CmUC06G115470 (gene) Watermelon (USVL531) v1

Overview
NameCmUC06G115470
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B
LocationCmU531Chr06: 8650863 .. 8655321 (+)
RNA-Seq ExpressionCmUC06G115470
SyntenyCmUC06G115470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCCCTCTGTACTCTACTTCAGCCTTTCCTTCGTTTCTTTCAGTTCCTTTCGTCTTCGGAACCTCCCAATTCCCAAATCCCATTTCTCCACTACACCTAGCTCTTGCTTGATTCGTCTATTTGATCGTCGGCAAAGCTCTCTGAGATGACGGAGGCCGCGATTCGGAAGAAGCCTGGCATGGCCAGCGTCAAAGACATGCCGATCCTCCAAGACGGGCCACCGCCGGGTGGATTCGCTCCGGTTCGCTACGCTCGCCGGATTCCCACCAAAGGCCCTAGCGCCATGGCCATTTTCCTTACTGCTTTTGGTGCATTCTCTTGGGGGATGTATCAGGTCGGCAAGGGCAACAAGATCCGAAGGTCTGTATTTTCTCCCCAATTATCTTAGTTTAGTCTATGGTCATTACCTGTTTTTATATCATTTCACTAGAAATGGAATTGATTGCTTTTTTAATCTGGGTTTCATATTTTCTGCGAGTTAAGGGGCGAGTTTGATTGGGATGTACCAGACTTTTGGACCCAGGATTTTTGTTAGGGATTTGTTGATTTTTATTGAGATTTGAGATTCATGCTTTGTGCTAGGTTGTTTTGGATCTTACCGATTGCTGCTTAAATGCCTTAGGGTGAATTCTATTGAGACTTAAGGGTTGATACCTGGATTTGATTCCGTCTCAAGTCATTCAATTGATATTTCTGAAAAAATTAGCATTTTCTTAGCTCTACTTTGATTGAGGGTGGGGTGATGCCTCGTCTCCCTTCCACTTTTGCATCGCTTTGAATCTGATGAAGTTTAAGTTTGGTACGTATTGTAAAATTCCTTCAAAACTTCATTTACTTTTGAAAAATTCCCTTGAAACAACTAGTAATTTACGCATAATTAAACTAAGAATTAATACTCAAAACGATGTACAAAAAAATCTCAAATTCGGCAATAAAATGTTCAAACCCAAGGAAATGTTTTTCTTTTTTCCAATACAACTAGAAGAATGAATACTTGCAAAGTAACATTGTTCATCCATAAGAACTACTATGGACAATAAATTCGCCATAATTTTATAGTGTTGCGATATTGTCCACTTAGAGGGTTTATTTTTATTTTTATTTTATTTTATTTTTATAGTATAAATCCTCATTGGTTTCACCATAAACACTTCATACAATTGGAGATAGTTATCCCATTTATACTCATTATTTTTGCACGAAGGACTATCAAGCCTCCCTTCAAGTCGTCATCTACCACCATTTTTTTTAAAAATATAAAAACAACAACTTTCATTGATAAAAAATGAAAGAATACAAGGGCATAAAAAAAAAAGTGACCCTTCTCCCCATGAATAACCTCACAAAAGAAGGGGCTCCCTCTACAAAAAGATGGTAAAATAACACCTATAGAATAGTTACAAAAAAAGTCTTTGAAATTGAGGCCCTCAAAGAAATATGAAAACAAATGGGGGACCAAATCTCACTAGGGTCCCCATCCACACCTCTAAAAAACTCTACTATTCCGCTCGTCCCACAAAACCAAGAAAATAGCACACACCGTTGCAAGCCATAAAGAGTGACCCTTCTCCCCACGAATTGGATTGAGAAGGAACTCCTCGATCCTATCACGAACATCTATGTGATGAGCAACCATGATGCCAAACGTTTGGTAGAAAGAATCCTAAACTGAACTTGCAAATTCACAACGCCAAAGAATATGGTCTAGGTCTTCCTCTGTCTTCTGTCAAAGAATACAACAAAAAAGACCAACGGGCGAGGAAAACTTCCTCTTGAGCCAATCTGTTGTGTTAGTACGATCAACGACCTTATAAAACTTGCCAAGTAAAGAACCTCACTTTCCTAGGGATCGTAATCCTCCAGAGCATCGGAAAAATCAACAAATTTAGGGGGGAAGGATTAACCAAACTACGAAAGAAAGACTTACACAAGAACCCCTCCAAAAGATTGGGGCTCCAAACCCTGACGTCCCTTCTTCCACACCTAAATGGGTGGGCCGGTGGCCCTCAAGTAAGGAAAGTAGAAGGACCACATCTGTTGCTTTGCGACATAACCCGAAAGAAAAAGAACAAAAGCTCTCAGACCATAAAAGAAAGTCAACAACAAAACAATGAACAAAAGAAGGGAGCTCTTCCAAAATATTCTTCCTCAAGTTCCAATGTGTACCTTTAACCCTTTGGCAGCCACTTGAAAGGATGGGGCCATATTTACTAACCATAATCTTATGCCAAAGAGAACTGGGCTTAGAGGAGAAATGCTATAGCTGTTTGGCTAATAAAGCTTTGTTATGAGGCCCTCCCCCCACCCTCAAAAAAAAAAAAAGAAGCCTCCTGATAACCTCCTGATAACCTCCCATCTAATCAAGTGCGTGCCCCTCTCTTTCCCTTCTTCAACCCCTTCTCAAATCATGCCTCAACATCTCCAAACTCTTACAAAAGCTTGCATAGGGCTCTAAAAAGGAAGCCAACTCATATTCTCTAGAGCACAATGCCTGACTAGTAGAGCTCAATCATGGATCTCCACATGACTATGTCGTTGAAGCTCATCACCATCCACTTGTTAAGTTCCTAATGATTTGATCAACACGGTTAAGTTTGGTGCATGTCTTTGGTACCACTTGTTAAGGATGACGAATCTTTCTATATATATACTTTTGAAAAGGATACTAAACTTTTCATTATGAGAATGAAAAGAGGCTGATGCTCCATAATACAACAACAAACCTTTCTTTAATTCTACAACTTTATAATATTGCCCACTTTGGCAACAAGCCTTCATAGTTTTACTTTTGGTTTTACCCAGTCAGCCTTATGTCAATGGAGACAGTTTTTCTTACTTATACCCCTACAATCTTCTACTTACCTGGCCGATATGAAGACTCTGGTCACACTCCCAACAAAAATTGTCAAAATTAGTTACATATCTTTGTGGAAATGGAAGCTTAACTAAGTGAAGGTATTAATCTTAGCATTTAAAGTTTAGGGTTTAATTTGATAAAAGTAAAAGTTAAAAATTCAATTTGATTCATTTAGCTAAGAATAGGTGATAAAAGTAGACCTTTTCTATTTGACTGTTGCTAAAAGTGGTTATTTGAGGACTTGATTTGTGGACATAATTGTCGAGCAGTGGTTTTAGATGCTTTTACTCACCATCAGACAATTTCTTGGTCTTAACTTATACGTGCATCCATTTAGTTTTCTGGGCAAATTAAATTTAGTCAAGCAGATCATTTGAATTTCCTTTACTTGTTTATTTATTTATGTTTGCATGGTATCATGTTCTCTCATTAAACTACTGCAAAAGGATCTTTAGAATGGGCTCCATGTGATCTCAATTTCATATTCATGTTTAGACTTGAGTTTTTAAGATTAACAACCGTAACCAAGGACATTATTGCTTGAAAAAGAAAAAAAGGGATGGAAAAAACGTAACTGAGGTCATTGGTCTACATTACATGTAAAGGAAAGTGCACGTAGCTTCTTCGTACTTTGAAGGTTTGTTTACGGGATTGATAGATAGTTTAAAAGCATAGTTATCACTGCTTCCATCTGTTCCCATCTTTTCCATTTGCTCAAAGGAAGTGAGCGAGTTGACCACATGACACGTTAAGCTGAATCCAAGTATTACATTTAAAAGAAGAGTGTCTCATGGTTTCTTATATATCCCTTTGTCCATTTTGTCCATTTGGTTGGGGGAGATGGTGAAGATGATGTCATGCTTTTTCATTCAACCCTTTGTTTCTTCCTACGTATGGTTGGTTTAATAAGTTTAGATTACTATTCTATTGCATACTTTGAAGTTCACAATGAGGACATAAAGCATGTACAAGGCATTGGCCTGAATATATAGTATATATTTTACTTACCTTTGCCATCTCTTGTAGGGCGCTGAAAGAAGAAAAATATGCAGCCCGGCGAGCAATATTGCCTGTGCTTCAAGCTGAGGAAGATGAAAGGTAAAATGGACGATTTTTTGGGTTGGCTGTCCTCAACCTTCCAGTAAATTGGTTGAAACTATTGGCTCCTTTTAACTGTATCTGTTTTCTCACTTTCTAGATTTGTCAAAGAGTGGAAGAGTTACCTCGAATATGAGGCTGAAGTTATGAAGGATGTGCCTGGTTGGAAAGTTGGTGAAAGTGTCTACAACTCTGGAAAATGGATGCCTCCAGCAACTGGCGAGCTACGACCCGAAGTCTGGTGATTTTGTTTCAAACAGACTCATTTGTGGTTGACATGTAGTCTGAGTTTGTATGATTGCGACTTATCCTCATATGCGTTTCTTGATTTGCTGGTTCATGGCCCTCCTTATGAAAATAAAAGAAGCATGTCGAAATTTCTTCAAATGTTTTGCAAATACTACTGCTAAAACTGTCTTCTCTACTCAGTAAACATCTCCTTTTACCCTTGTATCACACTAAAAGGTTGGGACTTGGAATTAGACATGAATCATCTTCATTTT

mRNA sequence

TTTCCCTCTGTACTCTACTTCAGCCTTTCCTTCGTTTCTTTCAGTTCCTTTCGTCTTCGGAACCTCCCAATTCCCAAATCCCATTTCTCCACTACACCTAGCTCTTGCTTGATTCGTCTATTTGATCGTCGGCAAAGCTCTCTGAGATGACGGAGGCCGCGATTCGGAAGAAGCCTGGCATGGCCAGCGTCAAAGACATGCCGATCCTCCAAGACGGGCCACCGCCGGGTGGATTCGCTCCGGTTCGCTACGCTCGCCGGATTCCCACCAAAGGCCCTAGCGCCATGGCCATTTTCCTTACTGCTTTTGGTGCATTCTCTTGGGGGATGTATCAGGTCGGCAAGGGCAACAAGATCCGAAGGGCGCTGAAAGAAGAAAAATATGCAGCCCGGCGAGCAATATTGCCTGTGCTTCAAGCTGAGGAAGATGAAAGATTTGTCAAAGAGTGGAAGAGTTACCTCGAATATGAGGCTGAAGTTATGAAGGATGTGCCTGGTTGGAAAGTTGGTGAAAGTGTCTACAACTCTGGAAAATGGATGCCTCCAGCAACTGGCGAGCTACGACCCGAAGTCTGGTGATTTTGTTTCAAACAGACTCATTTGTGGTTGACATGTAGTCTGAGTTTGTATGATTGCGACTTATCCTCATATGCGTTTCTTGATTTGCTGGTTCATGGCCCTCCTTATGAAAATAAAAGAAGCATGTCGAAATTTCTTCAAATGTTTTGCAAATACTACTGCTAAAACTGTCTTCTCTACTCAGTAAACATCTCCTTTTACCCTTGTATCACACTAAAAGGTTGGGACTTGGAATTAGACATGAATCATCTTCATTTT

Coding sequence (CDS)

ATGACGGAGGCCGCGATTCGGAAGAAGCCTGGCATGGCCAGCGTCAAAGACATGCCGATCCTCCAAGACGGGCCACCGCCGGGTGGATTCGCTCCGGTTCGCTACGCTCGCCGGATTCCCACCAAAGGCCCTAGCGCCATGGCCATTTTCCTTACTGCTTTTGGTGCATTCTCTTGGGGGATGTATCAGGTCGGCAAGGGCAACAAGATCCGAAGGGCGCTGAAAGAAGAAAAATATGCAGCCCGGCGAGCAATATTGCCTGTGCTTCAAGCTGAGGAAGATGAAAGATTTGTCAAAGAGTGGAAGAGTTACCTCGAATATGAGGCTGAAGTTATGAAGGATGTGCCTGGTTGGAAAGTTGGTGAAAGTGTCTACAACTCTGGAAAATGGATGCCTCCAGCAACTGGCGAGCTACGACCCGAAGTCTGGTGA

Protein sequence

MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWGMYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKVGESVYNSGKWMPPATGELRPEVW
Homology
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BLAST of CmUC06G115470 vs. NCBI nr
Match: XP_004147172.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Cucumis sativus] >KGN61547.1 hypothetical protein Csa_006591 [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 2.6e-76
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSGKWMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of CmUC06G115470 vs. NCBI nr
Match: XP_022959289.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Cucurbita moschata] >XP_023549201.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Cucurbita pepo subsp. pepo] >XP_038876329.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Benincasa hispida] >KAG6574882.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013454.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.3 bits (752), Expect = 5.8e-76
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSGKWMPPATGELRPEVW
Sbjct: 121 GENVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of CmUC06G115470 vs. NCBI nr
Match: XP_023000560.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Cucurbita maxima] >KAG7026135.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.3 bits (752), Expect = 5.8e-76
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKY+ARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYSARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSGKWMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of CmUC06G115470 vs. NCBI nr
Match: XP_008460702.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Cucumis melo])

HSP 1 Score: 293.1 bits (749), Expect = 1.3e-75
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEAAIRKKPGMASVKDMPILQDGPPPGGF PVRYARRIPTKGPSAMAIFLTAFGAFSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFHPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSGKWMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of CmUC06G115470 vs. NCBI nr
Match: XP_023514672.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.1 bits (749), Expect = 1.3e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKY+ARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYSARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSGKWMPPATGELRPEVW
Sbjct: 121 GENVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of CmUC06G115470 vs. ExPASy Swiss-Prot
Match: O49313 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Arabidopsis thaliana OX=3702 GN=At2g33220 PE=2 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.0e-71
Identity = 127/143 (88.81%), Postives = 135/143 (94.41%), Query Frame = 0 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMAIFLT  GAF+WG
Sbjct: 1   MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKYAARRAILP+LQAEEDERFV EWK YLEYEA+VMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSG+WMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143

[Close]
BLAST of CmUC06G115470 vs. ExPASy Swiss-Prot
Match: Q8RWA7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A OS=Arabidopsis thaliana OX=3702 GN=MEE4 PE=1 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 1.9e-69
Identity = 123/143 (86.01%), Postives = 132/143 (92.31%), Query Frame = 0 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IR KPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMA+FL   GAF+WG
Sbjct: 1   MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKYAARR ILP+LQAEEDERFV EWK YLEYEA+VMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRTILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSG+WMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143

[Close]
BLAST of CmUC06G115470 vs. ExPASy Swiss-Prot
Match: Q95KV7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Bos taurus OX=9913 GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 114.8 bits (286), Expect = 8.2e-25
Identity = 55/119 (46.22%), Postives = 80/119 (67.23%), Query Frame = 0 

Query: 20  ILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWGMYQVGKGNKIRRALKEEKY 79
           + QD PP GG+ P+ Y R +P +G S  ++F    GA  +G + + K N+ RR L+ E +
Sbjct: 6   VKQDMPPVGGYGPIDYKRNLPRRGLSGYSMFAVGIGALLFGYWSMMKWNRERRRLQIEDF 65

Query: 80  AARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKVGESVYNSGKWMPPATGEL 139
            AR A++P+LQAE+D R ++  +  LE EA VMKDVPGWKVGESV+++ +W+ P  GEL
Sbjct: 66  EARIALMPLLQAEKDRRVLQMLRENLEEEATVMKDVPGWKVGESVFHTTRWVTPMMGEL 124

[Close]
BLAST of CmUC06G115470 vs. ExPASy Swiss-Prot
Match: Q0MQ89 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla gorilla OX=9595 GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-24
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 0 

Query: 20  ILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWGMYQVGKGNKIRRALKEEKY 79
           + QD PPPGG+ P+ Y R +P +G S  ++     G   +G + + K N+ RR L+ E +
Sbjct: 6   VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDF 65

Query: 80  AARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKVGESVYNSGKWMPPATGEL 139
            AR A+LP+LQAE D R ++  +  LE EA +MKDVP WKVGESV+++ +W+PP  GEL
Sbjct: 66  EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124

[Close]
BLAST of CmUC06G115470 vs. ExPASy Swiss-Prot
Match: Q9P0J0 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens OX=9606 GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-24
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 0 

Query: 20  ILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWGMYQVGKGNKIRRALKEEKY 79
           + QD PPPGG+ P+ Y R +P +G S  ++     G   +G + + K N+ RR L+ E +
Sbjct: 6   VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDF 65

Query: 80  AARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKVGESVYNSGKWMPPATGEL 139
            AR A+LP+LQAE D R ++  +  LE EA +MKDVP WKVGESV+++ +W+PP  GEL
Sbjct: 66  EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124

[Close]
BLAST of CmUC06G115470 vs. ExPASy TrEMBL
Match: A0A0A0LLE8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G169710 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.3e-76
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSGKWMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of CmUC06G115470 vs. ExPASy TrEMBL
Match: A0A6J1KIP8 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Cucurbita maxima OX=3661 GN=LOC111494802 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.8e-76
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKY+ARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYSARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSGKWMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of CmUC06G115470 vs. ExPASy TrEMBL
Match: A0A6J1H7M2 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Cucurbita moschata OX=3662 GN=LOC111460318 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.8e-76
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSGKWMPPATGELRPEVW
Sbjct: 121 GENVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of CmUC06G115470 vs. ExPASy TrEMBL
Match: A0A1S3CD20 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Cucumis melo OX=3656 GN=LOC103499471 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 6.2e-76
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEAAIRKKPGMASVKDMPILQDGPPPGGF PVRYARRIPTKGPSAMAIFLTAFGAFSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFHPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSGKWMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of CmUC06G115470 vs. ExPASy TrEMBL
Match: A0A6J1CAH0 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Momordica charantia OX=3673 GN=LOC111009806 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 8.1e-76
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFG FSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGTFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSGKWMPPATGELRP+VW
Sbjct: 121 GESVYNSGKWMPPATGELRPDVW 143

[Close]
BLAST of CmUC06G115470 vs. TAIR 10
Match: AT2G33220.1 (GRIM-19 protein )

HSP 1 Score: 269.6 bits (688), Expect = 1.4e-72
Identity = 127/143 (88.81%), Postives = 135/143 (94.41%), Query Frame = 0 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMAIFLT  GAF+WG
Sbjct: 1   MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKYAARRAILP+LQAEEDERFV EWK YLEYEA+VMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSG+WMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143

[Close]
BLAST of CmUC06G115470 vs. TAIR 10
Match: AT1G04630.1 (GRIM-19 protein )

HSP 1 Score: 263.1 bits (671), Expect = 1.3e-70
Identity = 123/143 (86.01%), Postives = 132/143 (92.31%), Query Frame = 0 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IR KPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMA+FL   GAF+WG
Sbjct: 1   MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKYAARR ILP+LQAEEDERFV EWK YLEYEA+VMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRTILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSG+WMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143

The following BLAST results are available for this feature:
BLAST of CmUC06G115470 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147172.12.6e-76100.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Cucumis sativus... [more]
XP_022959289.15.8e-7699.30NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Cucurbita mosch... [more]
XP_023000560.15.8e-7699.30NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Cucurbita maxim... [more]
XP_008460702.11.3e-7599.30PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Cucu... [more]
XP_023514672.11.3e-7598.60NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B-like [Cucurbita ... [more]
BLAST of CmUC06G115470 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O493132.0e-7188.81NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Arabidopsis t... [more]
Q8RWA71.9e-6986.01NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A OS=Arabidopsis t... [more]
Q95KV78.2e-2546.22NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Bos taurus OX=9... [more]
Q0MQ891.8e-2445.38NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla... [more]
Q9P0J01.8e-2445.38NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens OX... [more]
BLAST of CmUC06G115470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLE81.3e-76100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G169710 PE=3 SV=1[more]
A0A6J1KIP82.8e-7699.30NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Cucurbita max... [more]
A0A6J1H7M22.8e-7699.30NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Cucurbita mos... [more]
A0A1S3CD206.2e-7699.30NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Cucumis melo ... [more]
A0A6J1CAH08.1e-7698.60NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Momordica cha... [more]
BLAST of CmUC06G115470 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G33220.11.4e-7288.81GRIM-19 protein [more]
AT1G04630.11.3e-7086.01GRIM-19 protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009346GRIM-19PFAMPF06212GRIM-19coord: 20..138
e-value: 2.3E-42
score: 144.1
IPR009346GRIM-19PANTHERPTHR12966NADH DEHYDROGENASE UBIQUINONE 1 ALPHA SUBCOMPLEX SUBUNIT 13coord: 14..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC06G115470.1CmUC06G115470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
cellular_component GO:0005747 mitochondrial respiratory chain complex I
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity