CmUC06G115180 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G115180
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Ribonuclease H
Location	CmU531Chr06: 8351392 .. 8356166 (-)
RNA-Seq Expression	CmUC06G115180
Synteny	CmUC06G115180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGTCACGAAAACATCAGCACTTCCTTATGTTGAAGCAGTAGAAGAAGCTTTTGAGTGTTCTTACAGATCATTTGAAGTGGCTAATGCTACTATCTTTCCGACTGAAGGTTTGGATATTGGTCATTATATGTCTCGTACATCCCTAATGGTTGCAAAGATGATGATAAGGAGTGGTTACCAGATACATGGAGGTTTGGGGAAGAACAATCAAGGAAATTCAAAGGTGATTTCTCTTCCTAAGGCTAAGGAAAGGTTTGGATTGGGGTACGAGCCAACAACTTACGAATGGAAAAAATTCCGAGCAGAGAAGAAGGAAAAAAGAAATGCACGTCTTGAAAAACGTGAGGTTGAACAAGGTAGAATGCACATACCTAATCTATATGAAACTTTCAAGCCAGGAGAACTGCTTTTCAACGACAAGCAGTCAAAGGAATACACCAAAGAATTTGAAGCTTCAATTGCAGTTATCTCTGAAAACACTCATTCATCTTGTCAATTGGTTTATCCTTGCTCACCAGAATTTCAGTTGAACAATTGGGAGGTCAAGAAGATACCAAGCGTCATCAAAGGATCGCCAAAGTAATGATTTTGTTTTGTATCTTATGGCTATGCCTAAGGCCACAGGGATTTCTTTATAATAAGGGCATTTTCTAACGTTTTCAACATAAGAAGTTTCGCTTTCAATGTCTGGTAGCAATATGTACCTTTTCCTTTTTAAGAAATGAACAGATGATTGAATCTCTTTTTATCCCAATCACTGTGTTTATTTCCATTTTGCTCCAAAGCATGTTATTATTTATCACTTCTTTTCGCCTCCTCTACCTTTTACCAATACAATTTAGAGTCGATAACAGGGATGCTGGGGACGAAAACAACATCAATGTTGGTGTTAATTTCGAAGTTCCAATTTGCAATCTTGAGCAAAGTGCAAAAGACGAATGCGATATATCACCCAAATTACTAAGGATGATAGACCAAGAAGAAAAGGAGACTGTATCCTATCAAGAGCCTTTGGAAGTTGTTAATTTGGGGACGCTAAAAGAACCGAAAGAAGTACGAATTGGCATTTTGGCCTCAGGGCAGGATCGTTCAGATCTTATAGCCTTGCTTCATGAGTATAAGGACATATTTGCATGGTCCTACCAAGATATGCCAGGTTTAGATACAGAGATTGTGACGCATCGACTACCATTTAAGCCTGAGTGTAAACCCATACGACAAAAACTTCGCAAGATGAAACCTGAAATGCTAATCAAGATTAAGGAGGAGGTTAAGAAGCAATTCGATGCAGGATTCTTAGCAGTGGCTAACTACCCAGAATCGGTCGCAAATATTGTCCCAGTTCCAAAGAAAGACGGAAAGGTCAGAATGTGTGTTGACTATAGGGATCTAAATCGTGCAAGTCCCAAAGACAATTGTCCCCTTCCTCATATTAACGTACTAGTAGATAATACTGCAGGGTATTCTACTTTTTCGTTTATGGACGGGTTTTCGAGATATAATCAAATCAAGATGGCCCCTAAGGATCGAGAGAAGACAACATTCATCACCTTATAGGGAACATTTTGCTATAAAGTCATGCCTTTCGGTTTAAAAAATGCAGGAGCAACGTACCAGAGAGCTATGGTTACATTATTCCATGACTTAATGCACAAAGAAATCGAAGTTTATGTTGATGATATGATAGCAAAATCTAGACCCGGAGAAAAGCATGTGGCTACCCTTTGCAAGCTTTTTGAGCAACTGCGAAAGTTCCAACTAAAGTTGAACCCGGCAAAATGCATATTTGGAGTATCTTCTGGCAAATTGTTGGGTTTTGTTGTCAGTCAGGAGGGTATCAAAGTCGACCCAGACAAGATCAAGGCGATAGTAGATTTAAAGCCACCAAAGACCCAAAAGGAGGTTAGAAGTTTCTTGGGGAGACTAAATTACATCGCGCGGTTTATTTCGCACCTGACTCAAACATGTGAGCCGATACTAAGACTCCTCCGCAAGAGTGAGATATGTCACTGGAACGAGGATTGCCAAAAGGCCTTTGATAAAATCAGAAATTATTTGCAAAGCCCTCCAATACTTGTCCCACCAACTCCAGGACGACCGTTAATCTTATATTTAACGGTAAGGGAAGAATCCATGGGTTGTGTGTTGGAGCAGCATGACTCTACAGGAAGGAAAGAGCAAGCTGTTTATTATTTGAGCAAGAAGTTCACAAGTTACGAGTTGAAATACTCATTGTTAGAAAAAACATGTTGCGCCTTAGCGTGGACAGCTCAAAGATTGAGACAGTATATGTTGTATTACACAACATGGCTTATCTCAAAAATGGATCCTATAAAGTACATTTTTGAAAAGCCATCTTTGTCTGGTAGAATAGCCAAATGGCAGGTATTGCTATCAGAATATGATATTGTCTATGTCACCAAAAAGGCCATAAAAGGGAGTGCAATTGCCGATTGTCTAGCTGAATTACCTGTTGAAGACTACGAGCCAATGAAATTTGAATTTCCGGATGAAGACATCATGACGATATCCACATTGAATGAAACACAAGATCCTGAAACATGGACAATGTTGTTTGATGGAGCCACGAACGAAATGGGGCATGGTGTAGGGGCTACTTTGATATCTCCTGATGGGAAGTTGTATCCTTTAACTGCTAAATTATACTTCGATTGCACGAATAACATGGCTGAGTATGAAGCATGCAGTATGGGAATTCAGATGGCCTATGACATGAAGATAAAAAAACTGCAAGTTTTCGGGGATTCTCTTTTAGTAGTACATCAATTGAATGGGGAGTGGGAGACAAGAGACTCTAAATTGATTCCCTATAATAAGTATATCCGAGAATTGGCCCAAACTTTTGAGTCAATCACGTTCGAGCATGTCCCACGCGAAAATAACCAGGTTGCGGATGCATTGGCCACCTTGTCTGCCATGTTTAATGTGGCTCGCAATGAAGAAATTCAGCCTATAAGTATTGAGAAGCGTGAAGCACCAGCATATTGCCTAAGTGTTGAGCAGGAACCTGACGGGAAGCCTTGGTATCATGACATTAAGCACTACATCACATGTCGAGAATATCCGCTAGGAGCTTCTGAAAACAATAAGCGCACCATTAGAAAGTTGGCCATGAGTTTCTTTTTGAATGGAGATGTGTTGTACAAGAGAAATTACGATATGACTCTCTTGAGATGTGTTAATGCTTTGGAAGCAAAGAGAATTCTAGAAGAAGTTCACGAGGGAGTTTGTGGGACGCATACAAATGGACACATGATGTCAAGACAAGTTTTACGTGCCGGATATTATTGGTTGACTATGGAGTCAGATTGCATTAAGTATGCAAGAAAATGCCACAAATGCCAAATATATGCAGATAAAGTGCATGCTCCATCTTCCCCCCTACACGTGTTAACGGCCCCGTGGCCTTTCTCTATGTGGGGAATGGATGTAATTGGGCCCATTGAGCCAAAGGCGTCAAATGGTCATCGATTCATTTTGGTAGCCATAGACTACTTTACTAAGTGGGTGGAGGCTGCCTCGTACAAGAGTGTTACCAAGCAAGCCGTTGTCAAGTTCATAAGAAAGGACATTATATGTCGGTATGGCTTGCCTGAACGTATCATCATTGATAATGGGAGGAACTTAAATAACAAATTGATGGAGGAATTGTGTACCTAGTTCAAAATCAAACATTCTAACTCTACTCCTTATCGCCCTAAGATGAATGGAGCAGTGGAGGCGGCAAATAAAAATATCAAGAGAATTATCGAGAAAATGACGGTCACATATAAAGATTGGCATGAAATGTTACCGTTTGCGCTACACGGTTACCGAACATCAGTTCGTACATCGACTGAGGCAACGCCATTTTCTTTGGTGTATGGTTTGGAGGCTGTCTTGCCTATTGAGGTCGAGGTGCCATCCCTCAGGGTAATTCAAGAAGTAGAGTTAGAAGAAGCAGAATGGATTCAAACAAGGTATGAGCAGTTAAATCTGATAGAAGAAAGAAGAATGACAGCATTATGTAGAGGACAATTGTATCAAAAGAAGGTAGCGCGTGCGTACGACAGAAAAGTTCGACGTCGTTGTTTTCATGAAGGAGATTTGATGTTGAAAAGGATCTTGCCATCTCAGAAGGATCATAGAGGAAAGTGGACCCCTAATTATGAGGGACCATATGTGGTAAAAAAGGCATTCACTAGAGGAGCTTTGATTTTGACAAATATGGATGGGACCGATTTGCCCAATCCGTTAAGTGTAGATTACGTGAAGAAGTACTATGCATAGAAGAAGGGTGGACTTCCAATCTTGTACTTGATTTGTCCAATCTTTCGTCCTTTTGGAAGATCTTTGAGTATGTTTTCATGGCTCAAATATAGTGAGACACAATGGACCTTTTTCAAAATTTAACTAATATTACTTATGAACATAAACGAGCTATTTCGTATGCTTTCAGCCTTTTTGAATTTATAAGAAAAATTAAATAATGGTATGACTATGCATCTGTAGTGAATGTGTTCATGCATAAGTAACGTTTGTCTGTATTCTCATTTGAGCAACTTGGAGTTTTGTCATGAGGCGCTTGTTTATCCCTGGCCTTTGACATCCTTTGCTGCAGTGGTGCTTGTTTATCCCTGGCCCCCAGCCTTTATTATGCTGTGATGGTGCTTGTTTATTGTTGGCCTCCAGTTTCTTTTTGTTTGTCATGAGGCGCTTGTTTATCCTTGGCCCTTGACACCTTTTGTTGCGGTAGAACTTGCTCATTAG

mRNA sequence

ATGTTTGTCACGAAAACATCAGCACTTCCTTATGTTGAAGCAGTAGAAGAAGCTTTTGAGTGTTCTTACAGATCATTTGAAGTGGCTAATGCTACTATCTTTCCGACTGAAGGTTTGGATATTGGTCATTATATGTCTCGTACATCCCTAATGGTTGCAAAGATGATGATAAGGAGTGGTTACCAGATACATGGAGGTTTGGGGAAGAACAATCAAGGAAATTCAAAGGTGATTTCTCTTCCTAAGGCTAAGGAAAGGTTTGGATTGGGGTACGAGCCAACAACTTACGAATGGAAAAAATTCCGAGCAGAGAAGAAGGAAAAAAGAAATGCACGTCTTGAAAAACGTGAGGTTGAACAAGGTAGAATGCACATACCTAATCTATATGAAACTTTCAAGCCAGGAGAACTGCTTTTCAACGACAAGCAGTCAAAGGAATACACCAAAGAATTTGAAGCTTCAATTGCAGTTATCTCTGAAAACACTCATTCATCTTGTCAATTGGTTTATCCTTGCTCACCAGAATTTCAGTTGAACAATTGGGAGGTCAAGAAGATACCAAGCGTCATCAAAGGATCGCCAAAAGTCGATAACAGGGATGCTGGGGACGAAAACAACATCAATGTTGGTGTTAATTTCGAAGTTCCAATTTGCAATCTTGAGCAAAGTGCAAAAGACGAATGCGATATATCACCCAAATTACTAAGGATGATAGACCAAGAAGAAAAGGAGACTGTATCCTATCAAGAGCCTTTGGAAGTTTATATCCGAGAATTGGCCCAAACTTTTGAGTCAATCACGTTCGAGCATGTCCCACGCGAAAATAACCAGGTTGCGGATGCATTGGCCACCTTGTCTGCCATGTTTAATGTGGCTCGCAATGAAGAAATTCAGCCTATAAGTATTGAGAAGCGTGAAGCACCAGCATATTGCCTAAGTGTTGAGCAGGAACCTGACGGGAAGCCTTGGTATCATGACATTAAGCACTACATCACATGTCGAGAATATCCGCTAGGAGCTTCTGAAAACAATAAGCGCACCATTAGAAAGTTGGCCATGAGTTTCTTTTTGAATGGAGATGTGTTGTACAAGAGAAATTACGATATGACTCTCTTGAGATGTGTTAATGCTTTGGAAGCAAAGAGAATTCTAGAAGAAGTTCACGAGGGATTTCTTTTTGTTTGTCATGAGGCGCTTGTTTATCCTTGGCCCTTGACACCTTTTGTTGCGGTAGAACTTGCTCATTAG

Coding sequence (CDS)

ATGTTTGTCACGAAAACATCAGCACTTCCTTATGTTGAAGCAGTAGAAGAAGCTTTTGAGTGTTCTTACAGATCATTTGAAGTGGCTAATGCTACTATCTTTCCGACTGAAGGTTTGGATATTGGTCATTATATGTCTCGTACATCCCTAATGGTTGCAAAGATGATGATAAGGAGTGGTTACCAGATACATGGAGGTTTGGGGAAGAACAATCAAGGAAATTCAAAGGTGATTTCTCTTCCTAAGGCTAAGGAAAGGTTTGGATTGGGGTACGAGCCAACAACTTACGAATGGAAAAAATTCCGAGCAGAGAAGAAGGAAAAAAGAAATGCACGTCTTGAAAAACGTGAGGTTGAACAAGGTAGAATGCACATACCTAATCTATATGAAACTTTCAAGCCAGGAGAACTGCTTTTCAACGACAAGCAGTCAAAGGAATACACCAAAGAATTTGAAGCTTCAATTGCAGTTATCTCTGAAAACACTCATTCATCTTGTCAATTGGTTTATCCTTGCTCACCAGAATTTCAGTTGAACAATTGGGAGGTCAAGAAGATACCAAGCGTCATCAAAGGATCGCCAAAAGTCGATAACAGGGATGCTGGGGACGAAAACAACATCAATGTTGGTGTTAATTTCGAAGTTCCAATTTGCAATCTTGAGCAAAGTGCAAAAGACGAATGCGATATATCACCCAAATTACTAAGGATGATAGACCAAGAAGAAAAGGAGACTGTATCCTATCAAGAGCCTTTGGAAGTTTATATCCGAGAATTGGCCCAAACTTTTGAGTCAATCACGTTCGAGCATGTCCCACGCGAAAATAACCAGGTTGCGGATGCATTGGCCACCTTGTCTGCCATGTTTAATGTGGCTCGCAATGAAGAAATTCAGCCTATAAGTATTGAGAAGCGTGAAGCACCAGCATATTGCCTAAGTGTTGAGCAGGAACCTGACGGGAAGCCTTGGTATCATGACATTAAGCACTACATCACATGTCGAGAATATCCGCTAGGAGCTTCTGAAAACAATAAGCGCACCATTAGAAAGTTGGCCATGAGTTTCTTTTTGAATGGAGATGTGTTGTACAAGAGAAATTACGATATGACTCTCTTGAGATGTGTTAATGCTTTGGAAGCAAAGAGAATTCTAGAAGAAGTTCACGAGGGATTTCTTTTTGTTTGTCATGAGGCGCTTGTTTATCCTTGGCCCTTGACACCTTTTGTTGCGGTAGAACTTGCTCATTAG

Protein sequence

MFVTKTSALPYVEAVEEAFECSYRSFEVANATIFPTEGLDIGHYMSRTSLMVAKMMIRSGYQIHGGLGKNNQGNSKVISLPKAKERFGLGYEPTTYEWKKFRAEKKEKRNARLEKREVEQGRMHIPNLYETFKPGELLFNDKQSKEYTKEFEASIAVISENTHSSCQLVYPCSPEFQLNNWEVKKIPSVIKGSPKVDNRDAGDENNINVGVNFEVPICNLEQSAKDECDISPKLLRMIDQEEKETVSYQEPLEVYIRELAQTFESITFEHVPRENNQVADALATLSAMFNVARNEEIQPISIEKREAPAYCLSVEQEPDGKPWYHDIKHYITCREYPLGASENNKRTIRKLAMSFFLNGDVLYKRNYDMTLLRCVNALEAKRILEEVHEGFLFVCHEALVYPWPLTPFVAVELAH

Homology

[Close]

BLAST of CmUC06G115180 vs. NCBI nr
Match: KAA0033221.1 (uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 296.2 bits (757), Expect = 4.4e-76
Identity = 159/255 (62.35%), Postives = 198/255 (77.65%), Query Frame = 0


Query: 1    MFVTKTSALPYVEAVEEAFECSYRSFEVANATIFPTEGLDIGHYMSRTSLMVAKMMIRSG 60
            MFVTKTS LPYVEA EEA ECSYRSFE ANATIFPTEGL +  Y+S+TSLM+AK MI+SG
Sbjct: 1403 MFVTKTSVLPYVEATEEALECSYRSFEFANATIFPTEGLSMDRYVSKTSLMIAKTMIKSG 1462

Query: 61   YQIHGGLGKNNQGNSKVISLPKAKERFGLGYEPTTYEWKKFRAEKKEKRNARLEKREVEQ 120
            +Q+H GLGK+NQG+S+VISLPKAKE+FGLGY+P T E +K RA+KKEKR+A L   E+++
Sbjct: 1463 FQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSECEKVRAKKKEKRSALLMGCEMKE 1522

Query: 121  GRMHIPNLYETFKPGELLFNDKQSKEYTKEFEASIAVISENTHSSCQLVYPCSPEFQLNN 180
             R+ IP+L ETFK GELLF+  Q K + ++ E  IAV+SENT     LV+ C P F+LNN
Sbjct: 1523 ERISIPHLSETFKLGELLFDTHQRKRHNEDSEILIAVVSENTSLPHPLVHKCPPGFELNN 1582

Query: 181  WEVKKIPSVIKGSPKVDNRDAGDENNINVGVNFEVPICNLEQS-AKDECDISPKLLRMID 240
            WE+KK   V KGS K + R  GD   ++  V+FEVPICNLEQ+  + E DISP+LLR+I+
Sbjct: 1583 WEIKKTLKVTKGSQK-NTRVEGD---VDDAVDFEVPICNLEQNIGEGESDISPELLRLIE 1642

Query: 241  QEEKETVSYQEPLEV 255
            QEEK+T+SYQE L V
Sbjct: 1643 QEEKKTMSYQETLNV 1653

[Close]

BLAST of CmUC06G115180 vs. NCBI nr
Match: KAA0043020.1 (uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 294.3 bits (752), Expect = 1.7e-75
Identity = 156/255 (61.18%), Postives = 197/255 (77.25%), Query Frame = 0


Query: 1   MFVTKTSALPYVEAVEEAFECSYRSFEVANATIFPTEGLDIGHYMSRTSLMVAKMMIRSG 60
           MFVTK S LPYVEA EEA ECSYRSFE+ANATIFP EGL +  Y+S+TSLM+AK MI+S 
Sbjct: 317 MFVTKISTLPYVEATEEALECSYRSFEIANATIFPIEGLSMDRYVSKTSLMIAKTMIKSC 376

Query: 61  YQIHGGLGKNNQGNSKVISLPKAKERFGLGYEPTTYEWKKFRAEKKEKRNARLEKREVEQ 120
           +Q+H GLGK+NQG+SKVISLPKAKE+FGLGY+P   EW+K RA+KKEKR+  L   E+++
Sbjct: 377 FQMHKGLGKDNQGDSKVISLPKAKEKFGLGYKPAASEWEKVRAKKKEKRSTLLVGCEMKE 436

Query: 121 GRMHIPNLYETFKPGELLFNDKQSKEYTKEFEASIAVISENTHSSCQLVYPCSPEFQLNN 180
            R+ IP+L+ETFKP ELLF+  Q K   ++ E SIAV+SENT  S  LV+ C P F+LNN
Sbjct: 437 ERISIPHLFETFKPEELLFDTNQRKRRNEDSEISIAVVSENTSLSHPLVHQCPPGFELNN 496

Query: 181 WEVKKIPSVIKGSPKVDNRDAGDENNINVGVNFEVPICNLEQSAK-DECDISPKLLRMID 240
           WE+KK   V KGS K   R  GD +++   V+F+VPICNLEQ+ +  E DISP+LLR+I+
Sbjct: 497 WEIKKTLEVTKGSQK-STRVEGDVDDV---VDFKVPICNLEQNIEVGEFDISPELLRLIE 556

Query: 241 QEEKETVSYQEPLEV 255
           QEEK+T+ YQE L+V
Sbjct: 557 QEEKKTMLYQETLKV 567

[Close]

BLAST of CmUC06G115180 vs. NCBI nr
Match: KAA0065293.1 (uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 276.9 bits (707), Expect = 2.8e-70
Identity = 141/235 (60.00%), Postives = 184/235 (78.30%), Query Frame = 0


Query: 21   CSYRSFEVANATIFPTEGLDIGHYMSRTSLMVAKMMIRSGYQIHGGLGKNNQGNSKVISL 80
            CSYRSFE+ANATIFPTEGL +  Y+S+TSLM+AK MI+SG+Q+H GLGK+NQG+S+VISL
Sbjct: 934  CSYRSFEIANATIFPTEGLSMDRYVSKTSLMIAKTMIKSGFQMHKGLGKDNQGDSEVISL 993

Query: 81   PKAKERFGLGYEPTTYEWKKFRAEKKEKRNARLEKREVEQGRMHIPNLYETFKPGELLFN 140
            PKAKE+FGLGY+P T EW+K RA+ KEKR+A L   E+++ R+ IP+L ETFK GELLF+
Sbjct: 994  PKAKEKFGLGYKPVTSEWEKVRAKNKEKRSALLMGCEMKEERISIPHLSETFKLGELLFD 1053

Query: 141  DKQSKEYTKEFEASIAVISENTHSSCQLVYPCSPEFQLNNWEVKKIPSVIKGSPKVDNRD 200
              Q K + ++ E SI V+SENT     LV+ C P F+LNNWE+KK   V KGS K+ NR+
Sbjct: 1054 THQRKRHNEDSEISIEVVSENTSLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQKIHNRN 1113

Query: 201  AGDENNINVGVNFEVPICNLEQS-AKDECDISPKLLRMIDQEEKETVSYQEPLEV 255
               E +++  V+FEVPICNLEQ+  + E DISP+LLR+I+QEEK+T+ YQE L+V
Sbjct: 1114 TRVEGDVDDTVDFEVPICNLEQNIGEGESDISPELLRLIEQEEKKTMPYQETLKV 1168

[Close]

BLAST of CmUC06G115180 vs. NCBI nr
Match: KAA0061241.1 (uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 249.2 bits (635), Expect = 6.2e-62
Identity = 126/195 (64.62%), Postives = 154/195 (78.97%), Query Frame = 0


Query: 1    MFVTKTSALPYVEAVEEAFECSYRSFEVANATIFPTEGLDIGHYMSRTSLMVAKMMIRSG 60
            MFVTKTS LPYVEA EEA ECSYRSFE+ANATIFPTEGL +  Y+S+TSLM+AK MI+SG
Sbjct: 945  MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMDRYVSKTSLMIAKTMIKSG 1004

Query: 61   YQIHGGLGKNNQGNSKVISLPKAKERFGLGYEPTTYEWKKFRAEKKEKRNARLEKREVEQ 120
            +Q+H GLGK+NQG+S+VISLPKAKE FGLGY+P T EW+K RA+KKEKR+A L   E+++
Sbjct: 1005 FQMHKGLGKDNQGDSEVISLPKAKENFGLGYKPVTSEWEKVRAKKKEKRSALLMGCEMKE 1064

Query: 121  GRMHIPNLYETFKPGELLFNDKQSKEYTKEFEASIAVISENTHSSCQLVYPCSPEFQLNN 180
             R+ IP+L ETFK GELLF+  Q K + ++ E SIAV+SEN      LV+ C P F+LNN
Sbjct: 1065 ERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNN 1124

Query: 181  WEVKKIPSVIKGSPK 196
            WE+KK   V KGS K
Sbjct: 1125 WEIKKSLKVTKGSQK 1139

[Close]

BLAST of CmUC06G115180 vs. NCBI nr
Match: KAA0049671.1 (uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa] >TYK12201.1 uncharacterized protein E5676_scaffold106G001520 [Cucumis melo var. makuwa])

HSP 1 Score: 242.7 bits (618), Expect = 5.8e-60
Identity = 209/752 (27.79%), Postives = 261/752 (34.71%), Query Frame = 0


Query: 1   MFVTKTSALPYVEAVEEAFECSYRSFEVANATIFPTEGLDIGHYMSRTSLMVAKMMIRSG 60
           MFVTKTSALPYVEA+EEA E                                        
Sbjct: 252 MFVTKTSALPYVEAIEEALE---------------------------------------- 311

Query: 61  YQIHGGLGKNNQGNSKVISLPKAKERFGLGYEPTTYEWKKFRAEKKEKRNARLEKREVEQ 120
                                 +KE+FGLGY+P   EW+K RA+KKEKR+  L  RE+++
Sbjct: 312 ----------------------SKEKFGLGYKPIASEWEKVRAKKKEKRSVLLMGREMKE 371

Query: 121 GRMHIPNLYETFKPGELLFNDKQSKEYTKEFEASIAVISENTHSSCQLVYPCSPEFQLNN 180
            R++IP+L+ETFKPGELLF+  Q K   K+ +  IAVISENT     LV+ CSP F+LNN
Sbjct: 372 ERINIPHLFETFKPGELLFDTNQRKRCNKDSKILIAVISENTILHHPLVHQCSPRFELNN 431

Query: 181 WEVKKIPSVIKGSPKVDNRDAGDENNINVGVNFEVPICNLEQSAKD-ECDISPKLLRMID 240
           WE+KK   V              E +++  ++FEVPICNLEQ+ ++ E D SP+LLR+I+
Sbjct: 432 WEIKKTLEV------TGFESTRVEGDVDDAIDFEVPICNLEQNIEEGEYDTSPELLRLIE 491

Query: 241 QEEKETVSYQEPLEV--------------------------------------------- 300
           QEEK+T+ YQE L+V                                             
Sbjct: 492 QEEKKTMPYQETLKVINLGTLEEVKKVRIGTLASKQDQLDLVTLLHEFKDICAWSYQDMP 551

Query: 301 ------------------------------------------------------------ 360
                                                                       
Sbjct: 552 GLDTEIIKEEVKKQFDAGFLAVVKYLIWVANIVPVPKKDRKVRMCVDYRDLNRASLKDNF 611

Query: 361 ------------------------------------------------------------ 391
                                                                       
Sbjct: 612 PLPHIDVLVDNTAGFSTFSFMDGFSGCNQIKMAPEDQEKTTFITLWETFCYKVMPFGLKN 671

[Close]

BLAST of CmUC06G115180 vs. ExPASy TrEMBL
Match: A0A5A7SUT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00100 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.1e-76
Identity = 159/255 (62.35%), Postives = 198/255 (77.65%), Query Frame = 0


Query: 1    MFVTKTSALPYVEAVEEAFECSYRSFEVANATIFPTEGLDIGHYMSRTSLMVAKMMIRSG 60
            MFVTKTS LPYVEA EEA ECSYRSFE ANATIFPTEGL +  Y+S+TSLM+AK MI+SG
Sbjct: 1403 MFVTKTSVLPYVEATEEALECSYRSFEFANATIFPTEGLSMDRYVSKTSLMIAKTMIKSG 1462

Query: 61   YQIHGGLGKNNQGNSKVISLPKAKERFGLGYEPTTYEWKKFRAEKKEKRNARLEKREVEQ 120
            +Q+H GLGK+NQG+S+VISLPKAKE+FGLGY+P T E +K RA+KKEKR+A L   E+++
Sbjct: 1463 FQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSECEKVRAKKKEKRSALLMGCEMKE 1522

Query: 121  GRMHIPNLYETFKPGELLFNDKQSKEYTKEFEASIAVISENTHSSCQLVYPCSPEFQLNN 180
             R+ IP+L ETFK GELLF+  Q K + ++ E  IAV+SENT     LV+ C P F+LNN
Sbjct: 1523 ERISIPHLSETFKLGELLFDTHQRKRHNEDSEILIAVVSENTSLPHPLVHKCPPGFELNN 1582

Query: 181  WEVKKIPSVIKGSPKVDNRDAGDENNINVGVNFEVPICNLEQS-AKDECDISPKLLRMID 240
            WE+KK   V KGS K + R  GD   ++  V+FEVPICNLEQ+  + E DISP+LLR+I+
Sbjct: 1583 WEIKKTLKVTKGSQK-NTRVEGD---VDDAVDFEVPICNLEQNIGEGESDISPELLRLIE 1642

Query: 241  QEEKETVSYQEPLEV 255
            QEEK+T+SYQE L V
Sbjct: 1643 QEEKKTMSYQETLNV 1653

[Close]

BLAST of CmUC06G115180 vs. ExPASy TrEMBL
Match: A0A5A7TI68 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00990 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 8.1e-76
Identity = 156/255 (61.18%), Postives = 197/255 (77.25%), Query Frame = 0


Query: 1   MFVTKTSALPYVEAVEEAFECSYRSFEVANATIFPTEGLDIGHYMSRTSLMVAKMMIRSG 60
           MFVTK S LPYVEA EEA ECSYRSFE+ANATIFP EGL +  Y+S+TSLM+AK MI+S 
Sbjct: 317 MFVTKISTLPYVEATEEALECSYRSFEIANATIFPIEGLSMDRYVSKTSLMIAKTMIKSC 376

Query: 61  YQIHGGLGKNNQGNSKVISLPKAKERFGLGYEPTTYEWKKFRAEKKEKRNARLEKREVEQ 120
           +Q+H GLGK+NQG+SKVISLPKAKE+FGLGY+P   EW+K RA+KKEKR+  L   E+++
Sbjct: 377 FQMHKGLGKDNQGDSKVISLPKAKEKFGLGYKPAASEWEKVRAKKKEKRSTLLVGCEMKE 436

Query: 121 GRMHIPNLYETFKPGELLFNDKQSKEYTKEFEASIAVISENTHSSCQLVYPCSPEFQLNN 180
            R+ IP+L+ETFKP ELLF+  Q K   ++ E SIAV+SENT  S  LV+ C P F+LNN
Sbjct: 437 ERISIPHLFETFKPEELLFDTNQRKRRNEDSEISIAVVSENTSLSHPLVHQCPPGFELNN 496

Query: 181 WEVKKIPSVIKGSPKVDNRDAGDENNINVGVNFEVPICNLEQSAK-DECDISPKLLRMID 240
           WE+KK   V KGS K   R  GD +++   V+F+VPICNLEQ+ +  E DISP+LLR+I+
Sbjct: 497 WEIKKTLEVTKGSQK-STRVEGDVDDV---VDFKVPICNLEQNIEVGEFDISPELLRLIE 556

Query: 241 QEEKETVSYQEPLEV 255
           QEEK+T+ YQE L+V
Sbjct: 557 QEEKKTMLYQETLKV 567

[Close]

BLAST of CmUC06G115180 vs. ExPASy TrEMBL
Match: A0A5A7VAU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00060 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.3e-70
Identity = 141/235 (60.00%), Postives = 184/235 (78.30%), Query Frame = 0


Query: 21   CSYRSFEVANATIFPTEGLDIGHYMSRTSLMVAKMMIRSGYQIHGGLGKNNQGNSKVISL 80
            CSYRSFE+ANATIFPTEGL +  Y+S+TSLM+AK MI+SG+Q+H GLGK+NQG+S+VISL
Sbjct: 934  CSYRSFEIANATIFPTEGLSMDRYVSKTSLMIAKTMIKSGFQMHKGLGKDNQGDSEVISL 993

Query: 81   PKAKERFGLGYEPTTYEWKKFRAEKKEKRNARLEKREVEQGRMHIPNLYETFKPGELLFN 140
            PKAKE+FGLGY+P T EW+K RA+ KEKR+A L   E+++ R+ IP+L ETFK GELLF+
Sbjct: 994  PKAKEKFGLGYKPVTSEWEKVRAKNKEKRSALLMGCEMKEERISIPHLSETFKLGELLFD 1053

Query: 141  DKQSKEYTKEFEASIAVISENTHSSCQLVYPCSPEFQLNNWEVKKIPSVIKGSPKVDNRD 200
              Q K + ++ E SI V+SENT     LV+ C P F+LNNWE+KK   V KGS K+ NR+
Sbjct: 1054 THQRKRHNEDSEISIEVVSENTSLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQKIHNRN 1113

Query: 201  AGDENNINVGVNFEVPICNLEQS-AKDECDISPKLLRMIDQEEKETVSYQEPLEV 255
               E +++  V+FEVPICNLEQ+  + E DISP+LLR+I+QEEK+T+ YQE L+V
Sbjct: 1114 TRVEGDVDDTVDFEVPICNLEQNIGEGESDISPELLRLIEQEEKKTMPYQETLKV 1168

[Close]

BLAST of CmUC06G115180 vs. ExPASy TrEMBL
Match: A0A5A7V681 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00760 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.0e-62
Identity = 126/195 (64.62%), Postives = 154/195 (78.97%), Query Frame = 0


Query: 1    MFVTKTSALPYVEAVEEAFECSYRSFEVANATIFPTEGLDIGHYMSRTSLMVAKMMIRSG 60
            MFVTKTS LPYVEA EEA ECSYRSFE+ANATIFPTEGL +  Y+S+TSLM+AK MI+SG
Sbjct: 945  MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMDRYVSKTSLMIAKTMIKSG 1004

Query: 61   YQIHGGLGKNNQGNSKVISLPKAKERFGLGYEPTTYEWKKFRAEKKEKRNARLEKREVEQ 120
            +Q+H GLGK+NQG+S+VISLPKAKE FGLGY+P T EW+K RA+KKEKR+A L   E+++
Sbjct: 1005 FQMHKGLGKDNQGDSEVISLPKAKENFGLGYKPVTSEWEKVRAKKKEKRSALLMGCEMKE 1064

Query: 121  GRMHIPNLYETFKPGELLFNDKQSKEYTKEFEASIAVISENTHSSCQLVYPCSPEFQLNN 180
             R+ IP+L ETFK GELLF+  Q K + ++ E SIAV+SEN      LV+ C P F+LNN
Sbjct: 1065 ERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNN 1124

Query: 181  WEVKKIPSVIKGSPK 196
            WE+KK   V KGS K
Sbjct: 1125 WEIKKSLKVTKGSQK 1139

[Close]

BLAST of CmUC06G115180 vs. ExPASy TrEMBL
Match: A0A5A7U7X5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001520 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.8e-60
Identity = 209/752 (27.79%), Postives = 261/752 (34.71%), Query Frame = 0


Query: 1   MFVTKTSALPYVEAVEEAFECSYRSFEVANATIFPTEGLDIGHYMSRTSLMVAKMMIRSG 60
           MFVTKTSALPYVEA+EEA E                                        
Sbjct: 252 MFVTKTSALPYVEAIEEALE---------------------------------------- 311

Query: 61  YQIHGGLGKNNQGNSKVISLPKAKERFGLGYEPTTYEWKKFRAEKKEKRNARLEKREVEQ 120
                                 +KE+FGLGY+P   EW+K RA+KKEKR+  L  RE+++
Sbjct: 312 ----------------------SKEKFGLGYKPIASEWEKVRAKKKEKRSVLLMGREMKE 371

Query: 121 GRMHIPNLYETFKPGELLFNDKQSKEYTKEFEASIAVISENTHSSCQLVYPCSPEFQLNN 180
            R++IP+L+ETFKPGELLF+  Q K   K+ +  IAVISENT     LV+ CSP F+LNN
Sbjct: 372 ERINIPHLFETFKPGELLFDTNQRKRCNKDSKILIAVISENTILHHPLVHQCSPRFELNN 431

Query: 181 WEVKKIPSVIKGSPKVDNRDAGDENNINVGVNFEVPICNLEQSAKD-ECDISPKLLRMID 240
           WE+KK   V              E +++  ++FEVPICNLEQ+ ++ E D SP+LLR+I+
Sbjct: 432 WEIKKTLEV------TGFESTRVEGDVDDAIDFEVPICNLEQNIEEGEYDTSPELLRLIE 491

Query: 241 QEEKETVSYQEPLEV--------------------------------------------- 300
           QEEK+T+ YQE L+V                                             
Sbjct: 492 QEEKKTMPYQETLKVINLGTLEEVKKVRIGTLASKQDQLDLVTLLHEFKDICAWSYQDMP 551

Query: 301 ------------------------------------------------------------ 360
                                                                       
Sbjct: 552 GLDTEIIKEEVKKQFDAGFLAVVKYLIWVANIVPVPKKDRKVRMCVDYRDLNRASLKDNF 611

Query: 361 ------------------------------------------------------------ 391
                                                                       
Sbjct: 612 PLPHIDVLVDNTAGFSTFSFMDGFSGCNQIKMAPEDQEKTTFITLWETFCYKVMPFGLKN 671

The following BLAST results are available for this feature:

BLAST of CmUC06G115180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033221.1	4.4e-76	62.35	uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]	[more]
KAA0043020.1	1.7e-75	61.18	uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa]	[more]
KAA0065293.1	2.8e-70	60.00	uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]	[more]
KAA0061241.1	6.2e-62	64.62	uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]	[more]
KAA0049671.1	5.8e-60	27.79	uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa] >TYK12...	[more]

BLAST of CmUC06G115180 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC06G115180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SUT0	2.1e-76	62.35	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84...	[more]
A0A5A7TI68	8.1e-76	61.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VAU5	1.3e-70	60.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V681	3.0e-62	64.62	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7U7X5	2.8e-60	27.79	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00152...	[more]

BLAST of CmUC06G115180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 233..284 e-value: 5.7E-8 score: 32.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 231..291 e-value: 5.0E-6 score: 28.5
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 255..399
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 3..254
None	No IPR available	PANTHER	PTHR24559:SF322	RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE), RIBONUCLEASE H-LIKE PROTEIN	coord: 255..399
None	No IPR available	PANTHER	PTHR24559:SF322	RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE), RIBONUCLEASE H-LIKE PROTEIN	coord: 3..254
IPR000467	G-patch domain	PROSITE	PS50174	G_PATCH	coord: 48..94 score: 9.107767

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G115180.1	CmUC06G115180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0003676	nucleic acid binding