CmUC06G119470 (gene) Watermelon (USVL531) v1

Overview
NameCmUC06G119470
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionEpidermal patterning factor-like protein
LocationCmU531Chr06: 22738912 .. 22741127 (+)
RNA-Seq ExpressionCmUC06G119470
SyntenyCmUC06G119470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTAAAAAACTCTCTCCTTCTCATTCTTCCTCTCATATTTTGCCTTTTTATCTCTCTCCCCACATCAGGTAAAACACCCCTTTACCTCATAATCATTATTAATCCAAACTTATAGGCATATATATGTGTGTGTATATATATATTTATATGAAATATCAATCCAATTTGTTTTGGAATATCAGGGCATGAGGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCAAAGCAGAAGGAATTGGTAATTGGGTCAAGGCCACCACAGTGCTTCAACAAGTGCTTAAATTGCAAGCCATGTGTTGCTGCTTTGGTTATTTCTCAGCGCCATAAAGATGATGACAATAATATTATTGTTTCTAATTTGGAGGCAGATCTTATTCCAGTTCCTAAAGATGATGCTTATTATCTTCTCTCATGGAAATGTAAGTGTAAAGATAAGTACTTTCAACCTTGAATTAAACACGAACTTTCACTTTCCCCTGTATCATATAAGAAGATATTAATTATTATTATTCCTCAAACCTTATCTTTTCCTAACACAGTTTTTATTAGTCCTGTGGAATCTACAAGCTATTTAATGCGAATATAAGTTAGTTGTTTTCGTTGAATCAGATGGATTTGATCATTGGACCACTTTACTTTTAATTGTTTGTGGTAATCATTATACAATTTGAGGTAATCATAAAATAGATTTATTGGGAAATCGAAATAGTTTTATTTTCATAATTTTTTAAGTTGATGGGTTGGTTTGTATTAGTTAGGGGTGTGGTTTTGAGTAATTGAATGGTCGTAGTCATACTGCTGTACTTGGGCCGACCAATTTTAGAGATGCAGCAAAGGAAATCTTTTTAATTTAAAGCTCAGTTCTTTACAGCAAAAAATTGGGGTGTGTGTTAAGATGAAAACAGTCATTGTTGTATATTTCAACTTAGACATGATGATGAGCAGCAGCGAGAAAACGTTAATGTTTCTGCTGGACCATGTTCAGATCTTATGTTTGTGTATACAGATATATTTATATAGATAGATAGATATATGTACCTTTTCCTCAACAGCTACGAGCCAAATTGAATACAAAACTTGAAACCTCCCTTTCAGAGTTATTATGACATGTTCCAAGAGAAATTCAAGAAAAATATTTTGAATTTTAAAATAATAATAATAATAAGGTAAGCACCTCGACTTCTTAATTTTCCACCGTCATCCTATCAATGTTGACCAACCTCTAAGTTCAATGCGAGTAGTTTAGAGCCCATTTCATCCCTTTACTTTTTTAAGAATGGTTTTCATTGAATTCTTAGACAAATTTGAAAAACAAAAACTCACCTTTTTTTTTTTCGTTTGCAAGAAAAAGAAAACAAGGACACTTGTTAAATGAGAGTATTGTTTATAATAAAATTATTTTAAATGACAAAAATGCTGAAAATATTTACAAATAATAGCAAAATATCACAATCTATCTGCAATAGACCGTGATAAACTACTATATGTGTCTATCATGACATATATAATAATCTATTGCGATCTATTATAGATAGACAATAAAATTTTACTATATTTATAAATATTTTGATTCATTTTCCTATATTTAAAAACAACCCTCGTTGAAATTAAATGATTACCAAACGAAACATTAATATTTACTTATTTGAAGTTTCAAATTTTGACTAGTACGTAAGGCTTGAAGAAGGGAGAAGGAAAGCCTCTGATTCTGACATGCCCCCCATCATTCATGTACAATGATAATGATCACTGAAATGTTTAAGAGTGGTACTCCAAAATTCTTAATCTAAAATCACAAGAAAAAGATTATCCTTAAAAAATAGATAGTTTATAAAGGACTATGGTGAGTTATTAACAAATCTACATTTAACGGCTCTCAGCAAGAAGATTCTAAATTTATTTTCAATGACATTTCTGTACAATCCATGGCAAATTTCCTACACCCCCTCATTTCTTTTCTTTTTCCTCTTTTGTAATGAAACCTTTAAATACAGGACTGATGAGAATTCCAAGGGGTTTATGAAGAAAATTAAACACACACACATATACATACACACTTCCTGTGTTATATCATTTGCAGCTTAGCCCTTTTTGTTCTCTAAATCATAGACAGCATATACTGAAGTTCAGATCATAGACAAAGTGAAGCTTCATGATCGTCTGCTGCATCATTGA

mRNA sequence

ATGGCTTTAAAAAACTCTCTCCTTCTCATTCTTCCTCTCATATTTTGCCTTTTTATCTCTCTCCCCACATCAGGGCATGAGGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCAAAGCAGAAGGAATTGGTAATTGGGTCAAGGCCACCACAGTGCTTCAACAAGTGCTTAAATTGCAAGCCATGTGTTGCTGCTTTGGTTATTTCTCAGCGCCATAAAGATGATGACAATAATATTATTGTTTCTAATTTGGAGGCAGATCTTATTCCAGTTCCTAAAGATGATGCTTATTATCTTCTCTCATGGAAATCATATACTGAAGTTCAGATCATAGACAAAGTGAAGCTTCATGATCGTCTGCTGCATCATTGA

Coding sequence (CDS)

ATGGCTTTAAAAAACTCTCTCCTTCTCATTCTTCCTCTCATATTTTGCCTTTTTATCTCTCTCCCCACATCAGGGCATGAGGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCAAAGCAGAAGGAATTGGTAATTGGGTCAAGGCCACCACAGTGCTTCAACAAGTGCTTAAATTGCAAGCCATGTGTTGCTGCTTTGGTTATTTCTCAGCGCCATAAAGATGATGACAATAATATTATTGTTTCTAATTTGGAGGCAGATCTTATTCCAGTTCCTAAAGATGATGCTTATTATCTTCTCTCATGGAAATCATATACTGAAGTTCAGATCATAGACAAAGTGAAGCTTCATGATCGTCTGCTGCATCATTGA

Protein sequence

MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPPQCFNKCLNCKPCVAALVISQRHKDDDNNIIVSNLEADLIPVPKDDAYYLLSWKSYTEVQIIDKVKLHDRLLHH
Homology
[Close]
BLAST of CmUC06G119470 vs. NCBI nr
Match: XP_038879118.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Benincasa hispida])

HSP 1 Score: 181.4 bits (459), Expect = 5.1e-42
Identity = 105/115 (91.30%), Postives = 108/115 (93.91%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSFSSSSSSKQKELVIGSR 60
           MALKNSLLLILPLIFCLF S PTSGHEDSS SSSSSSSSSSSS SSSSSSKQKELVIGSR
Sbjct: 1   MALKNSLLLILPLIFCLFFSHPTSGHEDSSPSSSSSSSSSSSS-SSSSSSKQKELVIGSR 60

Query: 61  PPQCFNKCLNCKPCVAALVISQRHKDDDNNIIVSNLEADLIPVPKDDAYYLLSWK 116
           PPQCFNKCLNCKPCVAALVISQ HK+DD  I+VSNLEADL+PVPKDDAYYLLSWK
Sbjct: 61  PPQCFNKCLNCKPCVAALVISQNHKNDD--IVVSNLEADLLPVPKDDAYYLLSWK 112

[Close]
BLAST of CmUC06G119470 vs. NCBI nr
Match: XP_031736064.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 1.9e-36
Identity = 91/118 (77.12%), Postives = 103/118 (87.29%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSFSSSSSSKQKELVIGSR 60
           MALK+SLLLILPL+FCLF+S PTSGH+ + SSSSSSS       SSSSSSKQKELVIGSR
Sbjct: 1   MALKHSLLLILPLLFCLFLSPPTSGHQQNFSSSSSSS-------SSSSSSKQKELVIGSR 60

Query: 61  PPQCFNKCLNCKPCVAALVISQRH---KDDDNNIIVSNLEADLIPVPKDDAYYLLSWK 116
           PPQCFNKCLNCKPCVAALVISQRH    +DD++++VSNLEADL+PVPK +AYYLLSWK
Sbjct: 61  PPQCFNKCLNCKPCVAALVISQRHTNNSNDDDHLVVSNLEADLLPVPKHNAYYLLSWK 111

[Close]
BLAST of CmUC06G119470 vs. NCBI nr
Match: KAE8653105.1 (hypothetical protein Csa_020083, partial [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 1.9e-36
Identity = 91/118 (77.12%), Postives = 103/118 (87.29%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSFSSSSSSKQKELVIGSR 60
           MALK+SLLLILPL+FCLF+S PTSGH+ + SSSSSSS       SSSSSSKQKELVIGSR
Sbjct: 37  MALKHSLLLILPLLFCLFLSPPTSGHQQNFSSSSSSS-------SSSSSSKQKELVIGSR 96

Query: 61  PPQCFNKCLNCKPCVAALVISQRH---KDDDNNIIVSNLEADLIPVPKDDAYYLLSWK 116
           PPQCFNKCLNCKPCVAALVISQRH    +DD++++VSNLEADL+PVPK +AYYLLSWK
Sbjct: 97  PPQCFNKCLNCKPCVAALVISQRHTNNSNDDDHLVVSNLEADLLPVPKHNAYYLLSWK 147

[Close]
BLAST of CmUC06G119470 vs. NCBI nr
Match: XP_008443990.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo])

HSP 1 Score: 158.7 bits (400), Expect = 3.6e-35
Identity = 87/117 (74.36%), Postives = 99/117 (84.62%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSFSSSSSSKQKELVIGSR 60
           MALK+SLLLILPL+F LF+S PTSGHE + SS            SSSSSSKQKELVIGSR
Sbjct: 1   MALKHSLLLILPLLFSLFLSHPTSGHEQNFSS------------SSSSSSKQKELVIGSR 60

Query: 61  PPQCFNKCLNCKPCVAALVISQRHKDDDNNIIVSNLEADLIPVPKDDAYYLLSWKSY 118
           PPQCFNKCLNCKPCVAALVISQRH +++NN++VSNLEADL+PVP+DDAYYLLSWK +
Sbjct: 61  PPQCFNKCLNCKPCVAALVISQRH-NNNNNLVVSNLEADLLPVPEDDAYYLLSWKYF 104

[Close]
BLAST of CmUC06G119470 vs. NCBI nr
Match: XP_022933441.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 isoform X2 [Cucurbita moschata] >KAG7021781.1 EPIDERMAL PATTERNING FACTOR-like protein 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.3 bits (329), Expect = 6.1e-27
Identity = 76/117 (64.96%), Postives = 81/117 (69.23%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSFSSSSSSKQKELVIGSR 60
           MAL NSL LILPLIF L +  PTSG+ED                     SKQKEL IGSR
Sbjct: 1   MALNNSLFLILPLIFSLSVFHPTSGNED---------------------SKQKELAIGSR 60

Query: 61  PPQCFNKCLNCKPCVAALVISQRHKDDDNNI--IVSNLEADLIPVPKDDAYYLLSWK 116
           PP+CFNKCLNCKPCVAALVISQRHK DD+N   +VSNLEA    VPKDDAYYLLSWK
Sbjct: 61  PPKCFNKCLNCKPCVAALVISQRHKGDDSNNGGVVSNLEA--AQVPKDDAYYLLSWK 94

[Close]
BLAST of CmUC06G119470 vs. ExPASy Swiss-Prot
Match: Q1G3V9 (EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EPFL8 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.4e-04
Identity = 21/41 (51.22%), Postives = 26/41 (63.41%), Query Frame = 0 

Query: 51 KQKELVIGSRPPQCFNKCLNCKPCVAALV-ISQRHKDDDNN 91
          + KE V+GS PP C  KC NCKPC+  L  I   H DDD++
Sbjct: 40 RMKESVMGSEPPVCATKCRNCKPCLPYLFDIRGAHDDDDDS 80

[Close]
BLAST of CmUC06G119470 vs. ExPASy TrEMBL
Match: A0A1S3B8V6 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103487443 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.7e-35
Identity = 87/117 (74.36%), Postives = 99/117 (84.62%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSFSSSSSSKQKELVIGSR 60
           MALK+SLLLILPL+F LF+S PTSGHE + SS            SSSSSSKQKELVIGSR
Sbjct: 1   MALKHSLLLILPLLFSLFLSHPTSGHEQNFSS------------SSSSSSKQKELVIGSR 60

Query: 61  PPQCFNKCLNCKPCVAALVISQRHKDDDNNIIVSNLEADLIPVPKDDAYYLLSWKSY 118
           PPQCFNKCLNCKPCVAALVISQRH +++NN++VSNLEADL+PVP+DDAYYLLSWK +
Sbjct: 61  PPQCFNKCLNCKPCVAALVISQRH-NNNNNLVVSNLEADLLPVPEDDAYYLLSWKYF 104

[Close]
BLAST of CmUC06G119470 vs. ExPASy TrEMBL
Match: A0A6J1JFP8 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485317 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.0e-27
Identity = 76/115 (66.09%), Postives = 83/115 (72.17%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSFSSSSSSKQKELVIGSR 60
           MALK+SLLLILPLIF L +S PTSG+ED                    SS+QKELVIGSR
Sbjct: 1   MALKSSLLLILPLIFSLSLSHPTSGNED--------------------SSRQKELVIGSR 60

Query: 61  PPQCFNKCLNCKPCVAALVISQRHKDDDNNIIVSNLEADLIPVPKDDAYYLLSWK 116
           PP+CFNKCLNC+PCVAALVISQRHK   NN   SNLEA L P P+DDAYYLLSWK
Sbjct: 61  PPRCFNKCLNCRPCVAALVISQRHKGVHNNAF-SNLEAAL-PAPRDDAYYLLSWK 93

[Close]
BLAST of CmUC06G119470 vs. ExPASy TrEMBL
Match: A0A6J1EZ19 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111440854 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.0e-27
Identity = 76/117 (64.96%), Postives = 81/117 (69.23%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSFSSSSSSKQKELVIGSR 60
           MAL NSL LILPLIF L +  PTSG+ED                     SKQKEL IGSR
Sbjct: 1   MALNNSLFLILPLIFSLSVFHPTSGNED---------------------SKQKELAIGSR 60

Query: 61  PPQCFNKCLNCKPCVAALVISQRHKDDDNNI--IVSNLEADLIPVPKDDAYYLLSWK 116
           PP+CFNKCLNCKPCVAALVISQRHK DD+N   +VSNLEA    VPKDDAYYLLSWK
Sbjct: 61  PPKCFNKCLNCKPCVAALVISQRHKGDDSNNGGVVSNLEA--AQVPKDDAYYLLSWK 94

[Close]
BLAST of CmUC06G119470 vs. ExPASy TrEMBL
Match: A0A6J1HB97 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111461746 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.0e-27
Identity = 76/115 (66.09%), Postives = 83/115 (72.17%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSFSSSSSSKQKELVIGSR 60
           MALK+SLLLILPLIF L +S PTSG+ED                    SSKQKELVIGSR
Sbjct: 1   MALKSSLLLILPLIFSLSLSHPTSGNED--------------------SSKQKELVIGSR 60

Query: 61  PPQCFNKCLNCKPCVAALVISQRHKDDDNNIIVSNLEADLIPVPKDDAYYLLSWK 116
           PP+CFNKCLNC+PCVAALVISQRHK   NN   S+LEA L P P+DDAYYLLSWK
Sbjct: 61  PPRCFNKCLNCRPCVAALVISQRHKGVHNNAF-SSLEAAL-PAPRDDAYYLLSWK 93

[Close]
BLAST of CmUC06G119470 vs. ExPASy TrEMBL
Match: A0A6J1I4N2 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111470622 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.3e-26
Identity = 75/117 (64.10%), Postives = 80/117 (68.38%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSFSSSSSSKQKELVIGSR 60
           MAL NSL LILPLIF L + LPTSG+ED                     SKQKEL IGSR
Sbjct: 67  MALNNSLFLILPLIFSLSVFLPTSGNED---------------------SKQKELAIGSR 126

Query: 61  PPQCFNKCLNCKPCVAALVISQRHKDDDNNI--IVSNLEADLIPVPKDDAYYLLSWK 116
           PP+CFNKCLNCKPCVAALVISQR K  DNN   +VSN+EA    VPKDDAYYLLSWK
Sbjct: 127 PPKCFNKCLNCKPCVAALVISQRLKGYDNNNGGVVSNMEA--AQVPKDDAYYLLSWK 160

[Close]
BLAST of CmUC06G119470 vs. TAIR 10
Match: AT1G80133.1 (unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.4e-05
Identity = 21/41 (51.22%), Postives = 26/41 (63.41%), Query Frame = 0 

Query: 51 KQKELVIGSRPPQCFNKCLNCKPCVAALV-ISQRHKDDDNN 91
          + KE V+GS PP C  KC NCKPC+  L  I   H DDD++
Sbjct: 40 RMKESVMGSEPPVCATKCRNCKPCLPYLFDIRGAHDDDDDS 80

The following BLAST results are available for this feature:
BLAST of CmUC06G119470 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038879118.15.1e-4291.30EPIDERMAL PATTERNING FACTOR-like protein 8 [Benincasa hispida][more]
XP_031736064.11.9e-3677.12EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucumis sativus][more]
KAE8653105.11.9e-3677.12hypothetical protein Csa_020083, partial [Cucumis sativus][more]
XP_008443990.13.6e-3574.36PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo][more]
XP_022933441.16.1e-2764.96EPIDERMAL PATTERNING FACTOR-like protein 8 isoform X2 [Cucurbita moschata] >KAG7... [more]
BLAST of CmUC06G119470 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q1G3V93.4e-0451.22EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
BLAST of CmUC06G119470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B8V61.7e-3574.36Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103487443... [more]
A0A6J1JFP83.0e-2766.09Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1EZ193.0e-2764.96Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1HB975.0e-2766.09Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1I4N24.3e-2664.10Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11147... [more]
BLAST of CmUC06G119470 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G80133.12.4e-0551.22unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 prot... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF17181EPFcoord: 56..115
e-value: 5.9E-11
score: 42.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..54
NoneNo IPR availablePANTHERPTHR33109:SF57EPIDERMAL PATTERNING FACTOR-LIKE PROTEINcoord: 3..116
IPR039455EPIDERMAL PATTERNING FACTOR-like proteinPANTHERPTHR33109EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4coord: 3..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC06G119470.1CmUC06G119470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010052 guard cell differentiation
biological_process GO:0010374 stomatal complex development
cellular_component GO:0005576 extracellular region