71
FLLG+ VI ++ESR+AR DLG+DLGG+G+G+G G+G+GLG GSG+G+GSGSGS
Sbjct: 8 FLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSG 67
Query: 72 SSSHSSSSSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSG 103
S S SSSSSSSSSS S +G AGS AGS+AGSRAGSGSG
Sbjct: 68 SRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038879815.1 | 4.6e-44 | 92.05 | putative per-hexamer repeat protein 5 [Benincasa hispida] | [more] |
XP_008443812.1 | 3.9e-35 | 83.67 | PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo] | [more] |
XP_023515818.1 | 1.1e-32 | 75.31 | putative glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita pepo ... | [more] |
XP_022921884.1 | 3.1e-32 | 80.27 | glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG658974... | [more] |
XP_022135238.1 | 2.2e-30 | 77.03 | putative glycine-rich cell wall structural protein 1 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3B8Y8 | 1.9e-35 | 83.67 | putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=... | [more] |
A0A6J1E1T0 | 1.5e-32 | 80.27 | glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... | [more] |
A0A6J1C497 | 1.1e-30 | 77.03 | putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3... | [more] |
A0A6J1E521 | 7.6e-29 | 75.68 | putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita mos... | [more] |
A0A0A0LTK9 | 2.9e-28 | 74.68 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1 | [more] |