CmUC06G118940 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G118940
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Location	CmU531Chr06: 21946628 .. 21948657 (-)
RNA-Seq Expression	CmUC06G118940
Synteny	CmUC06G118940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGTTCAACTAGTCGAGAAGAGAATGACATGAAGATGGCATGAGAATCTTATAGTCAAACCTTGTCAAACGTGCAAATCAATGTTGTCGCCTCTTATAGGAGTTATTTAAGACAATTTGAAGACTTTCTACATTTTTAGTTTTGCATTTTGACTTATTAATTAGTATGCAATTAAATCTTAAGTTCCTAGGTAGATATTTCTACAATTTGCATTTAATAGTGTTGAATGACTTTTGAGTTCTTGGTCATATCCACGACCTTTTGGCCTTTAAAAAGGCTTGTTATCCTCTTCAAAAGAGAGATCATTAATATTAAAAATCTTGTGCTTATTCAACCCCTTTGGTATTGCCTTTTCTTTCGAATCTTGCTTTAGATTTGATGTTGTAATTCATTGGATTAGTCTTGATTAAGCTAATTCTGGATTGAGTTGTCTTAGGATCTAAGTGTGACCATCATAGATTCTAAGTTTGATCTAAGTTAACTTTATTTGTGAGTGTTTGCAAGGATCCTAGAAAGACCTCTAGCTTTGCATCTAACGAACATTGCGGGCACTTATCATTTGGTATTAGAGCATTTGGTCATCATCCTTGGTCAGCTCTAGAGGTGAAATATCTTTACTTTGTTTCATTTACTTTTTGATTCTCAATTTTTTTCTCGTGTAATACAAGACATACTACAACTTGTTTTGAAATCTTCTTCAAATTTGCTCTTGTATCATTATAAAAAAAAAATCGATAGCGAAAAAAAAAAAGAAAAAGAAAAAGAAAAAAAATCAGTAACAAAAAAAAGTATTAAAAAAAATTGAAGATCCAAGGCACATGAAAAGTTCTTGTCATATCCTTTTACTTTATTCTAATTTTAAAGTTGTTAATCCTAAGTTTGAGTTACTCTAGTCTTAGTTTGTGAGAGTTGATCGTTTGAATTGGTTACATCAAATTTTTAGTAAGATTGCACCAAAATTTAAGTCAACCCTCACATCTTTGACCTAGTATCAAAAGCCTACCCTTGAGTGATAAACACGAGTGTCTTTGAGTGAAATTAGTGAGAAATGTGGAAAGGTCCTTTTATTACTAACCTGAAAATGTCATAAGGTGAAGGAGTACTACAAGTACAAGATCCTAACATGGCTATTCTTCAAGGCATGATGGAAATGATAGAAGATAGGCAAGAAAGGAGGGCATAACAAGAAAGAGAAGAACGAGCCTTGTTAGAAGATGAAGAAATTTTTTATCTAGTGGAGCAAGAAAGACAAGTTGGAGGGAGAGGAAATGTGAGAGAAAGAGGAAGAAATTATGCAAGCTAGAAGAGGAGAAAGAATTCACGAAGATAGAGATAACAGAATTAAGCTTAAAACTCCACCCTTTAGTGAAACGGTAGACGGGAAGGCAGGAATGGGAAAGGAAGATAGAACATGTGTTTGATTGTAACACATATAGTGAGAATAAGAAGATGAGACTTGCCATTATCGAATTCACCAACCATGCTGGAAATTGGTATCATTATCTCAAATCCGAGAGAAGAAGGAAGCTTTGAGGCAAGGAACAAAAAGTGTGGCTGAATATTATCAATAGATGGAGATTTCGATGGAAAGAGCACAAATCTGAGAAAATGAGGAAGAAACCATATCTAGATTCCTTGGAGGCTTGAATTGAGACATTGGTCATCCAATTGATAGAAATGCACAATCTTACTTGGAAGATATGTATGATTGTGCAATCAAAATTAAAGATCAATTGAGAGAAGAAAAGGAGCATTCCAAAAGGCGTACTTCTAAAGCTAATACCTTTCCAAATTCTAATACCCTGGGAACAAGGATGGTTTTGTGAATAGAAGTGAACCAAAAGGGAAGTTTGTGGTTGCCAAAAGAGCGAAGGCCAAGAGCTCCAATGCTAAAAAGAATGAAGCTCTAAAGGAGGTTAGGGAGAAGTCTAGTTCTATTGAATGTTGGAAGTGCAAGGTGTTTGGGCACTTGAGCAAAGATTGTGTCAATAAAAGGGTCATGGTGATAAGAAAATGGGATACTTGA

mRNA sequence

ATGTTAGATCCTAGAAAGACCTCTAGCTTTGCATCTAACGAACATTGCGGGCACTTATCATTTGGTATTAGAGCATTTGGTCATCATCCTTGGTCAGCTCTAGAGTGGAGCAAGAAAGACAAGTTGGAGGGAGAGGAAATAAGTGAACCAAAAGGGAAGTTTGTGGTTGCCAAAAGAGCGAAGGCCAAGAGCTCCAATGCTAAAAAGAATGAAGCTCTAAAGGAGGTTAGGGAGAAGTCTAGTTCTATTGAATGTTGGAAGTGCAAGGTGTTTGGGCACTTGAGCAAAGATTGTGTCAATAAAAGGGTCATGGTGATAAGAAAATGGGATACTTGA

Coding sequence (CDS)

ATGTTAGATCCTAGAAAGACCTCTAGCTTTGCATCTAACGAACATTGCGGGCACTTATCATTTGGTATTAGAGCATTTGGTCATCATCCTTGGTCAGCTCTAGAGTGGAGCAAGAAAGACAAGTTGGAGGGAGAGGAAATAAGTGAACCAAAAGGGAAGTTTGTGGTTGCCAAAAGAGCGAAGGCCAAGAGCTCCAATGCTAAAAAGAATGAAGCTCTAAAGGAGGTTAGGGAGAAGTCTAGTTCTATTGAATGTTGGAAGTGCAAGGTGTTTGGGCACTTGAGCAAAGATTGTGTCAATAAAAGGGTCATGGTGATAAGAAAATGGGATACTTGA

Protein sequence

MLDPRKTSSFASNEHCGHLSFGIRAFGHHPWSALEWSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIRKWDT

Homology

[Close]

BLAST of CmUC06G118940 vs. NCBI nr
Match: XP_022158838.1 (uncharacterized protein LOC111025303 [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-17
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 36  WSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLS 95
           W K   +   E  +PKGKFV AKR + +SSN KKNEA KEVRE +SSI+CWKCK FGH+S
Sbjct: 250 WKKAGFVNRNESMQPKGKFVAAKRMEGESSNTKKNEAPKEVRENTSSIQCWKCKGFGHMS 309

Query: 96  KDCVNKRVMVIR 108
           KDCVNKRVMVIR
Sbjct: 310 KDCVNKRVMVIR 321

[Close]

BLAST of CmUC06G118940 vs. NCBI nr
Match: XP_022153198.1 (uncharacterized protein LOC111020753 [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-16
Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 36  WSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLS 95
           W+K   +   E  +PK KFV AKR + +SSN K+NEA KEVREK+SSI+CWKCK FGH+S
Sbjct: 284 WNKAGFVNRNESLQPKEKFVAAKRMEGESSNTKRNEAPKEVREKTSSIQCWKCKGFGHMS 343

Query: 96  KDCVNKRVMVIR 108
           KDCVNKRVMVIR
Sbjct: 344 KDCVNKRVMVIR 355

[Close]

BLAST of CmUC06G118940 vs. NCBI nr
Match: TYK06180.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-16
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 48  SEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR 107
           SE KGKFVVAKR +A+SSN+KKNEA KE +EKS+S++CWKCK FGH+SKDCVNK+VMVIR
Sbjct: 72  SEAKGKFVVAKRMEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIR 131

[Close]

BLAST of CmUC06G118940 vs. NCBI nr
Match: KAA0025749.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-16
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 48  SEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR 107
           SE KGKFVVAKR +A+SSN+KKNEA KE +EKS+S++CWKCK FGH+SKDCVNK+VMVIR
Sbjct: 72  SEAKGKFVVAKRMEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIR 131

[Close]

BLAST of CmUC06G118940 vs. NCBI nr
Match: XP_022932136.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111438459, partial [Cucurbita moschata])

HSP 1 Score: 95.1 bits (235), Expect = 4.0e-16
Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 36  WSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLS 95
           W+K   +   E   PK KFV AKR +A+SSN KKNEA K V+EKSSSI+CWKCK FGH+S
Sbjct: 249 WNKDSFVNRNESMSPKEKFVAAKRVEAESSNCKKNEASKTVQEKSSSIQCWKCKGFGHMS 308

Query: 96  KDCVNKRVMVIR 108
           K+CVNK+VMVIR
Sbjct: 309 KECVNKKVMVIR 320

[Close]

BLAST of CmUC06G118940 vs. ExPASy TrEMBL
Match: A0A6J1DX75 (uncharacterized protein LOC111025303 OS=Momordica charantia OX=3673 GN=LOC111025303 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 36  WSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLS 95
           W K   +   E  +PKGKFV AKR + +SSN KKNEA KEVRE +SSI+CWKCK FGH+S
Sbjct: 250 WKKAGFVNRNESMQPKGKFVAAKRMEGESSNTKKNEAPKEVRENTSSIQCWKCKGFGHMS 309

Query: 96  KDCVNKRVMVIR 108
           KDCVNKRVMVIR
Sbjct: 310 KDCVNKRVMVIR 321

[Close]

BLAST of CmUC06G118940 vs. ExPASy TrEMBL
Match: A0A6J1DGU9 (uncharacterized protein LOC111020753 OS=Momordica charantia OX=3673 GN=LOC111020753 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.1e-17
Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 36  WSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLS 95
           W+K   +   E  +PK KFV AKR + +SSN K+NEA KEVREK+SSI+CWKCK FGH+S
Sbjct: 284 WNKAGFVNRNESLQPKEKFVAAKRMEGESSNTKRNEAPKEVREKTSSIQCWKCKGFGHMS 343

Query: 96  KDCVNKRVMVIR 108
           KDCVNKRVMVIR
Sbjct: 344 KDCVNKRVMVIR 355

[Close]

BLAST of CmUC06G118940 vs. ExPASy TrEMBL
Match: A0A5D3C4C3 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00340 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 48  SEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR 107
           SE KGKFVVAKR +A+SSN+KKNEA KE +EKS+S++CWKCK FGH+SKDCVNK+VMVIR
Sbjct: 72  SEAKGKFVVAKRMEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIR 131

[Close]

BLAST of CmUC06G118940 vs. ExPASy TrEMBL
Match: A0A5A7SKE7 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00370 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 48  SEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR 107
           SE KGKFVVAKR +A+SSN+KKNEA KE +EKS+S++CWKCK FGH+SKDCVNK+VMVIR
Sbjct: 72  SEAKGKFVVAKRMEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIR 131

[Close]

BLAST of CmUC06G118940 vs. ExPASy TrEMBL
Match: A0A6J1EVI6 (LOW QUALITY PROTEIN: uncharacterized protein LOC111438459 OS=Cucurbita moschata OX=3662 GN=LOC111438459 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 36  WSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLS 95
           W+K   +   E   PK KFV AKR +A+SSN KKNEA K V+EKSSSI+CWKCK FGH+S
Sbjct: 249 WNKDSFVNRNESMSPKEKFVAAKRVEAESSNCKKNEASKTVQEKSSSIQCWKCKGFGHMS 308

Query: 96  KDCVNKRVMVIR 108
           K+CVNK+VMVIR
Sbjct: 309 KECVNKKVMVIR 320

The following BLAST results are available for this feature:

BLAST of CmUC06G118940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158838.1	2.1e-17	68.06	uncharacterized protein LOC111025303 [Momordica charantia]	[more]
XP_022153198.1	1.0e-16	66.67	uncharacterized protein LOC111020753 [Momordica charantia]	[more]
TYK06180.1	3.0e-16	76.67	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0025749.1	3.0e-16	76.67	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
XP_022932136.1	4.0e-16	65.28	LOW QUALITY PROTEIN: uncharacterized protein LOC111438459, partial [Cucurbita mo...	[more]

BLAST of CmUC06G118940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC06G118940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DX75	1.0e-17	68.06	uncharacterized protein LOC111025303 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DGU9	5.1e-17	66.67	uncharacterized protein LOC111020753 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A5D3C4C3	1.5e-16	76.67	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7SKE7	1.5e-16	76.67	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1EVI6	1.9e-16	65.28	LOW QUALITY PROTEIN: uncharacterized protein LOC111438459 OS=Cucurbita moschata ...	[more]

BLAST of CmUC06G118940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 59..79
None	No IPR available	GENE3D	4.10.60.10		coord: 55..105 e-value: 2.9E-5 score: 25.8
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 85..98 score: 8.828579
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 79..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G118940.1	CmUC06G118940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding