Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTTTCAAGAAGTAACAAAAAGGAAGGTTGAAGATTGCGGCTAATGGGCTCGCAGTCGTCGCAACAAAGTCGAGTCGACATATTTTCAAAGAGAAAAAGAAGCGGAAAACAGTCGACGCTGCTCTTACTGCGAGTCGCCGACGCCCAAGGCGGAGCGTTTGTGTTGGAGGGAACATGGAGAGGGCTGAGGAAGGAACGTCGTCCACACCATACGCCGGAGGAGGAGTCGGAGGAAAAGTTAGGAAGCCAACCTCAAGAAAGCCGCCGCCGACCCCTTACGCTCGCCCCGTGCATGACCAATCGCAGAGGCGCTGGCTTTCAAAGCTCGTTGATCCGGCCTACCGGCTCATCACCGGCGGTGCCACCCGACTGCTTCCCTATCTGTTCTCGAAACCACTGCCCTCCAACGCCCTTCCGTCTCCCGGAAACGTAGATCAAGGTCATTTGCGCCCTCCCCCAATCTTCTCTCGTTAAATTTTATATCTACTGCCAACTACTTAGGGTTTTGGACATCGCATTATCTCGGTTGAAATCAATGTCCTTCTTATACTCTCTATTTTAGTTCTAGGCATTTGGGGGAAATTGATGGCCTTTCTGAAGGTAGTTACTAGTGAGTAGTGAATAGTGAGGTTTCCAATTTTTTCCATTAGTAAACATCTTGTTGCATTTACAAAGCAACTTTTCTGATTCACATAAGTGAAAGTAGTGTAGCCATGTTTTGCCATGCTCTTGCATTTATCTATAGAAATTGTTCACATCAGACTCCAGAGAATGTTACTACTTGTTCTGTTTATACTACAACTCTACCATGAGCGGTCTTTGTCATAGAATTGGTGGGAAAAAGCGAAGGACTTAGATTTGCCTGCCTTCGAGTGTTGTTTTGTTCATTCTCTAGTAAGATCAGTTGTTGATGATGAATTCTTTTTGAGCAGATAAAGTGGAGGCAGAGGTGGAGGATAACGTCTCTGGAGAAGAAGAACCCCACAATGTAAATGTAGCTCTAATGCTCTATTTTATATGTTTGTTTGTTTGTTTCTTTTTTTTTTTTTGGGTTAAAGTTTTTTTTTTTTTTTTCCTGTTCCATGGCCATGAGTACCTTCTTATTTTATGCCATCTTACCAATGAGTATCTGTGTATGTCTTTGATAACAGACAAATGAACAATCGATACTCAAAAGTGCTAACTGGGGTTTTATCATTAAATGATATAGAAGTCTATGGAAATAAAGTCATAGGCTAGGATTACCTAATCTTAACAGCCACTTTTCACTGGTGACCTTACTTTGATTGGTGTGTACTATGTACTGTAGAAGGTTATAAATGTTTTGACCTTGCTAGTGCGCTCATGCTTGTCTGCCAGTTGAAGTTATTGATCTTCCGTTAAATTATGACATTCAGTCTGATGTTCACATTTGTTATCTGCAAGAAATCTGATAGTTTACTAGTTAAAATTTTGTTTACCTGATGTAATTGTTTTTTCTCTTGTTTCCCATTCCTGTATAGCAATATTCTTATATTGATCCTGATGGCTTGGAGTTACAAAATCACATTGCTTATCCATTCTTTTTGGTTAACACCCACGGGAATGATTTCCTATGTCCTGTTTTTGTTTTCATCTAATTCAATTTTGCACTTTTACTTTTCATTTGAAAAATTATATGCATGCAGTAATGTGATTCATTAACATACATTTTCGTTCGTTTCTGGCAGCAACGGGTCCCTACCTTATTTGGATTACCTGGTCCTAGTGGAGAGGCAAATATATCAGAGAACAATTTTGATTTTAATGGCCGCAAAAAGGACAGAGAAAATGATGCATTAGCTGGGAATAGAAAATTTGATGTTGAAAAATGGATCCAAGAAAAAACATTTTCCCGGTAAATTTCAGAGTTTGACTTTTTTTTCTGTTTTATCAGATGAAGTGATCTGTCATTTATTGTCTCAGAAACATGAACATGGCCACAATCCATGATATTGATATAGATACGATGACTCATTATCTAAGATATTTAGACAGAGACATGACAAGAACTGGTTCTGTAAGACATCTATTTTCTAATTATACTTGAACATTCGAACCTTTTTCAATAATTCAGTCAAAAAGTTTATTTCAATCTTAAAATATTGGTGTTTGGAAGTCAATTTGAAAGTGACATAATATACAATATCTTAAAGAAGTTGAAGAAGCCAATTATGTTTACCTAACTGTGCAATTCCTTATGGTACAATTATGTTTTTCAATCATATGCTTAAATAAAAGGTTCAATATTTTTCTTTCTTAAAATTTATTTATTTTTCTCCCATCTTTTTTATGTCGATTATTTTATTTTATATATTTTTTAAAAAACGGTAAGTGCTCAACAATCCCAACACTTGCTCGACTTGTATTCGAGTGTCCACATCATGTATGACACAAACATGTTCCCTAAACTACATATTGCAGCTTCAACTTTTTTTCATCACAGACTTCAGTTGAAGTGTTTCCTCACTAAAATGCAACAGGATGGAACGTTATTGTCAAGCAACTTATTTTAATCATGATTCCATGGTGGAAGTACTTTACCCTGCTATGAATAAATAGGTTATTTTCTTCTGAGGTTGCATCCTAGGGACGGTCAAATGTCCATATGTAGTAGTCTATAGTCTTGATAATTTCATTTCTAATCATATTTCTATTGTCTAAACTGGTAGTGGTGCCATACGGCCCATACCTCTATGTCCAAGGGATGGTCAAATGTCAAATATTAGTGTTCTACCACCAACTGGTAGTGGCACAATGCCTCTATGTTTCTTTTGAACCTCTTTTACATTTTATACAGCCATATAGTCCGTTCGAGTACTGGATTTCTCTAAATTGGCCGATGATATACTCTGCAGGGATGAAGTGAGTCGTTTATTAGAGATACTACAATCAAGGGCTCTTGAACCTTCTAACACACTGGTAGGCAATACATTTTCACCACAGACCATTGAAAAACAAGTTGAGCAGCCATCTGTTGCAAATAGAGTTCTAAAAATGTCTCGTGAAGGAAAGCAAGAAGATTTGGAGAGAGCTACATTGGGAAACTTAACTCCTCATCCACATTCATCGGTCAGTAGGGTGAATCCTTGAGTAGGTTCTGTAGAATATAAGTAAAAGTAAATATTTCATGGCTGGCTGTTATGAACTTGGAACTTCTTTTACATCTGTTGGTCTAATGACTGTCAATTTGCCAAATTGCTTTGTTGTTTCACACATTGGTGCTGATTGTAGGATTATCTCCCATTTTCTTGATATCTTATGTTCCTTTGATAGGTTTTATTAGGCCATGCTAGTATGTAGTGATTAGGTGCAATGCTGTTCCAGAGACAGGGTTCTTTTTTTTATTATTACTATTTTTTTGTATTAATTAATAGTTTAATGTATAAAACACCAAGGAGATTGGTTCAGTCTTGGGATGGTCAAAAACTAAATCAAACTGAATGCCTTACCCTCACTACTCGATTACTAGGTTGTCATACTTCATATTTATATTTTTACTAAGTTATTGTTTTAATACTCTTCTTATTTCTTAGTAATTAAGTTAGGTAGAAGATACTCTGATGATCAAATTGTAAAACCAGTGCTGATGAGACATTCATTAATCAAAATAATAAAATGAATCATTTCTCTGTTAGGAACATGGTAAATTTGGTTGATGTTTGAAAGTCAATGGGAAAATAAGAAGTTAAAGGTCTAGGATGGGGATTTGTAGAAGAATCTACAAATTTTCATTGCCAAAGTCTTCAATATTTGTTCACTGTTTAGAGCTTGTTATTCACGTTTTTCCTGCCTTTAAGAATAATTCATCATTGGGTGTACTTTAGCAGAAACTAAGTGACATTGGAGCATCACCTGTGGATATTGCAAGAGCATACATGAGCAACCGAAAATCTGAACCAGGCTTACTTTCTGAAAAGATACCAGATGATGAAAGGGCTTCACTTCATGGTGATCATCAAATGTCTAAGCCTTTTATTCCATCGATGTCCCCCAATCCATCAACTTGTTGGCCTGGTGCCATGTCAGAAAGTCAGCGTGGTTATTTAACTCCAAGGAGTCAAAGAGGAGGTAGATTTGGTCTTCATACTTTCCCTCGGACTCCATATTCTAGGAATATCTTTTCAAAGTCCAAGTCCAAGGTATGTAGACATGTCTTCAATTCCATTTTTTTTCTTTTTTTTGGGTCGTGAGAGTGTATGTACAGTACGCAGACTGTATATGATTAACCACTCCTTTACATGTGAACAGCTAACTCAGTTGCAAGGAGACACCCAAAAGTTTGTGAATACACCATCACCGCTCTGGCAGCAGTCACGAACTCCAGCATATTCTCTGGTAATTTCTTTTATTATTAGCCATTGCCAACAGACCAAACACACAATTGTAGTTTCTTTTATCATTAAGCCCTCAGTGGCTAAAAACCAATAAAAAGACCATAGGAACTCTTGTTGAGAAGTTCTTTTGTAGCATTTGAAATGAGCTTGATTACTGAATATTTTAATTTATGTCCCTAATGAGCGGGCATTTTAAGGTAAAGGTAGTATAAAAACCGATCATTTTAGCAAGAAGAATAAATCTGAAATATTATAGGGAACTGCAGTATCCTTTTTTGTGCATGTATGCATTACAGGGTAGAGCTAGAATTTTTTGTTGAGGATGGAAAAATTTTACATTCAAACTCCTAAAATACATTATTTTAATTCTTAGAGGAAAAATTATAATTTAAAATTTCATCTTTTCTTTAATGTTTGCATGGTGCCCATATTGAGCATGTGATTTATATGTTATTCTTGACCCGTCAACCTTTTCTTTGTCCAAAATGTTCAATTATCCTTGATCATTTGTTTCTTTCATGCTCTTGCTGGTAGGATGTGTCTTGAGCTAGTGGTTTATCCATTACCTCGGTGCCTTTGTTAAAATGCTTGCTATGGTTGCTGTTGTGCTGCTGTTTTATCAAGCCTAAGTATAGTTGTTTTGGCATAACCCTGATATAAACTAGTTAGATTTTTCATCCAAAAACTAGAATTTGATGGATTAGCTACTCGTGTTTCCTAATCCATGGTGCCTATAGGTGGTTGTTTAATTTTTTATTTTAGGATAACTCATTCTCAGGAGGAGTTTTTTTAGTTCTGGGGCATATTCTTGTGTTTAAATATCTAACTGTACATAAGTTCTTAATGAAACTTTCGATACTGAATATTGCATTGTTGCTTCTTATGCATACTTTGCTACTGGTACTTATTAGCTATTTATTTATAATGTGCTGACCTCAAGTTCCTGGGGGTTCTTACTTCTATCATTCCTTTTTTTGTTTTTTGTTTTTTGTTTTTTATTTTTCTGTTTGTTGATATAGATGCCATCAAACAATGATCCATTAGACGAGGCAACTGGTTCCGTTGGACCAATTCGTAGGCTTCGGCATAAGGCATCTGCAGTTACTAATTCCAGACGATCTGCTTACTTTTATCCAAACCGACAACCAGAGATGAAGGTAGAAAACTCCAATACTTCGGAAGGCATTTTACCTGATATGAAGAAGAATCTGGAATTTGAAGGAGCAAGCACCATTCCTCTATCACAATCAGCAGTAAACAACAGCTCTGACTCAAGTCCTCTGATGGTCCGTCCACAGTCCAGTCAGGTTGCTAGGACAATCCTAGAGCATATTACTAGAAACCCACCTACTCCTAAAGAAAAGACGGAAGAGTTAAAGAGAGCAATTCAATGGAAGAAAACCTCATCTTCTAATGTACAAACGGTCAAGCCAAACGAAACCAGTAATTTGGCCGTAGAGTTAGATTCTCACCAAAAATCAAACCAAGTAGATCAGAACTGTAACCCCCAATCGAGTGAAAAGGGAAAAACCATGTCCATGATTCTTCCAAAGGAGAGTTCTGGCAGAAATTCTGATGCTGCAATCCAAAATCCTTTCGGTCCAAAGTTTAGACTTAGCAATGCTGAACCAAAACACAAGGATGATGCAGGCTTAAATGTTGGTAGCTCATTGCCTAAGGTATCACTGCAACTTTGCAGTTGGTTTTAATTCGTTGATGCATTATTGACCGACTTACAGATGCTTATTGTGTATGTATTTGAAGTTACTAGCATAAGCTTGAAGAGTTTTTAATTTGTGGTTGAATTTTTGGGCAGGTTGTTCCAAAGACCGTTCCCGTTCCAGCTCTTGGATCCAAAATGGGGGCTCAAATGAAGCCTTCCCCTTCCCTTGGAGGCAAACCTGTTTTTACATCCATTACCATCAACAAGCCTGAGTCAAAATGGACATTTTCTTCCGATAGTGGTTCGGCGTTTACTTTCCCTGTTTCCGGAGCATCCTCAGGAATGCTATCAGAACCACCAACACCATCCATCTTCCCATCAACCAGCCTTGGGGGTAGTCAGCCTCTATTACTGAAGCCCGAGACTCCAATTCCTTCATACAGCTTTGGCTCAAAGAAGTCCAGCCGTACCCTTATTTTCTCATTCCCTTCAACAAACAGCGATAAAATCCTCACTGAAGCCTCAATTAAGTTCAGCTTCGGATCCAAGGATCATACAAGACTTTCCTTCAGTTCTGTTGGGAAAGATGCAGTTTGTTGCTAACTGATTAGACTTGTTAAGAAACTTGTGGCATGGCAAATACCTTATTATTATTTTTTTTTATATAAGAAAACAACAAAATATGAAGTGCAAATTCAATCAAGATAGAAAAAATAGCTTGTGTGCCAGTTGATGGCGTTCGTTTATGTA
mRNA sequence
CGTTTCAAGAAGTAACAAAAAGGAAGGTTGAAGATTGCGGCTAATGGGCTCGCAGTCGTCGCAACAAAGTCGAGTCGACATATTTTCAAAGAGAAAAAGAAGCGGAAAACAGTCGACGCTGCTCTTACTGCGAGTCGCCGACGCCCAAGGCGGAGCGTTTGTGTTGGAGGGAACATGGAGAGGGCTGAGGAAGGAACGTCGTCCACACCATACGCCGGAGGAGGAGTCGGAGGAAAAGTTAGGAAGCCAACCTCAAGAAAGCCGCCGCCGACCCCTTACGCTCGCCCCGTGCATGACCAATCGCAGAGGCGCTGGCTTTCAAAGCTCGTTGATCCGGCCTACCGGCTCATCACCGGCGGTGCCACCCGACTGCTTCCCTATCTGTTCTCGAAACCACTGCCCTCCAACGCCCTTCCGTCTCCCGGAAACGTAGATCAAGATAAAGTGGAGGCAGAGGTGGAGGATAACGTCTCTGGAGAAGAAGAACCCCACAATCAACGGGTCCCTACCTTATTTGGATTACCTGGTCCTAGTGGAGAGGCAAATATATCAGAGAACAATTTTGATTTTAATGGCCGCAAAAAGGACAGAGAAAATGATGCATTAGCTGGGAATAGAAAATTTGATGTTGAAAAATGGATCCAAGAAAAAACATTTTCCCGAAACATGAACATGGCCACAATCCATGATATTGATATAGATACGATGACTCATTATCTAAGATATTTAGACAGAGACATGACAAGAACTGTCAAAAAGTTTATTTCAATCTTAAAATATTGGTGTTTGGAAGTCAATTTGAAAGTGACTGCTCAACAATCCCAACACTTGCTCGACTTGTATTCGAGTGTCCACATCATGTATGACACAAACATGTTCCCTAAACTACATATTGCAGCTTCAACTTTTTTTCATCACAGACTTCAGTTGAAGTGTTTCCTCACTAAAATGCAACAGGATGGAACGTTGCATCCTAGGGACGGTCAAATGTCCATATTGGTGCCATACGGCCCATACCTCTATGTCCAAGGGATGGTCAAATGTCAAATATTAGTGTTCTACCACCAACTGGTAGTGGCACAATGCCTCTATTCCGTTCGAGTACTGGATTTCTCTAAATTGGCCGATGATATACTCTGCAGGGATGAAGTGAGTCGTTTATTAGAGATACTACAATCAAGGGCTCTTGAACCTTCTAACACACTGGTAGGCAATACATTTTCACCACAGACCATTGAAAAACAAGTTGAGCAGCCATCTGTTGCAAATAGAGTTCTAAAAATGTCTCGTGAAGGAAAGCAAGAAGATTTGGAGAGAGCTACATTGGGAAACTTAACTCCTCATCCACATTCATCGGTCAGTAGGAAACTAAGTGACATTGGAGCATCACCTGTGGATATTGCAAGAGCATACATGAGCAACCGAAAATCTGAACCAGGCTTACTTTCTGAAAAGATACCAGATGATGAAAGGGCTTCACTTCATGGTGATCATCAAATGTCTAAGCCTTTTATTCCATCGATGTCCCCCAATCCATCAACTTGTTGGCCTGGTGCCATGTCAGAAAGTCAGCGTGGTTATTTAACTCCAAGGAGTCAAAGAGGAGGTAGATTTGGTCTTCATACTTTCCCTCGGACTCCATATTCTAGGAATATCTTTTCAAAGTCCAAGTCCAAGAGTGTATGTACAGTACGCAGACTGTATATGATTAACCACTCCTTTACATGTGAACAGCTAACTCAGTTGCAAGGAGACACCCAAAAGTTTGTGAATACACCATCACCGCTCTGGCAGCAGTCACGAACTCCAGCATATTCTCTGATGCCATCAAACAATGATCCATTAGACGAGGCAACTGGTTCCGTTGGACCAATTCGTAGGCTTCGGCATAAGGCATCTGCAGTTACTAATTCCAGACGATCTGCTTACTTTTATCCAAACCGACAACCAGAGATGAAGGTAGAAAACTCCAATACTTCGGAAGGCATTTTACCTGATATGAAGAAGAATCTGGAATTTGAAGGAGCAAGCACCATTCCTCTATCACAATCAGCAGTAAACAACAGCTCTGACTCAAGTCCTCTGATGGTCCGTCCACAGTCCAGTCAGGTTGCTAGGACAATCCTAGAGCATATTACTAGAAACCCACCTACTCCTAAAGAAAAGACGGAAGAGTTAAAGAGAGCAATTCAATGGAAGAAAACCTCATCTTCTAATGTACAAACGGTCAAGCCAAACGAAACCAGTAATTTGGCCGTAGAGTTAGATTCTCACCAAAAATCAAACCAAGTAGATCAGAACTGTAACCCCCAATCGAGTGAAAAGGGAAAAACCATGTCCATGATTCTTCCAAAGGAGAGTTCTGGCAGAAATTCTGATGCTGCAATCCAAAATCCTTTCGGTCCAAAGTTTAGACTTAGCAATGCTGAACCAAAACACAAGGATGATGCAGGCTTAAATGTTGGTAGCTCATTGCCTAAGGTTGTTCCAAAGACCGTTCCCGTTCCAGCTCTTGGATCCAAAATGGGGGCTCAAATGAAGCCTTCCCCTTCCCTTGGAGGCAAACCTGTTTTTACATCCATTACCATCAACAAGCCTGAGTCAAAATGGACATTTTCTTCCGATAGTGGTTCGGCGTTTACTTTCCCTGTTTCCGGAGCATCCTCAGGAATGCTATCAGAACCACCAACACCATCCATCTTCCCATCAACCAGCCTTGGGGGTAGTCAGCCTCTATTACTGAAGCCCGAGACTCCAATTCCTTCATACAGCTTTGGCTCAAAGAAGTCCAGCCGTACCCTTATTTTCTCATTCCCTTCAACAAACAGCGATAAAATCCTCACTGAAGCCTCAATTAAGTTCAGCTTCGGATCCAAGGATCATACAAGACTTTCCTTCAGTTCTGTTGGGAAAGATGCAGTTTGTTGCTAACTGATTAGACTTGTTAAGAAACTTGTGGCATGGCAAATACCTTATTATTATTTTTTTTTATATAAGAAAACAACAAAATATGAAGTGCAAATTCAATCAAGATAGAAAAAATAGCTTGTGTGCCAGTTGATGGCGTTCGTTTATGTA
Coding sequence (CDS)
ATGGAGAGGGCTGAGGAAGGAACGTCGTCCACACCATACGCCGGAGGAGGAGTCGGAGGAAAAGTTAGGAAGCCAACCTCAAGAAAGCCGCCGCCGACCCCTTACGCTCGCCCCGTGCATGACCAATCGCAGAGGCGCTGGCTTTCAAAGCTCGTTGATCCGGCCTACCGGCTCATCACCGGCGGTGCCACCCGACTGCTTCCCTATCTGTTCTCGAAACCACTGCCCTCCAACGCCCTTCCGTCTCCCGGAAACGTAGATCAAGATAAAGTGGAGGCAGAGGTGGAGGATAACGTCTCTGGAGAAGAAGAACCCCACAATCAACGGGTCCCTACCTTATTTGGATTACCTGGTCCTAGTGGAGAGGCAAATATATCAGAGAACAATTTTGATTTTAATGGCCGCAAAAAGGACAGAGAAAATGATGCATTAGCTGGGAATAGAAAATTTGATGTTGAAAAATGGATCCAAGAAAAAACATTTTCCCGAAACATGAACATGGCCACAATCCATGATATTGATATAGATACGATGACTCATTATCTAAGATATTTAGACAGAGACATGACAAGAACTGTCAAAAAGTTTATTTCAATCTTAAAATATTGGTGTTTGGAAGTCAATTTGAAAGTGACTGCTCAACAATCCCAACACTTGCTCGACTTGTATTCGAGTGTCCACATCATGTATGACACAAACATGTTCCCTAAACTACATATTGCAGCTTCAACTTTTTTTCATCACAGACTTCAGTTGAAGTGTTTCCTCACTAAAATGCAACAGGATGGAACGTTGCATCCTAGGGACGGTCAAATGTCCATATTGGTGCCATACGGCCCATACCTCTATGTCCAAGGGATGGTCAAATGTCAAATATTAGTGTTCTACCACCAACTGGTAGTGGCACAATGCCTCTATTCCGTTCGAGTACTGGATTTCTCTAAATTGGCCGATGATATACTCTGCAGGGATGAAGTGAGTCGTTTATTAGAGATACTACAATCAAGGGCTCTTGAACCTTCTAACACACTGGTAGGCAATACATTTTCACCACAGACCATTGAAAAACAAGTTGAGCAGCCATCTGTTGCAAATAGAGTTCTAAAAATGTCTCGTGAAGGAAAGCAAGAAGATTTGGAGAGAGCTACATTGGGAAACTTAACTCCTCATCCACATTCATCGGTCAGTAGGAAACTAAGTGACATTGGAGCATCACCTGTGGATATTGCAAGAGCATACATGAGCAACCGAAAATCTGAACCAGGCTTACTTTCTGAAAAGATACCAGATGATGAAAGGGCTTCACTTCATGGTGATCATCAAATGTCTAAGCCTTTTATTCCATCGATGTCCCCCAATCCATCAACTTGTTGGCCTGGTGCCATGTCAGAAAGTCAGCGTGGTTATTTAACTCCAAGGAGTCAAAGAGGAGGTAGATTTGGTCTTCATACTTTCCCTCGGACTCCATATTCTAGGAATATCTTTTCAAAGTCCAAGTCCAAGAGTGTATGTACAGTACGCAGACTGTATATGATTAACCACTCCTTTACATGTGAACAGCTAACTCAGTTGCAAGGAGACACCCAAAAGTTTGTGAATACACCATCACCGCTCTGGCAGCAGTCACGAACTCCAGCATATTCTCTGATGCCATCAAACAATGATCCATTAGACGAGGCAACTGGTTCCGTTGGACCAATTCGTAGGCTTCGGCATAAGGCATCTGCAGTTACTAATTCCAGACGATCTGCTTACTTTTATCCAAACCGACAACCAGAGATGAAGGTAGAAAACTCCAATACTTCGGAAGGCATTTTACCTGATATGAAGAAGAATCTGGAATTTGAAGGAGCAAGCACCATTCCTCTATCACAATCAGCAGTAAACAACAGCTCTGACTCAAGTCCTCTGATGGTCCGTCCACAGTCCAGTCAGGTTGCTAGGACAATCCTAGAGCATATTACTAGAAACCCACCTACTCCTAAAGAAAAGACGGAAGAGTTAAAGAGAGCAATTCAATGGAAGAAAACCTCATCTTCTAATGTACAAACGGTCAAGCCAAACGAAACCAGTAATTTGGCCGTAGAGTTAGATTCTCACCAAAAATCAAACCAAGTAGATCAGAACTGTAACCCCCAATCGAGTGAAAAGGGAAAAACCATGTCCATGATTCTTCCAAAGGAGAGTTCTGGCAGAAATTCTGATGCTGCAATCCAAAATCCTTTCGGTCCAAAGTTTAGACTTAGCAATGCTGAACCAAAACACAAGGATGATGCAGGCTTAAATGTTGGTAGCTCATTGCCTAAGGTTGTTCCAAAGACCGTTCCCGTTCCAGCTCTTGGATCCAAAATGGGGGCTCAAATGAAGCCTTCCCCTTCCCTTGGAGGCAAACCTGTTTTTACATCCATTACCATCAACAAGCCTGAGTCAAAATGGACATTTTCTTCCGATAGTGGTTCGGCGTTTACTTTCCCTGTTTCCGGAGCATCCTCAGGAATGCTATCAGAACCACCAACACCATCCATCTTCCCATCAACCAGCCTTGGGGGTAGTCAGCCTCTATTACTGAAGCCCGAGACTCCAATTCCTTCATACAGCTTTGGCTCAAAGAAGTCCAGCCGTACCCTTATTTTCTCATTCCCTTCAACAAACAGCGATAAAATCCTCACTGAAGCCTCAATTAAGTTCAGCTTCGGATCCAAGGATCATACAAGACTTTCCTTCAGTTCTGTTGGGAAAGATGCAGTTTGTTGCTAA
Protein sequence
MERAEEGTSSTPYAGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRLITGGATRLLPYLFSKPLPSNALPSPGNVDQDKVEAEVEDNVSGEEEPHNQRVPTLFGLPGPSGEANISENNFDFNGRKKDRENDALAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDTMTHYLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPKLHIAASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSILVPYGPYLYVQGMVKCQILVFYHQLVVAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQVEQPSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNRKSEPGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRGGRFGLHTFPRTPYSRNIFSKSKSKSVCTVRRLYMINHSFTCEQLTQLQGDTQKFVNTPSPLWQQSRTPAYSLMPSNNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMKVENSNTSEGILPDMKKNLEFEGASTIPLSQSAVNNSSDSSPLMVRPQSSQVARTILEHITRNPPTPKEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSEKGKTMSMILPKESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPVPALGSKMGAQMKPSPSLGGKPVFTSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEPPTPSIFPSTSLGGSQPLLLKPETPIPSYSFGSKKSSRTLIFSFPSTNSDKILTEASIKFSFGSKDHTRLSFSSVGKDAVCC
Homology
BLAST of CmUC06G119510 vs. NCBI nr
Match:
XP_038879645.1 (nuclear pore complex protein NUP1 isoform X2 [Benincasa hispida])
HSP 1 Score: 1153.7 bits (2983), Expect = 0.0e+00
Identity = 635/919 (69.10%), Postives = 667/919 (72.58%), Query Frame = 0
Query: 1 MERAEEGTSSTPYAGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRLIT 60
M+ AEEGTSS PY GGGVGGKVRKPT+RKPPPTPYARP+H+QSQRRWLSKLVDPAYRLIT
Sbjct: 1 MDSAEEGTSSAPYGGGGVGGKVRKPTTRKPPPTPYARPLHNQSQRRWLSKLVDPAYRLIT 60
Query: 61 GGATRLLPYLFSKPLPSNALPSPGNVDQDKVEAEVEDNVSGEEEPHNQRVPTLFGLPGPS 120
GATRLLPYLF KPLPSNALPSPG+VDQDKVEAEVEDNVSGEEEPHN V TL G PGPS
Sbjct: 61 DGATRLLPYLFLKPLPSNALPSPGDVDQDKVEAEVEDNVSGEEEPHNPEVSTLVGSPGPS 120
Query: 121 GEANISENNFDFNGRKKDRENDALAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDTMTH 180
GEAN SENN DFNG +KDR ND LAGNR FDVEKWIQEKTFS
Sbjct: 121 GEANRSENNSDFNGCQKDRVNDTLAGNRTFDVEKWIQEKTFS------------------ 180
Query: 181 YLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPKLHI 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 AASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSILVPYGPYLYVQGMVKCQILVFYHQLV 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 VAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQVEQ 360
RDEVS LLEILQSRALEPS+ + NTF P++IEKQVEQ
Sbjct: 301 ----------------------RDEVSNLLEILQSRALEPSSKVEDNTFPPRSIEKQVEQ 360
Query: 361 PSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNRKSE 420
PS ANRVLKM EGKQEDLERA GNLTPHPHSS KLSD+GASPVDIARAYMSNRK E
Sbjct: 361 PSAANRVLKMPCEGKQEDLERAMWGNLTPHPHSS---KLSDVGASPVDIARAYMSNRKYE 420
Query: 421 PGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRGGRF 480
PGLLS+KIPDDER LHGDHQ+SKP IPSMSPNPSTCWPGAMSESQRGYLTPR QRGGRF
Sbjct: 421 PGLLSDKIPDDERGLLHGDHQISKPCIPSMSPNPSTCWPGAMSESQRGYLTPRGQRGGRF 480
Query: 481 GLHTFPRTPYSRNIFSKSKSKSVCTVRRLYMINHSFTCEQLTQLQGDTQKFVNTPSPLWQ 540
GLH+FPRTPYSR+IFSKSKSK LT LQGD QKFVNTPSPLWQ
Sbjct: 481 GLHSFPRTPYSRSIFSKSKSK-------------------LTHLQGDAQKFVNTPSPLWQ 540
Query: 541 QSRTPAYSLMPSNNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMKVENSN 600
QSRTPA+SLM SNNDPLDE GS GPI RLRH ASAVTNSRRSAYFYPNRQPEMKVENSN
Sbjct: 541 QSRTPAHSLMTSNNDPLDETIGSTGPIHRLRHTASAVTNSRRSAYFYPNRQPEMKVENSN 600
Query: 601 TSEGILPDMKKNLEFEGASTIPLSQSAVNNSSDSSPLMVRPQSSQVARTILEHITRNPPT 660
TSEGILPDMKKNLE GAS IPLS+S VNNSS+SSPL VRPQSSQVARTILEHITRNPPT
Sbjct: 601 TSEGILPDMKKNLELGGASIIPLSKSVVNNSSESSPLTVRPQSSQVARTILEHITRNPPT 660
Query: 661 PKEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSEKGKT 720
PKEKTEELKRAI+WKKT SSNVQTVK NE SNL EL SHQKSN+VDQNC+PQ ++KG+T
Sbjct: 661 PKEKTEELKRAIEWKKTPSSNVQTVKSNEASNLTAELYSHQKSNKVDQNCHPQLTDKGET 720
Query: 721 MSMILPKESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPVPAL 780
MS ILPKES+GRN D AIQNP G KFRLSNAE K+KDDAGLN+GSS PKV PKTVPVPAL
Sbjct: 721 MSTILPKESAGRNYDGAIQNPSGLKFRLSNAESKYKDDAGLNIGSSSPKVAPKTVPVPAL 737
Query: 781 GSKMGAQMKPSPSLGGKPVFTSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEPPTP 840
GS++G Q+KPSPSLGGKPVF SITINKPESKW FSSDSGSAFTFPVSGASSGMLSEPPTP
Sbjct: 781 GSEVGTQIKPSPSLGGKPVFPSITINKPESKWAFSSDSGSAFTFPVSGASSGMLSEPPTP 737
Query: 841 SIFPSTSLGGSQPLLLKPETPIPSYSFGSKKSSRTLIFSFPSTNSDKILTEAS-IKFSFG 900
SIFPSTSLGGSQPLLLKPETP+PSYSFGSKKSSRTL+FSFPSTNSD I E S IKFSFG
Sbjct: 841 SIFPSTSLGGSQPLLLKPETPVPSYSFGSKKSSRTLVFSFPSTNSDTISNETSNIKFSFG 737
Query: 901 SKDHTRLSFSSVGKDAVCC 919
S DHTRL F SVGKDAVCC
Sbjct: 901 SNDHTRLHFGSVGKDAVCC 737
BLAST of CmUC06G119510 vs. NCBI nr
Match:
XP_038879644.1 (nuclear pore complex protein NUP1 isoform X1 [Benincasa hispida])
HSP 1 Score: 1134.0 bits (2932), Expect = 0.0e+00
Identity = 635/959 (66.21%), Postives = 667/959 (69.55%), Query Frame = 0
Query: 1 MERAEEGTSSTPYAGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRLIT 60
M+ AEEGTSS PY GGGVGGKVRKPT+RKPPPTPYARP+H+QSQRRWLSKLVDPAYRLIT
Sbjct: 1 MDSAEEGTSSAPYGGGGVGGKVRKPTTRKPPPTPYARPLHNQSQRRWLSKLVDPAYRLIT 60
Query: 61 GGATRLLPYLFSKPLPSNALPSPGNVDQDKVEAEVEDNVSGEEEPHNQRVPTLFGLPGPS 120
GATRLLPYLF KPLPSNALPSPG+VDQDKVEAEVEDNVSGEEEPHN V TL G PGPS
Sbjct: 61 DGATRLLPYLFLKPLPSNALPSPGDVDQDKVEAEVEDNVSGEEEPHNPEVSTLVGSPGPS 120
Query: 121 GEANISENNFDFNGRKKDRENDALAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDTMTH 180
GEAN SENN DFNG +KDR ND LAGNR FDVEKWIQEKTFS
Sbjct: 121 GEANRSENNSDFNGCQKDRVNDTLAGNRTFDVEKWIQEKTFS------------------ 180
Query: 181 YLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPKLHI 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 AASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSILVPYGPYLYVQGMVKCQILVFYHQLV 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 VAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQVEQ 360
RDEVS LLEILQSRALEPS+ + NTF P++IEKQVEQ
Sbjct: 301 ----------------------RDEVSNLLEILQSRALEPSSKVEDNTFPPRSIEKQVEQ 360
Query: 361 PSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNRKSE 420
PS ANRVLKM EGKQEDLERA GNLTPHPHSS KLSD+GASPVDIARAYMSNRK E
Sbjct: 361 PSAANRVLKMPCEGKQEDLERAMWGNLTPHPHSS---KLSDVGASPVDIARAYMSNRKYE 420
Query: 421 PGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRGGRF 480
PGLLS+KIPDDER LHGDHQ+SKP IPSMSPNPSTCWPGAMSESQRGYLTPR QRGGRF
Sbjct: 421 PGLLSDKIPDDERGLLHGDHQISKPCIPSMSPNPSTCWPGAMSESQRGYLTPRGQRGGRF 480
Query: 481 GLHTFPRTPYSRNIFSKSKSKSVCTVRRLYMINHSFTCEQLTQLQGDTQKFVNTPSPLWQ 540
GLH+FPRTPYSR+IFSKSKSK LT LQGD QKFVNTPSPLWQ
Sbjct: 481 GLHSFPRTPYSRSIFSKSKSK-------------------LTHLQGDAQKFVNTPSPLWQ 540
Query: 541 QSRTPAYS----------------------------------------LMPSNNDPLDEA 600
QSRTPA+S LM SNNDPLDE
Sbjct: 541 QSRTPAHSLEELKVLGHFVVLEYLILHKFLRQLSRLNIALLILGHYPLLMTSNNDPLDET 600
Query: 601 TGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMKVENSNTSEGILPDMKKNLEFEGAST 660
GS GPI RLRH ASAVTNSRRSAYFYPNRQPEMKVENSNTSEGILPDMKKNLE GAS
Sbjct: 601 IGSTGPIHRLRHTASAVTNSRRSAYFYPNRQPEMKVENSNTSEGILPDMKKNLELGGASI 660
Query: 661 IPLSQSAVNNSSDSSPLMVRPQSSQVARTILEHITRNPPTPKEKTEELKRAIQWKKTSSS 720
IPLS+S VNNSS+SSPL VRPQSSQVARTILEHITRNPPTPKEKTEELKRAI+WKKT SS
Sbjct: 661 IPLSKSVVNNSSESSPLTVRPQSSQVARTILEHITRNPPTPKEKTEELKRAIEWKKTPSS 720
Query: 721 NVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSEKGKTMSMILPKESSGRNSDAAIQN 780
NVQTVK NE SNL EL SHQKSN+VDQNC+PQ ++KG+TMS ILPKES+GRN D AIQN
Sbjct: 721 NVQTVKSNEASNLTAELYSHQKSNKVDQNCHPQLTDKGETMSTILPKESAGRNYDGAIQN 777
Query: 781 PFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPVPALGSKMGAQMKPSPSLGGKPVF 840
P G KFRLSNAE K+KDDAGLN+GSS PKV PKTVPVPALGS++G Q+KPSPSLGGKPVF
Sbjct: 781 PSGLKFRLSNAESKYKDDAGLNIGSSSPKVAPKTVPVPALGSEVGTQIKPSPSLGGKPVF 777
Query: 841 TSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEPPTPSIFPSTSLGGSQPLLLKPET 900
SITINKPESKW FSSDSGSAFTFPVSGASSGMLSEPPTPSIFPSTSLGGSQPLLLKPET
Sbjct: 841 PSITINKPESKWAFSSDSGSAFTFPVSGASSGMLSEPPTPSIFPSTSLGGSQPLLLKPET 777
Query: 901 PIPSYSFGSKKSSRTLIFSFPSTNSDKILTEAS-IKFSFGSKDHTRLSFSSVGKDAVCC 919
P+PSYSFGSKKSSRTL+FSFPSTNSD I E S IKFSFGS DHTRL F SVGKDAVCC
Sbjct: 901 PVPSYSFGSKKSSRTLVFSFPSTNSDTISNETSNIKFSFGSNDHTRLHFGSVGKDAVCC 777
BLAST of CmUC06G119510 vs. NCBI nr
Match:
XP_008443985.1 (PREDICTED: nuclear pore complex protein NUP1 isoform X3 [Cucumis melo])
HSP 1 Score: 1075.8 bits (2781), Expect = 0.0e+00
Identity = 605/923 (65.55%), Postives = 653/923 (70.75%), Query Frame = 0
Query: 1 MERAEEGTSSTPY--AGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRL 60
ME ++GTSSTPY GGGVGGKVRKPT+RKPPPTPYARP+H+QS RRWLSKLVDPAYRL
Sbjct: 1 METPDQGTSSTPYPGGGGGVGGKVRKPTTRKPPPTPYARPLHNQSDRRWLSKLVDPAYRL 60
Query: 61 ITGGATRLLPYLFSKPLPSNALPSPGNVDQDKVEAEVEDNVSGEEEPHNQRVPTLFGLPG 120
IT GATRLLP+LFSKPLPS ALPSPG+VDQDKVEA++EDNVSGEE P NQ TL GLPG
Sbjct: 61 ITDGATRLLPFLFSKPLPSTALPSPGDVDQDKVEADLEDNVSGEEPPRNQGQSTLVGLPG 120
Query: 121 PSGEANISENNFDFNGRKKDRENDALAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDTM 180
PSGEA S NN DF+G K REND LAGNRKFDVEKWIQEKTFS
Sbjct: 121 PSGEAIGSGNNSDFSGCLKGRENDILAGNRKFDVEKWIQEKTFS---------------- 180
Query: 181 THYLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPKL 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 HIAASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSILVPYGPYLYVQGMVKCQILVFYHQ 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 LVVAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQV 360
R+EVSRLLEILQSRALEPSN + G TFSPQ+IEKQV
Sbjct: 301 ------------------------REEVSRLLEILQSRALEPSNKVDGQTFSPQSIEKQV 360
Query: 361 EQPSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNRK 420
EQPS ANRVLK+ EGKQEDLER T GNLTPHPHS S+KL+D+GASPVDIARAYM+NRK
Sbjct: 361 EQPSAANRVLKIPHEGKQEDLERTTWGNLTPHPHS--SQKLTDVGASPVDIARAYMNNRK 420
Query: 421 SEPGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRGG 480
SEPGLLS+KIPD+ R +HGDHQMSKPFIPSMSP+PSTCWPGAMSESQRGYLTPRSQRGG
Sbjct: 421 SEPGLLSDKIPDEGRDLVHGDHQMSKPFIPSMSPSPSTCWPGAMSESQRGYLTPRSQRGG 480
Query: 481 RFGLHTFPRTPYSRNIFSKSKSKSVCTVRRLYMINHSFTCEQLTQLQGDTQKFVNTPSPL 540
RFGLH+FPRTPYSR+IFSK KSK LTQLQGD QKFV TP+PL
Sbjct: 481 RFGLHSFPRTPYSRSIFSKPKSK-------------------LTQLQGDDQKFVTTPTPL 540
Query: 541 WQQSRTPAYSLMPSNNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMKVEN 600
WQQSRTPAYS M S+ND LDEA GS GPIR+LRHKASAVTNSRRSAY YP RQP+MKV N
Sbjct: 541 WQQSRTPAYSQMISSNDLLDEANGSFGPIRKLRHKASAVTNSRRSAYLYPPRQPDMKVAN 600
Query: 601 SNTSEGILPDMKKNLEFEGASTIPLSQSAVNNSSDSSPLMVRPQSSQVARTILEHITRNP 660
SN SE ILPDMKKNLE GASTIPLSQS NN+S+S+ +RPQSSQVARTILEHITRN
Sbjct: 601 SNASESILPDMKKNLELGGASTIPLSQSVGNNTSESNLPTLRPQSSQVARTILEHITRNS 660
Query: 661 PTPKEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSEKG 720
PTPKEK EELKRAI+WKKT SSN+QTVKPNE NLAVELDSH+K+NQVDQ PQ S G
Sbjct: 661 PTPKEKKEELKRAIEWKKTPSSNLQTVKPNEARNLAVELDSHKKANQVDQISPPQLSNTG 720
Query: 721 KTMSMILPKESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPVP 780
TMS ILPKES+GRNSDAA Q P G KFR SNAEPKH+ DAGLN+G S PKVVPKTVPVP
Sbjct: 721 NTMSTILPKESAGRNSDAANQYPSGLKFRFSNAEPKHQGDAGLNIGRSSPKVVPKTVPVP 742
Query: 781 ALGSKMGAQMKPSPSLGGKPVFTSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEPP 840
A+G+ +G Q+ PS S GGKPVF SITINKPESKW FSSDSGSAFTFPVSGASSGMLSEPP
Sbjct: 781 AVGTAVGTQIMPSSSFGGKPVFPSITINKPESKWAFSSDSGSAFTFPVSGASSGMLSEPP 742
Query: 841 TPSIFPS--TSLGGSQPLLLKPETPIPSYSFGSKKSSRTLIFSFPSTNSDKILTEAS-IK 900
TPSIFPS TSLGGSQPLLLKPE P+PSYSFGSKKSS +L+FSFPSTN+D I TEAS IK
Sbjct: 841 TPSIFPSTTTSLGGSQPLLLKPEAPVPSYSFGSKKSSPSLVFSFPSTNNDTICTEASNIK 742
Query: 901 FSFGSKDHTRLSFSSVGKDAVCC 919
FSFGS D+TRLSFSSVGKDAVCC
Sbjct: 901 FSFGSNDNTRLSFSSVGKDAVCC 742
BLAST of CmUC06G119510 vs. NCBI nr
Match:
XP_008443983.1 (PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Cucumis melo])
HSP 1 Score: 1071.2 bits (2769), Expect = 4.9e-309
Identity = 605/924 (65.48%), Postives = 653/924 (70.67%), Query Frame = 0
Query: 1 MERAEEGTSSTPY--AGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRL 60
ME ++GTSSTPY GGGVGGKVRKPT+RKPPPTPYARP+H+QS RRWLSKLVDPAYRL
Sbjct: 1 METPDQGTSSTPYPGGGGGVGGKVRKPTTRKPPPTPYARPLHNQSDRRWLSKLVDPAYRL 60
Query: 61 ITGGATRLLPYLFSKPLPSNALPSPGNVDQ-DKVEAEVEDNVSGEEEPHNQRVPTLFGLP 120
IT GATRLLP+LFSKPLPS ALPSPG+VDQ DKVEA++EDNVSGEE P NQ TL GLP
Sbjct: 61 ITDGATRLLPFLFSKPLPSTALPSPGDVDQADKVEADLEDNVSGEEPPRNQGQSTLVGLP 120
Query: 121 GPSGEANISENNFDFNGRKKDRENDALAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDT 180
GPSGEA S NN DF+G K REND LAGNRKFDVEKWIQEKTFS
Sbjct: 121 GPSGEAIGSGNNSDFSGCLKGRENDILAGNRKFDVEKWIQEKTFS--------------- 180
Query: 181 MTHYLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPK 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 LHIAASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSILVPYGPYLYVQGMVKCQILVFYH 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 QLVVAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQ 360
R+EVSRLLEILQSRALEPSN + G TFSPQ+IEKQ
Sbjct: 301 -------------------------REEVSRLLEILQSRALEPSNKVDGQTFSPQSIEKQ 360
Query: 361 VEQPSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNR 420
VEQPS ANRVLK+ EGKQEDLER T GNLTPHPHS S+KL+D+GASPVDIARAYM+NR
Sbjct: 361 VEQPSAANRVLKIPHEGKQEDLERTTWGNLTPHPHS--SQKLTDVGASPVDIARAYMNNR 420
Query: 421 KSEPGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRG 480
KSEPGLLS+KIPD+ R +HGDHQMSKPFIPSMSP+PSTCWPGAMSESQRGYLTPRSQRG
Sbjct: 421 KSEPGLLSDKIPDEGRDLVHGDHQMSKPFIPSMSPSPSTCWPGAMSESQRGYLTPRSQRG 480
Query: 481 GRFGLHTFPRTPYSRNIFSKSKSKSVCTVRRLYMINHSFTCEQLTQLQGDTQKFVNTPSP 540
GRFGLH+FPRTPYSR+IFSK KSK LTQLQGD QKFV TP+P
Sbjct: 481 GRFGLHSFPRTPYSRSIFSKPKSK-------------------LTQLQGDDQKFVTTPTP 540
Query: 541 LWQQSRTPAYSLMPSNNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMKVE 600
LWQQSRTPAYS M S+ND LDEA GS GPIR+LRHKASAVTNSRRSAY YP RQP+MKV
Sbjct: 541 LWQQSRTPAYSQMISSNDLLDEANGSFGPIRKLRHKASAVTNSRRSAYLYPPRQPDMKVA 600
Query: 601 NSNTSEGILPDMKKNLEFEGASTIPLSQSAVNNSSDSSPLMVRPQSSQVARTILEHITRN 660
NSN SE ILPDMKKNLE GASTIPLSQS NN+S+S+ +RPQSSQVARTILEHITRN
Sbjct: 601 NSNASESILPDMKKNLELGGASTIPLSQSVGNNTSESNLPTLRPQSSQVARTILEHITRN 660
Query: 661 PPTPKEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSEK 720
PTPKEK EELKRAI+WKKT SSN+QTVKPNE NLAVELDSH+K+NQVDQ PQ S
Sbjct: 661 SPTPKEKKEELKRAIEWKKTPSSNLQTVKPNEARNLAVELDSHKKANQVDQISPPQLSNT 720
Query: 721 GKTMSMILPKESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPV 780
G TMS ILPKES+GRNSDAA Q P G KFR SNAEPKH+ DAGLN+G S PKVVPKTVPV
Sbjct: 721 GNTMSTILPKESAGRNSDAANQYPSGLKFRFSNAEPKHQGDAGLNIGRSSPKVVPKTVPV 743
Query: 781 PALGSKMGAQMKPSPSLGGKPVFTSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEP 840
PA+G+ +G Q+ PS S GGKPVF SITINKPESKW FSSDSGSAFTFPVSGASSGMLSEP
Sbjct: 781 PAVGTAVGTQIMPSSSFGGKPVFPSITINKPESKWAFSSDSGSAFTFPVSGASSGMLSEP 743
Query: 841 PTPSIFPS--TSLGGSQPLLLKPETPIPSYSFGSKKSSRTLIFSFPSTNSDKILTEAS-I 900
PTPSIFPS TSLGGSQPLLLKPE P+PSYSFGSKKSS +L+FSFPSTN+D I TEAS I
Sbjct: 841 PTPSIFPSTTTSLGGSQPLLLKPEAPVPSYSFGSKKSSPSLVFSFPSTNNDTICTEASNI 743
Query: 901 KFSFGSKDHTRLSFSSVGKDAVCC 919
KFSFGS D+TRLSFSSVGKDAVCC
Sbjct: 901 KFSFGSNDNTRLSFSSVGKDAVCC 743
BLAST of CmUC06G119510 vs. NCBI nr
Match:
XP_008443984.1 (PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Cucumis melo])
HSP 1 Score: 1070.5 bits (2767), Expect = 8.5e-309
Identity = 605/924 (65.48%), Postives = 652/924 (70.56%), Query Frame = 0
Query: 1 MERAEEGTSSTPY--AGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRL 60
ME ++GTSSTPY GGGVGGKVRKPT+RKPPPTPYARP+H+QS RRWLSKLVDPAYRL
Sbjct: 1 METPDQGTSSTPYPGGGGGVGGKVRKPTTRKPPPTPYARPLHNQSDRRWLSKLVDPAYRL 60
Query: 61 ITGGATRLLPYLFSKPLPSNALPSPGNVDQ-DKVEAEVEDNVSGEEEPHNQRVPTLFGLP 120
IT GATRLLP+LFSKPLPS ALPSPG+VDQ DKVEA++EDNVSGEE P NQ TL GLP
Sbjct: 61 ITDGATRLLPFLFSKPLPSTALPSPGDVDQADKVEADLEDNVSGEEPPRNQGQSTLVGLP 120
Query: 121 GPSGEANISENNFDFNGRKKDRENDALAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDT 180
GPSGEA S NN DF+G K REND LAGNRKFDVEKWIQEKTFS
Sbjct: 121 GPSGEAIGSGNNSDFSGCLKGRENDILAGNRKFDVEKWIQEKTFS--------------- 180
Query: 181 MTHYLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPK 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 LHIAASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSILVPYGPYLYVQGMVKCQILVFYH 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 QLVVAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQ 360
R+EVSRLLEILQSRALEPSN + G TFSPQ+IEKQ
Sbjct: 301 -------------------------REEVSRLLEILQSRALEPSNKVDGQTFSPQSIEKQ 360
Query: 361 VEQPSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNR 420
VEQPS ANRVLK+ EGKQEDLER T GNLTPHPHSS KL+D+GASPVDIARAYM+NR
Sbjct: 361 VEQPSAANRVLKIPHEGKQEDLERTTWGNLTPHPHSS---KLTDVGASPVDIARAYMNNR 420
Query: 421 KSEPGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRG 480
KSEPGLLS+KIPD+ R +HGDHQMSKPFIPSMSP+PSTCWPGAMSESQRGYLTPRSQRG
Sbjct: 421 KSEPGLLSDKIPDEGRDLVHGDHQMSKPFIPSMSPSPSTCWPGAMSESQRGYLTPRSQRG 480
Query: 481 GRFGLHTFPRTPYSRNIFSKSKSKSVCTVRRLYMINHSFTCEQLTQLQGDTQKFVNTPSP 540
GRFGLH+FPRTPYSR+IFSK KSK LTQLQGD QKFV TP+P
Sbjct: 481 GRFGLHSFPRTPYSRSIFSKPKSK-------------------LTQLQGDDQKFVTTPTP 540
Query: 541 LWQQSRTPAYSLMPSNNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMKVE 600
LWQQSRTPAYS M S+ND LDEA GS GPIR+LRHKASAVTNSRRSAY YP RQP+MKV
Sbjct: 541 LWQQSRTPAYSQMISSNDLLDEANGSFGPIRKLRHKASAVTNSRRSAYLYPPRQPDMKVA 600
Query: 601 NSNTSEGILPDMKKNLEFEGASTIPLSQSAVNNSSDSSPLMVRPQSSQVARTILEHITRN 660
NSN SE ILPDMKKNLE GASTIPLSQS NN+S+S+ +RPQSSQVARTILEHITRN
Sbjct: 601 NSNASESILPDMKKNLELGGASTIPLSQSVGNNTSESNLPTLRPQSSQVARTILEHITRN 660
Query: 661 PPTPKEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSEK 720
PTPKEK EELKRAI+WKKT SSN+QTVKPNE NLAVELDSH+K+NQVDQ PQ S
Sbjct: 661 SPTPKEKKEELKRAIEWKKTPSSNLQTVKPNEARNLAVELDSHKKANQVDQISPPQLSNT 720
Query: 721 GKTMSMILPKESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPV 780
G TMS ILPKES+GRNSDAA Q P G KFR SNAEPKH+ DAGLN+G S PKVVPKTVPV
Sbjct: 721 GNTMSTILPKESAGRNSDAANQYPSGLKFRFSNAEPKHQGDAGLNIGRSSPKVVPKTVPV 742
Query: 781 PALGSKMGAQMKPSPSLGGKPVFTSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEP 840
PA+G+ +G Q+ PS S GGKPVF SITINKPESKW FSSDSGSAFTFPVSGASSGMLSEP
Sbjct: 781 PAVGTAVGTQIMPSSSFGGKPVFPSITINKPESKWAFSSDSGSAFTFPVSGASSGMLSEP 742
Query: 841 PTPSIFPS--TSLGGSQPLLLKPETPIPSYSFGSKKSSRTLIFSFPSTNSDKILTEAS-I 900
PTPSIFPS TSLGGSQPLLLKPE P+PSYSFGSKKSS +L+FSFPSTN+D I TEAS I
Sbjct: 841 PTPSIFPSTTTSLGGSQPLLLKPEAPVPSYSFGSKKSSPSLVFSFPSTNNDTICTEASNI 742
Query: 901 KFSFGSKDHTRLSFSSVGKDAVCC 919
KFSFGS D+TRLSFSSVGKDAVCC
Sbjct: 901 KFSFGSNDNTRLSFSSVGKDAVCC 742
BLAST of CmUC06G119510 vs. ExPASy Swiss-Prot
Match:
Q9CAF4 (Nuclear pore complex protein NUP1 OS=Arabidopsis thaliana OX=3702 GN=NUP1 PE=1 SV=1)
HSP 1 Score: 66.2 bits (160), Expect = 2.1e-09
Identity = 67/197 (34.01%), Postives = 83/197 (42.13%), Query Frame = 0
Query: 1 MERAEEGTSSTPYAGG-GVGGKVRKPTSRKPPPTPYARPV----------HDQSQRRWLS 60
M A G SS PY GG G GGK RKPT+R+ TPY RP D WLS
Sbjct: 1 MASAARGESSNPYGGGLGTGGKFRKPTARRSQKTPYDRPTTSVRNAGLGGGDVRGGGWLS 60
Query: 61 KLVDPAYRLITGGATRLLPYLFSKPLPSNALPSPGNVDQDKVE---AEVEDNVSGEEEPH 120
KLVDPA RLIT A RL L K L S P Q ++ E V +E+
Sbjct: 61 KLVDPAQRLITYSAQRLFGSLSRKRLGSGETPLQSPEQQKQLPERGVNQETKVGHKEDVS 120
Query: 121 NQRVPTLFGLPGPSGEANISENNFDFNGRKKDRENDALAGNRKFDVEKWIQEKTFSRNMN 180
N L +G + + N D D D+EK +Q KTF+R+
Sbjct: 121 N--------LSMKNGLIRMEDTN-----ASVDPPKDGFT-----DLEKILQGKTFTRS-- 170
Query: 181 MATIHDIDIDTMTHYLR 184
++D +T LR
Sbjct: 181 -------EVDRLTTLLR 170
BLAST of CmUC06G119510 vs. ExPASy TrEMBL
Match:
A0A1S3B9A7 (nuclear pore complex protein NUP1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103487440 PE=4 SV=1)
HSP 1 Score: 1075.8 bits (2781), Expect = 0.0e+00
Identity = 605/923 (65.55%), Postives = 653/923 (70.75%), Query Frame = 0
Query: 1 MERAEEGTSSTPY--AGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRL 60
ME ++GTSSTPY GGGVGGKVRKPT+RKPPPTPYARP+H+QS RRWLSKLVDPAYRL
Sbjct: 1 METPDQGTSSTPYPGGGGGVGGKVRKPTTRKPPPTPYARPLHNQSDRRWLSKLVDPAYRL 60
Query: 61 ITGGATRLLPYLFSKPLPSNALPSPGNVDQDKVEAEVEDNVSGEEEPHNQRVPTLFGLPG 120
IT GATRLLP+LFSKPLPS ALPSPG+VDQDKVEA++EDNVSGEE P NQ TL GLPG
Sbjct: 61 ITDGATRLLPFLFSKPLPSTALPSPGDVDQDKVEADLEDNVSGEEPPRNQGQSTLVGLPG 120
Query: 121 PSGEANISENNFDFNGRKKDRENDALAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDTM 180
PSGEA S NN DF+G K REND LAGNRKFDVEKWIQEKTFS
Sbjct: 121 PSGEAIGSGNNSDFSGCLKGRENDILAGNRKFDVEKWIQEKTFS---------------- 180
Query: 181 THYLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPKL 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 HIAASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSILVPYGPYLYVQGMVKCQILVFYHQ 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 LVVAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQV 360
R+EVSRLLEILQSRALEPSN + G TFSPQ+IEKQV
Sbjct: 301 ------------------------REEVSRLLEILQSRALEPSNKVDGQTFSPQSIEKQV 360
Query: 361 EQPSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNRK 420
EQPS ANRVLK+ EGKQEDLER T GNLTPHPHS S+KL+D+GASPVDIARAYM+NRK
Sbjct: 361 EQPSAANRVLKIPHEGKQEDLERTTWGNLTPHPHS--SQKLTDVGASPVDIARAYMNNRK 420
Query: 421 SEPGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRGG 480
SEPGLLS+KIPD+ R +HGDHQMSKPFIPSMSP+PSTCWPGAMSESQRGYLTPRSQRGG
Sbjct: 421 SEPGLLSDKIPDEGRDLVHGDHQMSKPFIPSMSPSPSTCWPGAMSESQRGYLTPRSQRGG 480
Query: 481 RFGLHTFPRTPYSRNIFSKSKSKSVCTVRRLYMINHSFTCEQLTQLQGDTQKFVNTPSPL 540
RFGLH+FPRTPYSR+IFSK KSK LTQLQGD QKFV TP+PL
Sbjct: 481 RFGLHSFPRTPYSRSIFSKPKSK-------------------LTQLQGDDQKFVTTPTPL 540
Query: 541 WQQSRTPAYSLMPSNNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMKVEN 600
WQQSRTPAYS M S+ND LDEA GS GPIR+LRHKASAVTNSRRSAY YP RQP+MKV N
Sbjct: 541 WQQSRTPAYSQMISSNDLLDEANGSFGPIRKLRHKASAVTNSRRSAYLYPPRQPDMKVAN 600
Query: 601 SNTSEGILPDMKKNLEFEGASTIPLSQSAVNNSSDSSPLMVRPQSSQVARTILEHITRNP 660
SN SE ILPDMKKNLE GASTIPLSQS NN+S+S+ +RPQSSQVARTILEHITRN
Sbjct: 601 SNASESILPDMKKNLELGGASTIPLSQSVGNNTSESNLPTLRPQSSQVARTILEHITRNS 660
Query: 661 PTPKEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSEKG 720
PTPKEK EELKRAI+WKKT SSN+QTVKPNE NLAVELDSH+K+NQVDQ PQ S G
Sbjct: 661 PTPKEKKEELKRAIEWKKTPSSNLQTVKPNEARNLAVELDSHKKANQVDQISPPQLSNTG 720
Query: 721 KTMSMILPKESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPVP 780
TMS ILPKES+GRNSDAA Q P G KFR SNAEPKH+ DAGLN+G S PKVVPKTVPVP
Sbjct: 721 NTMSTILPKESAGRNSDAANQYPSGLKFRFSNAEPKHQGDAGLNIGRSSPKVVPKTVPVP 742
Query: 781 ALGSKMGAQMKPSPSLGGKPVFTSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEPP 840
A+G+ +G Q+ PS S GGKPVF SITINKPESKW FSSDSGSAFTFPVSGASSGMLSEPP
Sbjct: 781 AVGTAVGTQIMPSSSFGGKPVFPSITINKPESKWAFSSDSGSAFTFPVSGASSGMLSEPP 742
Query: 841 TPSIFPS--TSLGGSQPLLLKPETPIPSYSFGSKKSSRTLIFSFPSTNSDKILTEAS-IK 900
TPSIFPS TSLGGSQPLLLKPE P+PSYSFGSKKSS +L+FSFPSTN+D I TEAS IK
Sbjct: 841 TPSIFPSTTTSLGGSQPLLLKPEAPVPSYSFGSKKSSPSLVFSFPSTNNDTICTEASNIK 742
Query: 901 FSFGSKDHTRLSFSSVGKDAVCC 919
FSFGS D+TRLSFSSVGKDAVCC
Sbjct: 901 FSFGSNDNTRLSFSSVGKDAVCC 742
BLAST of CmUC06G119510 vs. ExPASy TrEMBL
Match:
A0A1S3BA46 (nuclear pore complex protein NUP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487440 PE=4 SV=1)
HSP 1 Score: 1071.2 bits (2769), Expect = 2.4e-309
Identity = 605/924 (65.48%), Postives = 653/924 (70.67%), Query Frame = 0
Query: 1 MERAEEGTSSTPY--AGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRL 60
ME ++GTSSTPY GGGVGGKVRKPT+RKPPPTPYARP+H+QS RRWLSKLVDPAYRL
Sbjct: 1 METPDQGTSSTPYPGGGGGVGGKVRKPTTRKPPPTPYARPLHNQSDRRWLSKLVDPAYRL 60
Query: 61 ITGGATRLLPYLFSKPLPSNALPSPGNVDQ-DKVEAEVEDNVSGEEEPHNQRVPTLFGLP 120
IT GATRLLP+LFSKPLPS ALPSPG+VDQ DKVEA++EDNVSGEE P NQ TL GLP
Sbjct: 61 ITDGATRLLPFLFSKPLPSTALPSPGDVDQADKVEADLEDNVSGEEPPRNQGQSTLVGLP 120
Query: 121 GPSGEANISENNFDFNGRKKDRENDALAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDT 180
GPSGEA S NN DF+G K REND LAGNRKFDVEKWIQEKTFS
Sbjct: 121 GPSGEAIGSGNNSDFSGCLKGRENDILAGNRKFDVEKWIQEKTFS--------------- 180
Query: 181 MTHYLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPK 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 LHIAASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSILVPYGPYLYVQGMVKCQILVFYH 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 QLVVAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQ 360
R+EVSRLLEILQSRALEPSN + G TFSPQ+IEKQ
Sbjct: 301 -------------------------REEVSRLLEILQSRALEPSNKVDGQTFSPQSIEKQ 360
Query: 361 VEQPSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNR 420
VEQPS ANRVLK+ EGKQEDLER T GNLTPHPHS S+KL+D+GASPVDIARAYM+NR
Sbjct: 361 VEQPSAANRVLKIPHEGKQEDLERTTWGNLTPHPHS--SQKLTDVGASPVDIARAYMNNR 420
Query: 421 KSEPGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRG 480
KSEPGLLS+KIPD+ R +HGDHQMSKPFIPSMSP+PSTCWPGAMSESQRGYLTPRSQRG
Sbjct: 421 KSEPGLLSDKIPDEGRDLVHGDHQMSKPFIPSMSPSPSTCWPGAMSESQRGYLTPRSQRG 480
Query: 481 GRFGLHTFPRTPYSRNIFSKSKSKSVCTVRRLYMINHSFTCEQLTQLQGDTQKFVNTPSP 540
GRFGLH+FPRTPYSR+IFSK KSK LTQLQGD QKFV TP+P
Sbjct: 481 GRFGLHSFPRTPYSRSIFSKPKSK-------------------LTQLQGDDQKFVTTPTP 540
Query: 541 LWQQSRTPAYSLMPSNNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMKVE 600
LWQQSRTPAYS M S+ND LDEA GS GPIR+LRHKASAVTNSRRSAY YP RQP+MKV
Sbjct: 541 LWQQSRTPAYSQMISSNDLLDEANGSFGPIRKLRHKASAVTNSRRSAYLYPPRQPDMKVA 600
Query: 601 NSNTSEGILPDMKKNLEFEGASTIPLSQSAVNNSSDSSPLMVRPQSSQVARTILEHITRN 660
NSN SE ILPDMKKNLE GASTIPLSQS NN+S+S+ +RPQSSQVARTILEHITRN
Sbjct: 601 NSNASESILPDMKKNLELGGASTIPLSQSVGNNTSESNLPTLRPQSSQVARTILEHITRN 660
Query: 661 PPTPKEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSEK 720
PTPKEK EELKRAI+WKKT SSN+QTVKPNE NLAVELDSH+K+NQVDQ PQ S
Sbjct: 661 SPTPKEKKEELKRAIEWKKTPSSNLQTVKPNEARNLAVELDSHKKANQVDQISPPQLSNT 720
Query: 721 GKTMSMILPKESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPV 780
G TMS ILPKES+GRNSDAA Q P G KFR SNAEPKH+ DAGLN+G S PKVVPKTVPV
Sbjct: 721 GNTMSTILPKESAGRNSDAANQYPSGLKFRFSNAEPKHQGDAGLNIGRSSPKVVPKTVPV 743
Query: 781 PALGSKMGAQMKPSPSLGGKPVFTSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEP 840
PA+G+ +G Q+ PS S GGKPVF SITINKPESKW FSSDSGSAFTFPVSGASSGMLSEP
Sbjct: 781 PAVGTAVGTQIMPSSSFGGKPVFPSITINKPESKWAFSSDSGSAFTFPVSGASSGMLSEP 743
Query: 841 PTPSIFPS--TSLGGSQPLLLKPETPIPSYSFGSKKSSRTLIFSFPSTNSDKILTEAS-I 900
PTPSIFPS TSLGGSQPLLLKPE P+PSYSFGSKKSS +L+FSFPSTN+D I TEAS I
Sbjct: 841 PTPSIFPSTTTSLGGSQPLLLKPEAPVPSYSFGSKKSSPSLVFSFPSTNNDTICTEASNI 743
Query: 901 KFSFGSKDHTRLSFSSVGKDAVCC 919
KFSFGS D+TRLSFSSVGKDAVCC
Sbjct: 901 KFSFGSNDNTRLSFSSVGKDAVCC 743
BLAST of CmUC06G119510 vs. ExPASy TrEMBL
Match:
A0A1S3B8V2 (nuclear pore complex protein NUP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487440 PE=4 SV=1)
HSP 1 Score: 1070.5 bits (2767), Expect = 4.1e-309
Identity = 605/924 (65.48%), Postives = 652/924 (70.56%), Query Frame = 0
Query: 1 MERAEEGTSSTPY--AGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRL 60
ME ++GTSSTPY GGGVGGKVRKPT+RKPPPTPYARP+H+QS RRWLSKLVDPAYRL
Sbjct: 1 METPDQGTSSTPYPGGGGGVGGKVRKPTTRKPPPTPYARPLHNQSDRRWLSKLVDPAYRL 60
Query: 61 ITGGATRLLPYLFSKPLPSNALPSPGNVDQ-DKVEAEVEDNVSGEEEPHNQRVPTLFGLP 120
IT GATRLLP+LFSKPLPS ALPSPG+VDQ DKVEA++EDNVSGEE P NQ TL GLP
Sbjct: 61 ITDGATRLLPFLFSKPLPSTALPSPGDVDQADKVEADLEDNVSGEEPPRNQGQSTLVGLP 120
Query: 121 GPSGEANISENNFDFNGRKKDRENDALAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDT 180
GPSGEA S NN DF+G K REND LAGNRKFDVEKWIQEKTFS
Sbjct: 121 GPSGEAIGSGNNSDFSGCLKGRENDILAGNRKFDVEKWIQEKTFS--------------- 180
Query: 181 MTHYLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPK 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 LHIAASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSILVPYGPYLYVQGMVKCQILVFYH 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 QLVVAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQ 360
R+EVSRLLEILQSRALEPSN + G TFSPQ+IEKQ
Sbjct: 301 -------------------------REEVSRLLEILQSRALEPSNKVDGQTFSPQSIEKQ 360
Query: 361 VEQPSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNR 420
VEQPS ANRVLK+ EGKQEDLER T GNLTPHPHSS KL+D+GASPVDIARAYM+NR
Sbjct: 361 VEQPSAANRVLKIPHEGKQEDLERTTWGNLTPHPHSS---KLTDVGASPVDIARAYMNNR 420
Query: 421 KSEPGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRG 480
KSEPGLLS+KIPD+ R +HGDHQMSKPFIPSMSP+PSTCWPGAMSESQRGYLTPRSQRG
Sbjct: 421 KSEPGLLSDKIPDEGRDLVHGDHQMSKPFIPSMSPSPSTCWPGAMSESQRGYLTPRSQRG 480
Query: 481 GRFGLHTFPRTPYSRNIFSKSKSKSVCTVRRLYMINHSFTCEQLTQLQGDTQKFVNTPSP 540
GRFGLH+FPRTPYSR+IFSK KSK LTQLQGD QKFV TP+P
Sbjct: 481 GRFGLHSFPRTPYSRSIFSKPKSK-------------------LTQLQGDDQKFVTTPTP 540
Query: 541 LWQQSRTPAYSLMPSNNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMKVE 600
LWQQSRTPAYS M S+ND LDEA GS GPIR+LRHKASAVTNSRRSAY YP RQP+MKV
Sbjct: 541 LWQQSRTPAYSQMISSNDLLDEANGSFGPIRKLRHKASAVTNSRRSAYLYPPRQPDMKVA 600
Query: 601 NSNTSEGILPDMKKNLEFEGASTIPLSQSAVNNSSDSSPLMVRPQSSQVARTILEHITRN 660
NSN SE ILPDMKKNLE GASTIPLSQS NN+S+S+ +RPQSSQVARTILEHITRN
Sbjct: 601 NSNASESILPDMKKNLELGGASTIPLSQSVGNNTSESNLPTLRPQSSQVARTILEHITRN 660
Query: 661 PPTPKEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSEK 720
PTPKEK EELKRAI+WKKT SSN+QTVKPNE NLAVELDSH+K+NQVDQ PQ S
Sbjct: 661 SPTPKEKKEELKRAIEWKKTPSSNLQTVKPNEARNLAVELDSHKKANQVDQISPPQLSNT 720
Query: 721 GKTMSMILPKESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPV 780
G TMS ILPKES+GRNSDAA Q P G KFR SNAEPKH+ DAGLN+G S PKVVPKTVPV
Sbjct: 721 GNTMSTILPKESAGRNSDAANQYPSGLKFRFSNAEPKHQGDAGLNIGRSSPKVVPKTVPV 742
Query: 781 PALGSKMGAQMKPSPSLGGKPVFTSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEP 840
PA+G+ +G Q+ PS S GGKPVF SITINKPESKW FSSDSGSAFTFPVSGASSGMLSEP
Sbjct: 781 PAVGTAVGTQIMPSSSFGGKPVFPSITINKPESKWAFSSDSGSAFTFPVSGASSGMLSEP 742
Query: 841 PTPSIFPS--TSLGGSQPLLLKPETPIPSYSFGSKKSSRTLIFSFPSTNSDKILTEAS-I 900
PTPSIFPS TSLGGSQPLLLKPE P+PSYSFGSKKSS +L+FSFPSTN+D I TEAS I
Sbjct: 841 PTPSIFPSTTTSLGGSQPLLLKPEAPVPSYSFGSKKSSPSLVFSFPSTNNDTICTEASNI 742
Query: 901 KFSFGSKDHTRLSFSSVGKDAVCC 919
KFSFGS D+TRLSFSSVGKDAVCC
Sbjct: 901 KFSFGSNDNTRLSFSSVGKDAVCC 742
BLAST of CmUC06G119510 vs. ExPASy TrEMBL
Match:
A0A5A7U707 (Nuclear pore complex protein NUP1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001900 PE=4 SV=1)
HSP 1 Score: 1057.7 bits (2734), Expect = 2.7e-305
Identity = 600/922 (65.08%), Postives = 647/922 (70.17%), Query Frame = 0
Query: 1 MERAEEGTSSTPY--AGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRL 60
ME ++GTSSTPY GGGVGGKVRKPT+RKPPPTPYARP+H+QS RRWLSKLVDPAYRL
Sbjct: 1 METPDQGTSSTPYPGGGGGVGGKVRKPTTRKPPPTPYARPLHNQSDRRWLSKLVDPAYRL 60
Query: 61 ITGGATRLLPYLFSKPLPSNALPSPGNVDQ-DKVEAEVEDNVSGEEEPHNQRVPTLFGLP 120
IT GATRLLPYLFSKPLPS ALPSPG+VDQ DKVEA++EDNVSGEE P NQ TL GLP
Sbjct: 61 ITDGATRLLPYLFSKPLPSTALPSPGDVDQADKVEADLEDNVSGEEPPRNQGQSTLVGLP 120
Query: 121 GPSGEANISENNFDFNGRKKDRENDALAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDT 180
GPSGEA S NN DF+G K REND LAGNRKFDVEKWIQEKTFS
Sbjct: 121 GPSGEAIGSGNNSDFSGCLKGRENDILAGNRKFDVEKWIQEKTFS--------------- 180
Query: 181 MTHYLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPK 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 LHIAASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSILVPYGPYLYVQGMVKCQILVFYH 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 QLVVAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQ 360
R+EVSRLLEILQSRALEPSN + G TFSPQ+IEKQ
Sbjct: 301 -------------------------REEVSRLLEILQSRALEPSNKVDGQTFSPQSIEKQ 360
Query: 361 VEQPSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNR 420
VEQPS ANRVLKM EGKQEDLER T GNLTPHPHSS KL+D+GASPVDIARAYM+NR
Sbjct: 361 VEQPSAANRVLKMPHEGKQEDLERTTWGNLTPHPHSS---KLTDVGASPVDIARAYMNNR 420
Query: 421 KSEPGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRG 480
KSEPGLLS+KIPD+ R +HGDHQMSKPFIPSMSP+PSTCWPGAMSESQRGYLTPRSQRG
Sbjct: 421 KSEPGLLSDKIPDEGRDLVHGDHQMSKPFIPSMSPSPSTCWPGAMSESQRGYLTPRSQRG 480
Query: 481 GRFGLHTFPRTPYSRNIFSKSKSKSVCTVRRLYMINHSFTCEQLTQLQGDTQKFVNTPSP 540
GRFGLH+FPRTPYSR+IFSK KSK LTQLQGD QKFV TP+P
Sbjct: 481 GRFGLHSFPRTPYSRSIFSKPKSK-------------------LTQLQGDDQKFVTTPTP 540
Query: 541 LWQQSRTPAYSLMPSNNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMKVE 600
LWQQSRTPAYS + ND LDEA GS GPIR+LRHKASAVTNSRRSAY YP RQP+MKV
Sbjct: 541 LWQQSRTPAYSQLLLFNDLLDEANGSFGPIRKLRHKASAVTNSRRSAYLYPPRQPDMKVA 600
Query: 601 NSNTSEGILPDMKKNLEFEGASTIPLSQSAVNNSSDSSPLMVRPQSSQVARTILEHITRN 660
NSN SE ILPDMKKNLE GASTIPLSQS NN+S+S+ +RPQSSQVARTILEHITRN
Sbjct: 601 NSNASESILPDMKKNLELGGASTIPLSQSVGNNTSESNLPTLRPQSSQVARTILEHITRN 660
Query: 661 PPTPKEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSEK 720
PTPKEK EELKRAI+WKKT SSN+QTV+PNE NLAVELDSH+K+NQVDQ PQ S
Sbjct: 661 SPTPKEKKEELKRAIEWKKTPSSNLQTVEPNEARNLAVELDSHKKANQVDQISPPQLSNT 720
Query: 721 GKTMSMILPKESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPV 780
G TMS ILPKES+GRNSDAA Q P G KFR S AEPKH+ DAGLN+G S PKVVPKTVPV
Sbjct: 721 GNTMSTILPKESAGRNSDAANQYPSGLKFRFSKAEPKHQGDAGLNIGRSSPKVVPKTVPV 740
Query: 781 PALGSKMGAQMKPSPSLGGKPVFTSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEP 840
PA+G+ +G Q+ PS S GGKPVF SITINKPESKW FSSDSGSAFTFPVSGASSGMLSEP
Sbjct: 781 PAVGTAVGTQIMPSSSFGGKPVFPSITINKPESKWAFSSDSGSAFTFPVSGASSGMLSEP 740
Query: 841 PTPSIFPS--TSLGGSQPLLLKPETPIPSYSFGSKKSSRTLIFSFPSTNSDKILTEAS-I 900
PTPSIFPS TSLGGSQPLLLKPE P+PSYSFGSKKSS +L+FSFPSTN+D I TEAS I
Sbjct: 841 PTPSIFPSTTTSLGGSQPLLLKPEAPVPSYSFGSKKSSPSLVFSFPSTNNDTICTEASNI 740
Query: 901 KFSFGSKDHTRLSFSSVGKDAV 917
KFSFGS D+TRLSFSSVGKDA+
Sbjct: 901 KFSFGSNDNTRLSFSSVGKDAI 740
BLAST of CmUC06G119510 vs. ExPASy TrEMBL
Match:
A0A6J1HA42 (nuclear pore complex protein NUP1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461519 PE=4 SV=1)
HSP 1 Score: 1056.2 bits (2730), Expect = 7.8e-305
Identity = 594/919 (64.64%), Postives = 650/919 (70.73%), Query Frame = 0
Query: 1 MERAEEGTSSTPYAGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRLIT 60
MERAE GTSSTPY GGG+GGKVRKP SRKP P+PYARPVH+QS RRWLSKLVDPAYRLIT
Sbjct: 1 MERAEGGTSSTPYGGGGIGGKVRKPNSRKPLPSPYARPVHNQSHRRWLSKLVDPAYRLIT 60
Query: 61 GGATRLLPYLFSKPLPSNALPSPGNVDQDKVEAEVEDNVSGEEEPHNQRVPTLFGLPGPS 120
GGATRLLPYLF KPLPSNALPSPG+ DQDKVEAEVEDNVSG EEP N V TL GLPG S
Sbjct: 61 GGATRLLPYLFPKPLPSNALPSPGDEDQDKVEAEVEDNVSG-EEPQNLGVSTLVGLPGSS 120
Query: 121 GEANISENNFDFNGRKKDRENDALAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDTMTH 180
GEAN SENN DFNG +KD+EN+AL GN K DVEKWIQ KTFS
Sbjct: 121 GEANRSENNSDFNGCQKDKENNALGGNGKIDVEKWIQGKTFS------------------ 180
Query: 181 YLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPKLHI 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 AASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSILVPYGPYLYVQGMVKCQILVFYHQLV 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 VAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQVEQ 360
RDEVSRLLE+LQSRALEPSN + NTFSPQ+IEKQVEQ
Sbjct: 301 ----------------------RDEVSRLLEVLQSRALEPSNKVEDNTFSPQSIEKQVEQ 360
Query: 361 PSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNRKSE 420
PS ANRVL+M REGKQE+LERAT GNLTPHPH S KL ++GASPVDIARAYMSN+KSE
Sbjct: 361 PSTANRVLEMPREGKQEELERATGGNLTPHPH---SLKLREVGASPVDIARAYMSNQKSE 420
Query: 421 PGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRGGRF 480
PGL S+K+PDDE+A HGDHQM KPFIPSMSPNPSTCWP AMSESQRGY+TPRSQR GRF
Sbjct: 421 PGLASDKMPDDEKALRHGDHQMFKPFIPSMSPNPSTCWPSAMSESQRGYVTPRSQR-GRF 480
Query: 481 GLHTFPRTPYSRNIFSKSKSKSVCTVRRLYMINHSFTCEQLTQLQGDTQKFVNTPSPLWQ 540
GLH FPRTPYSR+IFS SKSKS +LTQLQGD QKFVNTPSPLWQ
Sbjct: 481 GLHNFPRTPYSRSIFSMSKSKS-----------------KLTQLQGDGQKFVNTPSPLWQ 540
Query: 541 QSRTPAYSLMPSNNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMKVENSN 600
+SR+P YS+M S+ DPLDEATGS+G L+HKASAVTNSRRSAYFYP +QPEM++EN N
Sbjct: 541 RSRSPTYSMMTSSKDPLDEATGSIGLTCSLQHKASAVTNSRRSAYFYPPQQPEMEIEN-N 600
Query: 601 TSEGILPDMKKNLEFEGASTIPLSQSAVNNSSDSSPLMVRPQSSQVARTILEHITRNPPT 660
SE I PDMKKNL+ GASTIPLSQS N+S+SS VRPQSSQV RTILEHITRNPPT
Sbjct: 601 ISEAIFPDMKKNLDRGGASTIPLSQSVGINNSESSLPTVRPQSSQVVRTILEHITRNPPT 660
Query: 661 PKEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSEKGKT 720
PKEKTEELKRAI+WKKT S+NV +VKPNETS+LAV++DSHQK+NQVDQNC+PQ S++GKT
Sbjct: 661 PKEKTEELKRAIEWKKTPSANVPSVKPNETSSLAVDIDSHQKANQVDQNCHPQLSDEGKT 720
Query: 721 MSMILPKESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPVPAL 780
MS +LPKE +GRN DAA QNP+G KFRLSNAE KHKDDAGLN+GSS PK VPK PAL
Sbjct: 721 MSTVLPKEGAGRNPDAANQNPYGLKFRLSNAESKHKDDAGLNIGSSSPKAVPKI--FPAL 734
Query: 781 GSKMGAQMKPSPSLGGKPVFTSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEPPTP 840
GS++ Q+KPSPSLGGKP+F SITI+KPESKW FSSDSGSAFTFPVSGASSGMLSEPPTP
Sbjct: 781 GSEVWTQIKPSPSLGGKPIFPSITISKPESKWAFSSDSGSAFTFPVSGASSGMLSEPPTP 734
Query: 841 SIFPSTSLGGSQPLLLKPETPIPSYSFGSKKSSRTLIFSFPSTNSDKILTEAS-IKFSFG 900
SIFPSTSLGG QPLLLK ETP+PSYSF SKK+S +L+FSFPS NSD I EAS IKFSFG
Sbjct: 841 SIFPSTSLGGGQPLLLKTETPVPSYSFDSKKTSPSLVFSFPSINSDTIGPEASNIKFSFG 734
Query: 901 SKDHTRLSFSSVGKDAVCC 919
S DHTRLSF SVGKDAVCC
Sbjct: 901 SDDHTRLSFGSVGKDAVCC 734
BLAST of CmUC06G119510 vs. TAIR 10
Match:
AT5G20200.1 (nucleoporin-related )
HSP 1 Score: 227.3 bits (578), Expect = 5.2e-59
Identity = 272/964 (28.22%), Postives = 401/964 (41.60%), Query Frame = 0
Query: 8 TSSTPYAGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRR-WLSKLVDPAYRLITGGATRL 67
T+++ Y GGVGGK+++ ++R+ TPY+RP +Q QRR W+S++VDPAYR+I+GGATR+
Sbjct: 14 TTTSSYPTGGVGGKLKRQSARRHAATPYSRPTQNQVQRRPWISRIVDPAYRIISGGATRI 73
Query: 68 LPYLFSKPLPSNALPSPGNVDQDKVEAEVEDNVSGEEEP----HNQRVPTLFGLPGPSGE 127
LPY FS + AL +P DQ++ + E+++N + N+ P + GPSG
Sbjct: 74 LPYFFSNAASAPALAAPPE-DQNQHQGELQNNPQDNDPSVTPISNKPEPASIEVGGPSGT 133
Query: 128 ANISENNFDFNGRKKDRE--NDALAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDTMTH 187
AN++E NF + +++ + ND +A + ++E+ ++ KTFS+ +ID +
Sbjct: 134 ANVNEGNFSISAQRRGKAALNDDVAIS---ELERLMEGKTFSQ---------AEIDRLIE 193
Query: 188 YL--RYLD-RDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPK 247
+ R +D D+ R + LE+ L+ A+++ L D
Sbjct: 194 MISSRAIDLPDVKRDERN---------LEIPLREGAKKNMSLFD---------------- 253
Query: 248 LHIAASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSILVPYGPYLYVQGMVKCQILVFYH 307
+ + +D I P
Sbjct: 254 ----------------------KAKEPIGGKDANSEIWATPTP----------------- 313
Query: 308 QLVVAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQ 367
L +LD K+ D
Sbjct: 314 -------LAKSIILDGDKIRD--------------------------------------- 373
Query: 368 VEQPSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNR 427
++G SP ++A+AYM +
Sbjct: 374 -------------------------------------------EVGLSPAELAKAYMGGQ 433
Query: 428 KSEPGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRG 487
S + +E+ L + K + S S PS CWPG S Q G+ TP+S+R
Sbjct: 434 TSSSS-SQGFVARNEKDCLDRSMLVGKSSLASPSSKPSACWPGIKSSEQSGFATPQSRRE 493
Query: 488 GRFGLHTFPRTPYSRNIFSKSKSKSVCTVRRLYMINHSFTCEQLTQLQGDTQKFV-NTPS 547
+GL FPRTPYSR I S SKSK L QLQ D+ K + N S
Sbjct: 494 S-YGLQNFPRTPYSRTILSNSKSK-------------------LMQLQNDSSKHLSNLQS 553
Query: 548 PLWQQSRTPAYSLMPSNNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMKV 607
P QS Y + D G GP RR R A T S S Y P+R +
Sbjct: 554 P--SQSVERRYGQLSKGRD-----GGLFGPSRRTRQSA---TPSMVSPYSRPSRGAS-RF 613
Query: 608 ENSNTSEGILPDMKKNLEFEGASTIPLSQSAV---NNSSDSSPLMVRPQSSQVARTILEH 667
ENS + K+ E +S + SQ + ++ L V SSQ+ARTIL+H
Sbjct: 614 ENS--------AIMKSSEAGESSYLSRSQITTYGKHKEAEVGTLTVPTHSSQIARTILDH 673
Query: 668 I--TRNPPTPKEKTEELKRAIQWK--------KTSSSNVQTVKPNETSNLAVELDSHQKS 727
+ T++ TPK KT ELK A W+ + SSS+V VK + ++ L ++ +
Sbjct: 674 LERTQSQSTPKNKTAELKLATSWRHPQSSKTVEKSSSDVTNVKKDGSAKLHEDIQNIFSQ 733
Query: 728 NQVDQNCNPQSSEKG-------KTMSM---ILPKESSGRNSDAAIQNPFG-PKFRLSNAE 787
NQ P ++ G KT S I + + A+Q FG PK LS +
Sbjct: 734 NQPSSVLKPPATTTGDIQNGMNKTASATNGIFRGTQAASSGGNALQYEFGKPKGSLSRS- 762
Query: 788 PKHKDDAGLNVGSSLPKVVPKTVPVPALGSKMGAQMKPSPSLG-GKPVFTSITINKPESK 847
D+ G + + K VP G PS SLG KPV SI++ KP K
Sbjct: 794 --MHDELGTS-----SQDAAKAVPYSFGGETANLPKPPSHSLGNNKPVLPSISVAKPFQK 762
Query: 848 WTFSSDSGSAFTFPVSGASSGMLSEPPTPSIFPST-----SLGGSQPLL----LKPETPI 907
W S S + FTFPVS + SEP TPSI P T + GG + + + I
Sbjct: 854 WAVPSGSNAGFTFPVSSSDGTTSSEPTTPSIMPFTTSPPVASGGGVAITNHHEARKDYEI 762
Query: 908 PSYSF-GSKK--SSRTLIFSFPSTNSDKILTE-----ASIKFSFGSKDHTRLSFSSVGKD 919
P +SF GS + L+FSFPS S+++++E IK++FGS+ R+SFSS G D
Sbjct: 914 PQFSFDGSNRRGDKSPLVFSFPSV-SEEVVSEDDDARFGIKYTFGSEKPERISFSSAGSD 762
BLAST of CmUC06G119510 vs. TAIR 10
Match:
AT3G10650.1 (BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). )
HSP 1 Score: 66.2 bits (160), Expect = 1.5e-10
Identity = 67/197 (34.01%), Postives = 83/197 (42.13%), Query Frame = 0
Query: 1 MERAEEGTSSTPYAGG-GVGGKVRKPTSRKPPPTPYARPV----------HDQSQRRWLS 60
M A G SS PY GG G GGK RKPT+R+ TPY RP D WLS
Sbjct: 1 MASAARGESSNPYGGGLGTGGKFRKPTARRSQKTPYDRPTTSVRNAGLGGGDVRGGGWLS 60
Query: 61 KLVDPAYRLITGGATRLLPYLFSKPLPSNALPSPGNVDQDKVE---AEVEDNVSGEEEPH 120
KLVDPA RLIT A RL L K L S P Q ++ E V +E+
Sbjct: 61 KLVDPAQRLITYSAQRLFGSLSRKRLGSGETPLQSPEQQKQLPERGVNQETKVGHKEDVS 120
Query: 121 NQRVPTLFGLPGPSGEANISENNFDFNGRKKDRENDALAGNRKFDVEKWIQEKTFSRNMN 180
N L +G + + N D D D+EK +Q KTF+R+
Sbjct: 121 N--------LSMKNGLIRMEDTN-----ASVDPPKDGFT-----DLEKILQGKTFTRS-- 170
Query: 181 MATIHDIDIDTMTHYLR 184
++D +T LR
Sbjct: 181 -------EVDRLTTLLR 170
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038879645.1 | 0.0e+00 | 69.10 | nuclear pore complex protein NUP1 isoform X2 [Benincasa hispida] | [more] |
XP_038879644.1 | 0.0e+00 | 66.21 | nuclear pore complex protein NUP1 isoform X1 [Benincasa hispida] | [more] |
XP_008443985.1 | 0.0e+00 | 65.55 | PREDICTED: nuclear pore complex protein NUP1 isoform X3 [Cucumis melo] | [more] |
XP_008443983.1 | 4.9e-309 | 65.48 | PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Cucumis melo] | [more] |
XP_008443984.1 | 8.5e-309 | 65.48 | PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
Q9CAF4 | 2.1e-09 | 34.01 | Nuclear pore complex protein NUP1 OS=Arabidopsis thaliana OX=3702 GN=NUP1 PE=1 S... | [more] |
Match Name | E-value | Identity | Description | |
A0A1S3B9A7 | 0.0e+00 | 65.55 | nuclear pore complex protein NUP1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10348... | [more] |
A0A1S3BA46 | 2.4e-309 | 65.48 | nuclear pore complex protein NUP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348... | [more] |
A0A1S3B8V2 | 4.1e-309 | 65.48 | nuclear pore complex protein NUP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348... | [more] |
A0A5A7U707 | 2.7e-305 | 65.08 | Nuclear pore complex protein NUP1 isoform X2 OS=Cucumis melo var. makuwa OX=1194... | [more] |
A0A6J1HA42 | 7.8e-305 | 64.64 | nuclear pore complex protein NUP1-like isoform X1 OS=Cucurbita moschata OX=3662 ... | [more] |
Match Name | E-value | Identity | Description | |
AT5G20200.1 | 5.2e-59 | 28.22 | nucleoporin-related | [more] |
AT3G10650.1 | 1.5e-10 | 34.01 | BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.... | [more] |