CmUC06G121090 (gene) Watermelon (USVL531) v1

Overview
NameCmUC06G121090
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Descriptionglycine-rich cell wall structural protein 2-like
LocationCmU531Chr06: 24600257 .. 24600700 (-)
RNA-Seq ExpressionCmUC06G121090
SyntenyCmUC06G121090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCATCAGGGCCTTTACCATTGCCGCTTTCCTACTTGGTGTGTCCGTCATTGTATCAGAAAGCCGTGTTGCCAGGATGGACTTGGGCCTCGACCTTGGAGGAGTGGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGCTCTGGCTCCGGCTCCGGCTCCGGTTCTGCTTCCTCATCACACTCCTCAAGCTCCAGCTCCAGCTCCAGCTCCGGCTCCGACGCTGGGTCGGAAGCCGGTTCGTACGCTGGGTCTTATGCCGGGTCTCGGGCTGGATCCGGTTCGGGTAGGAACAGAAACGGTGGTTCCGGTTCTGGTTCCGGTTCAGGTTATGGTGCGGGTTCTGGGAGGGGTGGCGGTGAAGGATATGGAGAAGGCCATGGATACGGCGAGGGGCATGGTTATGGCAATGGCGGCGAAAACTGA

mRNA sequence

ATGGCTTCCATCAGGGCCTTTACCATTGCCGCTTTCCTACTTGGTGTGTCCGTCATTGTATCAGAAAGCCGTGTTGCCAGGATGGACTTGGGCCTCGACCTTGGAGGAGTGGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGCTCTGGCTCCGGCTCCGGCTCCGGTTCTGCTTCCTCATCACACTCCTCAAGCTCCAGCTCCAGCTCCAGCTCCGGCTCCGACGCTGGGTCGGAAGCCGGTTCGTACGCTGGGTCTTATGCCGGGTCTCGGGCTGGATCCGGTTCGGGTAGGAACAGAAACGGTGGTTCCGGTTCTGGTTCCGGTTCAGGTTATGGTGCGGGTTCTGGGAGGGGTGGCGGTGAAGGATATGGAGAAGGCCATGGATACGGCGAGGGGCATGGTTATGGCAATGGCGGCGAAAACTGA

Coding sequence (CDS)

ATGGCTTCCATCAGGGCCTTTACCATTGCCGCTTTCCTACTTGGTGTGTCCGTCATTGTATCAGAAAGCCGTGTTGCCAGGATGGACTTGGGCCTCGACCTTGGAGGAGTGGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGCTCTGGCTCCGGCTCCGGCTCCGGTTCTGCTTCCTCATCACACTCCTCAAGCTCCAGCTCCAGCTCCAGCTCCGGCTCCGACGCTGGGTCGGAAGCCGGTTCGTACGCTGGGTCTTATGCCGGGTCTCGGGCTGGATCCGGTTCGGGTAGGAACAGAAACGGTGGTTCCGGTTCTGGTTCCGGTTCAGGTTATGGTGCGGGTTCTGGGAGGGGTGGCGGTGAAGGATATGGAGAAGGCCATGGATACGGCGAGGGGCATGGTTATGGCAATGGCGGCGAAAACTGA

Protein sequence

MASIRAFTIAAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGSGSASSSHSSSSSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSGYGAGSGRGGGEGYGEGHGYGEGHGYGNGGEN
Homology
BLAST of CmUC06G121090 vs. NCBI nr
Match: XP_038879815.1 (putative per-hexamer repeat protein 5 [Benincasa hispida])

HSP 1 Score: 188.3 bits (477), Expect = 4.6e-44
Identity = 139/151 (92.05%), Postives = 140/151 (92.72%), Query Frame = 0

Query: 1   MASIRAFTIAAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLG----GSGSGS 60
           MASIRA TI AFLLGVSVIVSE RVARM+LGLDLGGVGLGVGTGVGLGLG    GSGSGS
Sbjct: 1   MASIRAVTILAFLLGVSVIVSEGRVARMNLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSASSSHSSSSSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSG 120
           GSGSGS SSS SSS SSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSG
Sbjct: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSG 120

Query: 121 YGAGSGRGGGEGYGEGHGYGEGHGYGNGGEN 148
           YGAGSGRG GEGYGEGHGYGEGHGYGNGGEN
Sbjct: 121 YGAGSGRGSGEGYGEGHGYGEGHGYGNGGEN 151

BLAST of CmUC06G121090 vs. NCBI nr
Match: XP_008443812.1 (PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 158.7 bits (400), Expect = 3.9e-35
Identity = 123/147 (83.67%), Postives = 126/147 (85.71%), Query Frame = 0

Query: 1   MASIRAFTIAAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
           MASIR   +  FLLGVSVIVSESRVAR DLGLDLGG+GLGVGTGVGLGL GSGSG GSG 
Sbjct: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGLDGSGSGFGSGP 60

Query: 61  GSASSSHSSSSSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSGYGAG 120
           G  SSS SSS SSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSG+G    
Sbjct: 61  G--SSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTG---- 120

Query: 121 SGRGGGEGYGEGHGYGEGHGYGNGGEN 148
               GGEGYGEGHGYGEGHGYGNGGEN
Sbjct: 121 ---NGGEGYGEGHGYGEGHGYGNGGEN 138

BLAST of CmUC06G121090 vs. NCBI nr
Match: XP_023515818.1 (putative glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-32
Identity = 122/162 (75.31%), Postives = 129/162 (79.63%), Query Frame = 0

Query: 1   MASIRAFTIAAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
           MASIRA +I A LL +SVIVSESR+ARMDLGLDLGGVG+G+GTGVGLGLGGSGSGSGSGS
Sbjct: 1   MASIRAVSILALLLALSVIVSESRIARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60

Query: 61  GSASSSHSSSSSSSSSSGSDAGSEAGSY----------------AGSYAGSRAGSGSGRN 120
            SASSSHSSSSSS S +GS+AGS AGSY                AGSYAGSRAGS SGRN
Sbjct: 61  SSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGSGAGSEAGSYAGSRAGSASGRN 120

Query: 121 RNGGSGSGS--GSGYGAGSGRGGGEGYGEGHGYGEGHGYGNG 145
           RNGGSGSGS  G G G GSG GGGEGYGEGHGYGEG GYG G
Sbjct: 121 RNGGSGSGSGYGGGSGRGSGNGGGEGYGEGHGYGEGRGYGGG 162

BLAST of CmUC06G121090 vs. NCBI nr
Match: XP_022921884.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG6589744.1 hypothetical protein SDJN03_15167, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.1 bits (375), Expect = 3.1e-32
Identity = 118/147 (80.27%), Postives = 126/147 (85.71%), Query Frame = 0

Query: 1   MASIRAFTIAAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
           MASIRA +I A LL +SVIVSESRVARMDLGLDLGGVG+G+GTGVGLGLGGSGSGSGSGS
Sbjct: 1   MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60

Query: 61  GSASSSHSSSSSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSGYGAG 120
           GS S S SSS+SSS SS S +GS+AGS AGSYAGS AGSGSGRNRNGGSGSGSGSG G G
Sbjct: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYG 120

Query: 121 SGRGGGEGYGEGHGYGEGHGYGNGGEN 148
           +G G G G G G GYGEGHGYGN GEN
Sbjct: 121 AGSGRGSGSGGGEGYGEGHGYGNDGEN 147

BLAST of CmUC06G121090 vs. NCBI nr
Match: XP_022135238.1 (putative glycine-rich cell wall structural protein 1 [Momordica charantia])

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-30
Identity = 114/148 (77.03%), Postives = 125/148 (84.46%), Query Frame = 0

Query: 1   MASIRAFTIAAFLLGVS-VIVSESRVARMDLGLDLGGVGLGVGTGVGLGLG---GSGSGS 60
           MA+IR F + AF+LG+S  IVSE+RVAR DLG+DLGGVG+G+G G+GLG G   GSG+G+
Sbjct: 1   MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGA 60

Query: 61  GSGSGSASSSHSSSSSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSG 120
           GSGSGS SSS SSS SSSSSSGS AGSEAGSYAGSYAGSRAGSGSG NR    GSGSGSG
Sbjct: 61  GSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNR----GSGSGSG 120

Query: 121 YGAGSGRGGGEGYGEGHGYGEGHGYGNG 145
           YG GSGRG GEGYGEGHGYGEGHGYG G
Sbjct: 121 YGGGSGRGSGEGYGEGHGYGEGHGYGGG 144

BLAST of CmUC06G121090 vs. ExPASy TrEMBL
Match: A0A1S3B8Y8 (putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103487315 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.9e-35
Identity = 123/147 (83.67%), Postives = 126/147 (85.71%), Query Frame = 0

Query: 1   MASIRAFTIAAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
           MASIR   +  FLLGVSVIVSESRVAR DLGLDLGG+GLGVGTGVGLGL GSGSG GSG 
Sbjct: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGLDGSGSGFGSGP 60

Query: 61  GSASSSHSSSSSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSGYGAG 120
           G  SSS SSS SSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSG+G    
Sbjct: 61  G--SSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTG---- 120

Query: 121 SGRGGGEGYGEGHGYGEGHGYGNGGEN 148
               GGEGYGEGHGYGEGHGYGNGGEN
Sbjct: 121 ---NGGEGYGEGHGYGEGHGYGNGGEN 138

BLAST of CmUC06G121090 vs. ExPASy TrEMBL
Match: A0A6J1E1T0 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430015 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 118/147 (80.27%), Postives = 126/147 (85.71%), Query Frame = 0

Query: 1   MASIRAFTIAAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
           MASIRA +I A LL +SVIVSESRVARMDLGLDLGGVG+G+GTGVGLGLGGSGSGSGSGS
Sbjct: 1   MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60

Query: 61  GSASSSHSSSSSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSGYGAG 120
           GS S S SSS+SSS SS S +GS+AGS AGSYAGS AGSGSGRNRNGGSGSGSGSG G G
Sbjct: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYG 120

Query: 121 SGRGGGEGYGEGHGYGEGHGYGNGGEN 148
           +G G G G G G GYGEGHGYGN GEN
Sbjct: 121 AGSGRGSGSGGGEGYGEGHGYGNDGEN 147

BLAST of CmUC06G121090 vs. ExPASy TrEMBL
Match: A0A6J1C497 (putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3673 GN=LOC111007250 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 114/148 (77.03%), Postives = 125/148 (84.46%), Query Frame = 0

Query: 1   MASIRAFTIAAFLLGVS-VIVSESRVARMDLGLDLGGVGLGVGTGVGLGLG---GSGSGS 60
           MA+IR F + AF+LG+S  IVSE+RVAR DLG+DLGGVG+G+G G+GLG G   GSG+G+
Sbjct: 1   MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGA 60

Query: 61  GSGSGSASSSHSSSSSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSG 120
           GSGSGS SSS SSS SSSSSSGS AGSEAGSYAGSYAGSRAGSGSG NR    GSGSGSG
Sbjct: 61  GSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNR----GSGSGSG 120

Query: 121 YGAGSGRGGGEGYGEGHGYGEGHGYGNG 145
           YG GSGRG GEGYGEGHGYGEGHGYG G
Sbjct: 121 YGGGSGRGSGEGYGEGHGYGEGHGYGGG 144

BLAST of CmUC06G121090 vs. ExPASy TrEMBL
Match: A0A6J1E521 (putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.6e-29
Identity = 112/148 (75.68%), Postives = 122/148 (82.43%), Query Frame = 0

Query: 1   MASIRAFTIAAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
           MASI +  +  FLL  SVI+S++RVAR DLGLDLGG+G+G+GTG+GLGLGGSGSGSGSGS
Sbjct: 1   MASINSLIVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60

Query: 61  GSASSSHSSSSSSSS--SSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGS--GSG 120
           GS S S SSSSSSSS  SS S +GS AGS AGSYAGSRAGSGSG NRNGGSGSGS  G G
Sbjct: 61  GSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGPNRNGGSGSGSGYGGG 120

Query: 121 YGAGSGRGGGEGYGEGHGYGEGHGYGNG 145
            G GSG GGGEGYGEGHGYGEG GYG G
Sbjct: 121 SGRGSGNGGGEGYGEGHGYGEGRGYGGG 148

BLAST of CmUC06G121090 vs. ExPASy TrEMBL
Match: A0A0A0LTK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.9e-28
Identity = 115/154 (74.68%), Postives = 123/154 (79.87%), Query Frame = 0

Query: 1   MASIRAFTI-AAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSG 60
           MASI++  I    LL  S I+SE RVAR DLG+DLGGVG+G+GTG+GLG+GGSGSGSGSG
Sbjct: 1   MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60

Query: 61  SGSASSSHSSSS----SSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGS 120
           SGS S S SSSS    SSSSSSGS AGSEAGSYAGSYAGSRAGSGSG NRNG  GSG GS
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNG--GSGYGS 120

Query: 121 GYGAGSGRGG-----GEGYGEGHGYGEGHGYGNG 145
           GYG GSGRGG     GEGYGEGHGYGEG GYG G
Sbjct: 121 GYGGGSGRGGGSNDNGEGYGEGHGYGEGRGYGGG 152

BLAST of CmUC06G121090 vs. TAIR 10
Match: AT4G30460.1 (glycine-rich protein )

HSP 1 Score: 102.1 bits (253), Expect = 4.0e-22
Identity = 96/145 (66.21%), Postives = 108/145 (74.48%), Query Frame = 0

Query: 9   IAAFLLGVSVIVSESRVARMDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGSGS----AS 68
           +   +L  SV+VSESRVAR DLGLDLGG+G G+G G+G+G GGSGSG+G+GSGS    +S
Sbjct: 12  LITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGGGSS 71

Query: 69  SSHSSSSSSSSSS---GSDAGSEAGSYAGSYAGSRAG--SGSGRNRNGGSGSGSGSGYGA 128
           SS SSSSSSSSSS   G DAGSEAGSYAGS+AGS +G  SGSGR R  G G G G G G 
Sbjct: 72  SSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGGGGG 131

Query: 129 GSGRGGGEGYGEGHGYGEGHGYGNG 145
           G GRGGG G G G GYGEG GYG G
Sbjct: 132 GGGRGGGGGSGNGEGYGEGGGYGGG 156

BLAST of CmUC06G121090 vs. TAIR 10
Match: AT4G30450.1 (glycine-rich protein )

HSP 1 Score: 77.8 bits (190), Expect = 8.1e-15
Identity = 66/99 (66.67%), Postives = 80/99 (80.81%), Query Frame = 0

Query: 12  FLLGVSVI-----VSESRVARMDLGLDLGGVGLGVGTGVGLGLG---GSGSGSGSGSGSA 71
           FLLG+ VI     ++ESR+AR DLG+DLGG+G+G+G G+G+GLG   GSG+G+GSGSGS 
Sbjct: 8   FLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSG 67

Query: 72  SSSHSSSSSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSG 103
           S S SSSSSSSSSS S +G  AGS AGS+AGSRAGSGSG
Sbjct: 68  SRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038879815.14.6e-4492.05putative per-hexamer repeat protein 5 [Benincasa hispida][more]
XP_008443812.13.9e-3583.67PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo][more]
XP_023515818.11.1e-3275.31putative glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita pepo ... [more]
XP_022921884.13.1e-3280.27glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG658974... [more]
XP_022135238.12.2e-3077.03putative glycine-rich cell wall structural protein 1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3B8Y81.9e-3583.67putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=... [more]
A0A6J1E1T01.5e-3280.27glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1C4971.1e-3077.03putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3... [more]
A0A6J1E5217.6e-2975.68putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita mos... [more]
A0A0A0LTK92.9e-2874.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G30460.14.0e-2266.21glycine-rich protein [more]
AT4G30450.18.1e-1566.67glycine-rich protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..84
NoneNo IPR availablePANTHERPTHR38934:SF13GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-RELATEDcoord: 1..144
NoneNo IPR availablePANTHERPTHR38934HYPHALLY REGULATED CELL WALL PROTEIN 1coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC06G121090.1CmUC06G121090.1mRNA