CmUC06G112350 (gene) Watermelon (USVL531) v1

Overview
NameCmUC06G112350
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Description30S ribosomal protein S1, chloroplastic
LocationCmU531Chr06: 4743324 .. 4746669 (-)
RNA-Seq ExpressionCmUC06G112350
SyntenyCmUC06G112350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTCATCGGCGCATCAACCTTGTGGGTTGAACTCGAGGTATTCGTATCCTCCTCTTTCTTCATCGCGGTTTTCAGCTTCGAGTTGGAACTGGAACCGCTTTTCTCCCAACCAACGGCCTAAAGTGCTTCCATTAGTTTCAGCTGCAGCTTCTTCCCCTTCTCCCATTTCCAATGCGCAGACCAAAGGGCGCCTTAAACTCAAGCAACTCTTCAAGGAAGCTTATGAACGCTGCTGTACTGCCCCCATGGATGGCATCTCCTTCACTCTTGAAGACTTCCATGCCGCTCTTGCAAATTACGACTTTGTTACTGAACTCGGAACCAAGGTTAGATTTCCAGAACAATTCTCATTTATTGTTATCTGAACGAACACCTTCACAGCTTTACAAAATCACTTCATCTTTATTTTTTTGTAAAAGCGACTAGGAAATAATGGAATTGCGTGTTTTGTTCTTTTTGAAGGGTAATGCTTGCCATGTAGGAGGTTCTGGTTATTGAGCACATTCTTTTGTTGAATTTTGGGCATAGAACGAAAAAAGTAGTCCTACGTGAGTGGATTTGCGAAGAATTTTATTTCTGGAACATTTTCTTTCTTTTGGTGGTTGGGATAGTTGGAATTTGCAGCGGTTAGAATTTGAATTTGCATTGGTATTGCTTCATCAAGTAAACTCACAATGTAGCATCGTGAGTTTGAGAAACAGAAAACTATTCAATCAAAGAAAGAACAGCCTAGGGGCAGAGAGGCGAGAAGCCCCTCCCCTTAAAGAACTAGCGTATCAGAGCCTTCCAATTATGGAGGATTTGAGTAAGACTGTAATTACAAAAAAGATCCTTTTCCGCAAGAGTCCATAAAGAAATAATTTGTTCAATATTGGAAAAATCAACAAAAGGGCAAGACTTATCTTCAAAGCTTGAGAGGGGATGTTAGATCATATTATTCAAATTCGATTTAGTTTAAATTTGCAATTTGAATTAGGTTTGTTTAGTATGTGAATTGTGTTATTAGATTTATTTTTTAGAACCATAAATAGGTTTTTAGCGTTGTATTTCATAATGCACTCTTTATTCAATGGAACTCTAGCTGTCGTTTGTGTTATCTTCCTCTTTTCTCTTCCCTAAATTTAGAAGTAATAATATCTAGATACATCAAATGCCACGAATGGTTCCCAATCTCAAGAAACATTGGGCCTTACGCGTATGAAGTTCGAGGTTTTCAATAGTTCCACCAAGCACGAGCTGACTACAGAAAGAATTGAGCTACACGTTCCTGAAAATTTGTGACTTACAGCTGCAACTATTTAACTACCCAGAGTTTTTATAGCCACCCCAAAAGAACCAGCTTAACAGAAATCTGTGGCATTACTTTTTGGCTCCAATATCAGATAGCTAACAGAAATCTGTGCCATTTCTTTCTTTAATATTTGCACATGCATCTCGTGGGCTAATGGATAGTGGTTAACTTCTCAATAAGTTCAAATTATTGTTTTCTCAGGTTAAGGGTACTGTATTCTGTACCGATGCTAATGGGGCACTAGTTGATACTACTGCAAAGGGAACTGCATACTTGCCCACTCAAGAGGCATGCATTCTTAAAATAAGACATGTAGAAGAAGTAGGCATATATCCTGGTTTAGAAGAGGAGTTCGTAATTATTGCTGAACAGGAAGATGGCGATGGCTTAATTCTGAGCTTGAGAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTCCAAGCTGAGGATATTGTTATCAAGGGTAAGGTGGGTTCTGCAAGATATATCATGCTTTTATAATTTTGTTTGTTCCTTATATCGTTGCGCAAGATCCTTCAATCTTGTTATGCTAGTAGTATTCATGTGACCATTGCCTTTCATCCTTTTGTTGCCTTCTTAGCTTCATAACCTAGTTGCAGGGCAGAGGCACTCCCACATTATTGTTTTATCATCTTTTTTACTCATTACAAATGTGTTTTTATTTAATATTGATCATCTTTGTCATTCACTGAATAATTTAAGATTTCACACTTGTTTTTACCTGTTGCTACTTTTACTATCTCATTTTTATTTTCCTTTTCTAAGAGAAAGATCTTGAAATGCAGGTTGTTGGTGCAACCAAAGGGGGATTAGTTGTTCTTGTGGAAGGTCTTAGAGGCTTTGTTCCTTTCTCTCAGATATCAGCAGTTAGTTCACTTGACTGACATTCTTTTTGCTGACTTTTGATGCTCTAGCTGACTTAACTTTTAAAACTTCTATTATTATTTACTTTGCGGTCATACTGATAGCCTACACATTTATATGTTTTTGTGATTATATGATTATCTTGACCATCACAGACCACTACTTTTGCTCATATTCTTCATCAGTTTTAAGCTCACATACTGTGCCATATATCTCTTTTTCTTGTCAATTTATCAGAAATCAACTGGAGAGGAGCTTCTTAATAAAGAGCTACGTCTGAAGTTTGTGGAGGTTGATGAGAAACTATCTCGGCTAGTCTTAAGTAATTCCAAGGCCATTGTCAGTAGTCAGGCAGAGCTAAGAATTGGTTCAGTAGTTACTGGAACCGTGCAGTTTCTGAAACCATATGGAGCCTTTATTGACATCGGAGGAATTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGCAACCGTTCTTCAACCAGGAGATATGCTTAAGGTATTTCATTGTCATTTGTCAATGAGAGCTTGAAGGAGGTCTTCATCATTGTGCAGCCTTGAACATGTTGAAATTAATTTTTGAGGTTGCAGGTCATGATTTTGAGCTATGACTGCAACAAAGGCCGTGTTAGTCTTTCTACCAAGAAATTGGAACCTACTCCTGGAGACATGATTCACAATCCAAAGCTTGTCTTTGAGAAGGTATTTCTTTTGCCCTTTACTCTTCTTACTATTATGACGTGCATTGCTTGTATTTTCAGAAGGTGTTTGCACTTTTCAATTCTTATTGTTAGTGTGCATATTAGGTTGCCTAGTCTTTTCCCCCCCTTATATTTAACCGCTAGCATGACTTGAACCTTTATGTAATATTGTGTAGGAGAGCTCCAAAATTTATGGTTTCACTTCCATCCATTCAATTTCACCTCATATAAATTATTGAACTAGAGTAGATTTTTAATTTTTTTTAATTTCTTGTATCTATTCTAGGCGGACGAGATGGCTCAGATATTCAGGCAAAGAATAGCTCAAGCAGAAACAATGGCTCGTGCAGGCCTTCTCGGATTTCAGCTTGAGGTACTTATTTATTTGGCTTGGATTTTTCAACTTAATTCATTGAAAATGTTGGAGCGTGATTAA

mRNA sequence

ATGAGCTCATCGGCGCATCAACCTTGTGGGTTGAACTCGAGGTATTCGTATCCTCCTCTTTCTTCATCGCGGTTTTCAGCTTCGAGTTGGAACTGGAACCGCTTTTCTCCCAACCAACGGCCTAAAGTGCTTCCATTAGTTTCAGCTGCAGCTTCTTCCCCTTCTCCCATTTCCAATGCGCAGACCAAAGGGCGCCTTAAACTCAAGCAACTCTTCAAGGAAGCTTATGAACGCTGCTGTACTGCCCCCATGGATGGCATCTCCTTCACTCTTGAAGACTTCCATGCCGCTCTTGCAAATTACGACTTTGTTACTGAACTCGGAACCAAGGTTAAGGGTACTGTATTCTGTACCGATGCTAATGGGGCACTAGTTGATACTACTGCAAAGGGAACTGCATACTTGCCCACTCAAGAGGCATGCATTCTTAAAATAAGACATGTAGAAGAAGTAGGCATATATCCTGGTTTAGAAGAGGAGTTCGTAATTATTGCTGAACAGGAAGATGGCGATGGCTTAATTCTGAGCTTGAGAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTCCAAGCTGAGGATATTGTTATCAAGGGTAAGGTTGTTGGTGCAACCAAAGGGGGATTAGTTGTTCTTGTGGAAGGTCTTAGAGGCTTTGTTCCTTTCTCTCAGATATCAGCAAAATCAACTGGAGAGGAGCTTCTTAATAAAGAGCTACGTCTGAAGTTTGTGGAGGTTGATGAGAAACTATCTCGGCTAGTCTTAAGTAATTCCAAGGCCATTGTCAGTAGTCAGGCAGAGCTAAGAATTGGTTCAGTAGTTACTGGAACCGTGCAGTTTCTGAAACCATATGGAGCCTTTATTGACATCGGAGGAATTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGCAACCGTTCTTCAACCAGGAGATATGCTTAAGGTCATGATTTTGAGCTATGACTGCAACAAAGGCCGTGTTAGTCTTTCTACCAAGAAATTGGAACCTACTCCTGGAGACATGATTCACAATCCAAAGCTTGTCTTTGAGAAGGCGGACGAGATGGCTCAGATATTCAGGCAAAGAATAGCTCAAGCAGAAACAATGGCTCGTGCAGGCCTTCTCGGATTTCAGCTTGAGGTACTTATTTATTTGGCTTGGATTTTTCAACTTAATTCATTGAAAATGTTGGAGCGTGATTAA

Coding sequence (CDS)

ATGAGCTCATCGGCGCATCAACCTTGTGGGTTGAACTCGAGGTATTCGTATCCTCCTCTTTCTTCATCGCGGTTTTCAGCTTCGAGTTGGAACTGGAACCGCTTTTCTCCCAACCAACGGCCTAAAGTGCTTCCATTAGTTTCAGCTGCAGCTTCTTCCCCTTCTCCCATTTCCAATGCGCAGACCAAAGGGCGCCTTAAACTCAAGCAACTCTTCAAGGAAGCTTATGAACGCTGCTGTACTGCCCCCATGGATGGCATCTCCTTCACTCTTGAAGACTTCCATGCCGCTCTTGCAAATTACGACTTTGTTACTGAACTCGGAACCAAGGTTAAGGGTACTGTATTCTGTACCGATGCTAATGGGGCACTAGTTGATACTACTGCAAAGGGAACTGCATACTTGCCCACTCAAGAGGCATGCATTCTTAAAATAAGACATGTAGAAGAAGTAGGCATATATCCTGGTTTAGAAGAGGAGTTCGTAATTATTGCTGAACAGGAAGATGGCGATGGCTTAATTCTGAGCTTGAGAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTCCAAGCTGAGGATATTGTTATCAAGGGTAAGGTTGTTGGTGCAACCAAAGGGGGATTAGTTGTTCTTGTGGAAGGTCTTAGAGGCTTTGTTCCTTTCTCTCAGATATCAGCAAAATCAACTGGAGAGGAGCTTCTTAATAAAGAGCTACGTCTGAAGTTTGTGGAGGTTGATGAGAAACTATCTCGGCTAGTCTTAAGTAATTCCAAGGCCATTGTCAGTAGTCAGGCAGAGCTAAGAATTGGTTCAGTAGTTACTGGAACCGTGCAGTTTCTGAAACCATATGGAGCCTTTATTGACATCGGAGGAATTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGCAACCGTTCTTCAACCAGGAGATATGCTTAAGGTCATGATTTTGAGCTATGACTGCAACAAAGGCCGTGTTAGTCTTTCTACCAAGAAATTGGAACCTACTCCTGGAGACATGATTCACAATCCAAAGCTTGTCTTTGAGAAGGCGGACGAGATGGCTCAGATATTCAGGCAAAGAATAGCTCAAGCAGAAACAATGGCTCGTGCAGGCCTTCTCGGATTTCAGCTTGAGGTACTTATTTATTTGGCTTGGATTTTTCAACTTAATTCATTGAAAATGTTGGAGCGTGATTAA

Protein sequence

MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNAQTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLRSVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQIFRQRIAQAETMARAGLLGFQLEVLIYLAWIFQLNSLKMLERD
Homology
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BLAST of CmUC06G112350 vs. NCBI nr
Match: XP_038906593.1 (30S ribosomal protein S1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 679.9 bits (1753), Expect = 1.4e-191
Identity = 355/390 (91.03%), Postives = 368/390 (94.36%), Query Frame = 0 

Query: 1   MSSSAHQP-CGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISN 60
           MSSSAHQP CGL SRYSY PLSS R SASSWNWNRF P +  K+LPLVSAAASSPSPISN
Sbjct: 1   MSSSAHQPCCGLKSRYSYSPLSSWRLSASSWNWNRFPPKEWRKLLPLVSAAASSPSPISN 60

Query: 61  AQTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTD 120
           AQTK RLKLKQLFKEAYERCCT+PMDG+SFTLEDFHAALA+YDFV+ELGTKVKGTVFCT+
Sbjct: 61  AQTKERLKLKQLFKEAYERCCTSPMDGVSFTLEDFHAALADYDFVSELGTKVKGTVFCTN 120

Query: 121 ANGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLRS 180
           ANGALVD T KGTAYLPTQEACILKI+HVEE GIYPGLEEEF+IIAEQEDGDGLILSLRS
Sbjct: 121 ANGALVD-TVKGTAYLPTQEACILKIKHVEEAGIYPGLEEEFIIIAEQEDGDGLILSLRS 180

Query: 181 VQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNK 240
           VQYGLAWERCRQLQAEDIVIKGKVVGATKGG+VVLVEGLRGFVPFSQISAKST EELLNK
Sbjct: 181 VQYGLAWERCRQLQAEDIVIKGKVVGATKGGVVVLVEGLRGFVPFSQISAKSTAEELLNK 240

Query: 241 ELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLL 300
           ELRLKFVEVDE+LSRL+LSNSKAIV SQAELRIGSVVTGTVQ LKPYGAFIDIGGINGLL
Sbjct: 241 ELRLKFVEVDEELSRLILSNSKAIV-SQAELRIGSVVTGTVQILKPYGAFIDIGGINGLL 300

Query: 301 HVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFE 360
           HVSQISQNHI DIATVLQPGD+LKVMILSYD NKGRVSLSTKKLEPTPGDMIHNPKLVFE
Sbjct: 301 HVSQISQNHILDIATVLQPGDVLKVMILSYDQNKGRVSLSTKKLEPTPGDMIHNPKLVFE 360

Query: 361 KADEMAQIFRQRIAQAETMARAGLLGFQLE 390
           KADEMAQ FRQRIAQAE MARAGLLG Q E
Sbjct: 361 KADEMAQTFRQRIAQAEAMARAGLLGCQPE 388

[Close]
BLAST of CmUC06G112350 vs. NCBI nr
Match: XP_023006590.1 (30S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 592.0 bits (1525), Expect = 3.8e-165
Identity = 318/394 (80.71%), Postives = 338/394 (85.79%), Query Frame = 0 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           MSS AHQ CGL S     PLSS+  S       RFSP         V +AA+SP+PISNA
Sbjct: 1   MSSLAHQLCGLRS----SPLSSTPISTR----KRFSP---------VVSAAASPTPISNA 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RLKLKQLFKEAYERCC  PMDG+SFTLEDFHA+LANYDFV+E+GTKVKGTVF TDA
Sbjct: 61  QTKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIA--EQEDGDGLILSLR 180
           NGALVDT+AKGTAYLPTQEACI  IRHVEE GIYPGLEEEFVII   EQED   LILSLR
Sbjct: 121 NGALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLR 180

Query: 181 SVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLN 240
           SVQYGLAWERCRQLQAED VIKGKVV   KGG+VVLVEGL+GFVPFSQISAKST EELLN
Sbjct: 181 SVQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLN 240

Query: 241 KELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGL 300
           KEL LKFVEVDEKLSRLVLSNSKAI SSQ+ELRIGSVVTG VQ LKPYGAFIDIGG+NGL
Sbjct: 241 KELLLKFVEVDEKLSRLVLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGL 300

Query: 301 LHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVF 360
           LHVSQISQNHISDIA VLQPGDMLKVMILSYD ++GR+SLSTKKLEP+PGDM+HNPKLVF
Sbjct: 301 LHVSQISQNHISDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVF 360

Query: 361 EKADEMAQIFRQRIAQAETMARAGLLGFQLEVLI 393
           EKADEMAQ FRQRIAQAE MARA LL FQ E+L+
Sbjct: 361 EKADEMAQTFRQRIAQAEAMARAELLEFQPELLL 377

[Close]
BLAST of CmUC06G112350 vs. NCBI nr
Match: XP_022958818.1 (30S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 590.9 bits (1522), Expect = 8.5e-165
Identity = 317/394 (80.46%), Postives = 337/394 (85.53%), Query Frame = 0 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           MSS AHQ CGL S     PLSS+  S       RFSP         V +AA+SP+PISNA
Sbjct: 1   MSSLAHQLCGLRS----SPLSSTPISTR----KRFSP---------VVSAAASPTPISNA 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RLKLKQLFKEAYERCC  PMDG+SFTLEDFHAALANYDFV+ELGTKVKGTVF TDA
Sbjct: 61  QTKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIA--EQEDGDGLILSLR 180
           NGALVDT+AKGTAYLPTQEACI  IRHVEE GIYPGLEEEFVII   EQED   LILSLR
Sbjct: 121 NGALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLR 180

Query: 181 SVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLN 240
           SVQYGLAWERCRQLQAED VIKGKVV   KGG+VVLVEGL+GFVPFSQISAKST EELLN
Sbjct: 181 SVQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLN 240

Query: 241 KELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGL 300
           KEL LKFVEVDEKL RL+LSNSKAIVSSQ+ELRIGSVVTG VQ LKPYGAF+DIGG+NGL
Sbjct: 241 KELLLKFVEVDEKLYRLILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGL 300

Query: 301 LHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVF 360
           LHVSQISQNHI DIA VLQPGDMLKVMILSYD ++GR+SLSTKKLEP+PGDM+HNPKLVF
Sbjct: 301 LHVSQISQNHIPDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVF 360

Query: 361 EKADEMAQIFRQRIAQAETMARAGLLGFQLEVLI 393
           EKADEMAQ FRQRIAQAE MARA LL FQ E+L+
Sbjct: 361 EKADEMAQTFRQRIAQAEAMARAELLEFQPELLL 377

[Close]
BLAST of CmUC06G112350 vs. NCBI nr
Match: XP_023006591.1 (30S ribosomal protein S1, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 589.7 bits (1519), Expect = 1.9e-164
Identity = 317/391 (81.07%), Postives = 335/391 (85.68%), Query Frame = 0 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           MSS AHQ CGL S     PLSS+  S       RFSP         V +AA+SP+PISNA
Sbjct: 1   MSSLAHQLCGLRS----SPLSSTPISTR----KRFSP---------VVSAAASPTPISNA 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RLKLKQLFKEAYERCC  PMDG+SFTLEDFHA+LANYDFV+E+GTKVKGTVF TDA
Sbjct: 61  QTKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIA--EQEDGDGLILSLR 180
           NGALVDT+AKGTAYLPTQEACI  IRHVEE GIYPGLEEEFVII   EQED   LILSLR
Sbjct: 121 NGALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLR 180

Query: 181 SVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLN 240
           SVQYGLAWERCRQLQAED VIKGKVV   KGG+VVLVEGL+GFVPFSQISAKST EELLN
Sbjct: 181 SVQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLN 240

Query: 241 KELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGL 300
           KEL LKFVEVDEKLSRLVLSNSKAI SSQ+ELRIGSVVTG VQ LKPYGAFIDIGG+NGL
Sbjct: 241 KELLLKFVEVDEKLSRLVLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGL 300

Query: 301 LHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVF 360
           LHVSQISQNHISDIA VLQPGDMLKVMILSYD ++GR+SLSTKKLEP+PGDM+HNPKLVF
Sbjct: 301 LHVSQISQNHISDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVF 360

Query: 361 EKADEMAQIFRQRIAQAETMARAGLLGFQLE 390
           EKADEMAQ FRQRIAQAE MARA LL FQ E
Sbjct: 361 EKADEMAQTFRQRIAQAEAMARAELLEFQPE 374

[Close]
BLAST of CmUC06G112350 vs. NCBI nr
Match: XP_022138847.1 (30S ribosomal protein S1, chloroplastic-like isoform X1 [Momordica charantia])

HSP 1 Score: 588.6 bits (1516), Expect = 4.2e-164
Identity = 309/383 (80.68%), Postives = 334/383 (87.21%), Query Frame = 0 

Query: 11  LNSRYSYPPLSSSRFSASSWNWNRF----SPNQRPKVLPLVSAAASSPSPISNAQTKGRL 70
           +NS     PLSS R S SS +W RF    S N + + LP+VS+AAS+ +PISNAQTK RL
Sbjct: 1   MNSLAHRVPLSSLRLSVSSSSWRRFSRKESHNHKFRALPVVSSAAST-TPISNAQTKERL 60

Query: 71  KLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVD 130
           KLKQLFKEAYERCCT PMDG+SFTLEDFHAAL+NYDFV+ELGTKVKGTVF TDA+GALVD
Sbjct: 61  KLKQLFKEAYERCCTTPMDGVSFTLEDFHAALSNYDFVSELGTKVKGTVFSTDASGALVD 120

Query: 131 TTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLRSVQYGLAW 190
           TTAKGTAYLP +EACILKIRHVEE GIYPGLEEEFVIIAE E    LILSLR +QYGLAW
Sbjct: 121 TTAKGTAYLPIEEACILKIRHVEEAGIYPGLEEEFVIIAEHETDGSLILSLRRLQYGLAW 180

Query: 191 ERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFV 250
           ERCRQLQAED+VIKGKVVGA KGG+ VLVEGLRGFVPFSQISAKST EELL+KELRLKFV
Sbjct: 181 ERCRQLQAEDVVIKGKVVGANKGGVFVLVEGLRGFVPFSQISAKSTAEELLDKELRLKFV 240

Query: 251 EVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQ 310
           EVDE+LSRL+LSN KAI +SQAELRIGSVVTGTVQ LK YGAFIDIGG+NGLLH+SQIS 
Sbjct: 241 EVDEELSRLILSNCKAIANSQAELRIGSVVTGTVQILKSYGAFIDIGGVNGLLHISQISH 300

Query: 311 NHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQ 370
           NHISD+ATVL+PGD LKVMILSYD  +GRVSLSTK LEPTPGDMIHNPKLVFEKADEMAQ
Sbjct: 301 NHISDMATVLRPGDTLKVMILSYDHERGRVSLSTKNLEPTPGDMIHNPKLVFEKADEMAQ 360

Query: 371 IFRQRIAQAETMARAGLLGFQLE 390
            FRQRIAQAE MAR  LL  Q E
Sbjct: 361 TFRQRIAQAEAMARVDLLRLQPE 382

[Close]
BLAST of CmUC06G112350 vs. ExPASy Swiss-Prot
Match: P29344 (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 1.7e-144
Identity = 268/374 (71.66%), Postives = 307/374 (82.09%), Query Frame = 0 

Query: 18  PPLSSSRFSASSWNWNRFSPNQ--RPKVLPLVSAAASSPSPISNAQTKGRLKLKQLFKEA 77
           PPLS+S  S        FSP    +P+  P+VSA A     +SNAQT+ R KLKQLF++A
Sbjct: 15  PPLSNSNLS------KPFSPKHTLKPRFSPIVSAVA-----VSNAQTRERQKLKQLFEDA 74

Query: 78  YERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVDTTAKGTAYL 137
           YERC  APM+G+SFT++DFH AL  YDF +E+G++VKGTVFCTDANGALVD TAK +AYL
Sbjct: 75  YERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDITAKSSAYL 134

Query: 138 PTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLRSVQYGLAWERCRQLQAE 197
           P  EACI +I++VEE GI PG+ EEFVII E E  D LILSLR +QY LAWERCRQLQAE
Sbjct: 135 PLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWERCRQLQAE 194

Query: 198 DIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFVEVDEKLSRL 257
           D+V+KGK+VGA KGG+V LVEGLRGFVPFSQIS+KS+ EELL KE+ LKFVEVDE+ SRL
Sbjct: 195 DVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVDEEQSRL 254

Query: 258 VLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQNHISDIATV 317
           V+SN KA+  SQA+L IGSVVTGTVQ LKPYGAFIDIGGINGLLHVSQIS + +SDIATV
Sbjct: 255 VMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATV 314

Query: 318 LQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQIFRQRIAQA 377
           LQPGD LKVMILS+D  +GRVSLSTKKLEPTPGDMI NPKLVFEKA+EMAQ FRQRIAQA
Sbjct: 315 LQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQA 374

Query: 378 ETMARAGLLGFQLE 390
           E MARA +L FQ E
Sbjct: 375 EAMARADMLRFQPE 377

[Close]
BLAST of CmUC06G112350 vs. ExPASy Swiss-Prot
Match: Q93VC7 (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 1.7e-136
Identity = 258/389 (66.32%), Postives = 309/389 (79.43%), Query Frame = 0 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           M+S A Q  GL      P  SSSR S  +     F  N+   V P + AA +    +S+ 
Sbjct: 1   MASLAQQFSGLRCS---PLSSSSRLSRRA--SKNFPQNKSASVSPTIVAAVA----MSSG 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RL+LK++F++AYERC T+PM+G++FT++DF AA+  YDF +E+GT+VKGTVF TDA
Sbjct: 61  QTKERLELKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLRSV 180
           NGALVD +AK +AYL  ++ACI +I+HVEE GI PG+ EEFVII E E  D L+LSLR++
Sbjct: 121 NGALVDISAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNI 180

Query: 181 QYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKE 240
           QY LAWERCRQLQAED+++K KV+GA KGGLV LVEGLRGFVPFSQIS+K+  EELL KE
Sbjct: 181 QYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKE 240

Query: 241 LRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLH 300
           + LKFVEVDE+ ++LVLSN KA+  SQA+L IGSVV G VQ LKPYGAFIDIGGINGLLH
Sbjct: 241 IPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLH 300

Query: 301 VSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEK 360
           VSQIS + +SDIATVLQPGD LKVMILS+D ++GRVSLSTKKLEPTPGDMI NPKLVFEK
Sbjct: 301 VSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEK 360

Query: 361 ADEMAQIFRQRIAQAETMARAGLLGFQLE 390
           A+EMAQ FRQRIAQAE MARA +L FQ E
Sbjct: 361 AEEMAQTFRQRIAQAEAMARADMLRFQPE 380

[Close]
BLAST of CmUC06G112350 vs. ExPASy Swiss-Prot
Match: P46228 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpsA PE=1 SV=4)

HSP 1 Score: 273.1 bits (697), Expect = 5.2e-72
Identity = 141/293 (48.12%), Postives = 196/293 (66.89%), Query Frame = 0 

Query: 83  PMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVDTTAKGTAYLPTQEACI 142
           P   I FT EDF A L  YD+    G  V GTVF  +  GAL+D  AK  A+LP QE  I
Sbjct: 7   PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSI 66

Query: 143 LKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLRSVQYGLAWERCRQLQAEDIVIKGK 202
            ++   EEV + P    EF I++++ +   L LS+R ++Y  AWER RQLQ ED  ++ +
Sbjct: 67  NRVESPEEV-LQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSE 126

Query: 203 VVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFVEVDEKLSRLVLSNSKA 262
           V    +GG +V +EGLRGF+P S IS +   E+L+ +EL LKF+EVDE  +RLVLS+ +A
Sbjct: 127 VFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRA 186

Query: 263 IVSSQA-ELRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQNHISDIATVLQPGDM 322
           +V  +   L +G VV G V+ +KPYGAFIDIGG++GLLH+S+IS +HI    +V    D 
Sbjct: 187 LVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDE 246

Query: 323 LKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQIFRQRIAQ 375
           +KVMI+  D  +GR+SLSTK+LEP PGDM+ NP++V+EKA+EMA  +R+++ Q
Sbjct: 247 VKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQ 298

[Close]
BLAST of CmUC06G112350 vs. ExPASy Swiss-Prot
Match: P73530 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rps1A PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 5.7e-71
Identity = 144/292 (49.32%), Postives = 198/292 (67.81%), Query Frame = 0 

Query: 87  ISFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVDTTAKGTAYLPTQEACILKIR 146
           I FTLEDF A L  YD+    G  V GTVF  ++ GAL+D  AK  AY+P QE  I ++ 
Sbjct: 10  IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVD 69

Query: 147 HVEEVGIYPGLEEEFVIIAEQEDGDGLILSLRSVQYGLAWERCRQLQAEDIVIKGKVVGA 206
             EEV + P    EF I+ ++ +   L LS+R ++Y  AWER RQLQAED  ++  V   
Sbjct: 70  DPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFAT 129

Query: 207 TKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFVEVDEKLSRLVLSNSKAIVSS 266
            +GG +V +EGLRGF+P S ISA+   E+L+ ++L LKF+EVDE+ +RLVLS+ +A+V  
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVER 189

Query: 267 QAE-LRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQNHISDIATVLQPGDMLKVM 326
           +   L +  VV G+V+ +KPYGAFIDIGG++GLLH+S+IS +HI    +V    D +KVM
Sbjct: 190 KMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVM 249

Query: 327 ILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQIFRQ-RIAQAE 377
           I+  D  +GR+SLSTK+LEP PG M+ +  LV E ADEMA+IFRQ R+A+A+
Sbjct: 250 IIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQKRLAEAQ 300

[Close]
BLAST of CmUC06G112350 vs. ExPASy Swiss-Prot
Match: P51345 (30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea OX=2787 GN=rps1 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.8e-40
Identity = 94/262 (35.88%), Postives = 153/262 (58.40%), Query Frame = 0 

Query: 88  SFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVDTTAKGTAYLPTQEACILKIRH 147
           SFT  +F A L  Y +   LG  V GT+F  + NG LVD     +AYLP QE     +  
Sbjct: 7   SFTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPVSAYLPIQE-----VSS 66

Query: 148 VEEVGIYPGLE----EEFVIIAEQEDGDGLILSLRSVQYGLAWERCRQLQAEDIVIKGKV 207
            +E+  +  L      EF ++    +   LILS+R ++Y  AW+R RQL AED ++  ++
Sbjct: 67  NQELNNFNSLNINDTREFFLLDYNVESRQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRI 126

Query: 208 VGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFVEVDEKLSRLVLSNSKAI 267
            G  KGG++V +EG+ GFVP S ++  S      NK ++LK + V+EK + L+LS+ +A+
Sbjct: 127 KGFNKGGMIVNLEGISGFVPNSHLNNFSKNTSSTNKFIKLKLLNVEEKSNNLILSHRRAL 186

Query: 268 VS-SQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQNHISDIATVLQPGDML 327
           ++ + + L +G+++ G +  + PYG FI  G + GL+H+S+I+   +  I +  + GD +
Sbjct: 187 IAQASSNLIVGNIIEGVINQITPYGLFIKAGNLKGLVHISEINVKQVERIPSQFKIGDTI 246

Query: 328 KVMILSYDCNKGRVSLSTKKLE 345
           K +I+  D  +GR+SLS K L+
Sbjct: 247 KAVIIHVDKKQGRLSLSMKHLK 263

[Close]
BLAST of CmUC06G112350 vs. ExPASy TrEMBL
Match: A0A6J1L0J3 (30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499271 PE=4 SV=1)

HSP 1 Score: 592.0 bits (1525), Expect = 1.9e-165
Identity = 318/394 (80.71%), Postives = 338/394 (85.79%), Query Frame = 0 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           MSS AHQ CGL S     PLSS+  S       RFSP         V +AA+SP+PISNA
Sbjct: 1   MSSLAHQLCGLRS----SPLSSTPISTR----KRFSP---------VVSAAASPTPISNA 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RLKLKQLFKEAYERCC  PMDG+SFTLEDFHA+LANYDFV+E+GTKVKGTVF TDA
Sbjct: 61  QTKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIA--EQEDGDGLILSLR 180
           NGALVDT+AKGTAYLPTQEACI  IRHVEE GIYPGLEEEFVII   EQED   LILSLR
Sbjct: 121 NGALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLR 180

Query: 181 SVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLN 240
           SVQYGLAWERCRQLQAED VIKGKVV   KGG+VVLVEGL+GFVPFSQISAKST EELLN
Sbjct: 181 SVQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLN 240

Query: 241 KELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGL 300
           KEL LKFVEVDEKLSRLVLSNSKAI SSQ+ELRIGSVVTG VQ LKPYGAFIDIGG+NGL
Sbjct: 241 KELLLKFVEVDEKLSRLVLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGL 300

Query: 301 LHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVF 360
           LHVSQISQNHISDIA VLQPGDMLKVMILSYD ++GR+SLSTKKLEP+PGDM+HNPKLVF
Sbjct: 301 LHVSQISQNHISDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVF 360

Query: 361 EKADEMAQIFRQRIAQAETMARAGLLGFQLEVLI 393
           EKADEMAQ FRQRIAQAE MARA LL FQ E+L+
Sbjct: 361 EKADEMAQTFRQRIAQAEAMARAELLEFQPELLL 377

[Close]
BLAST of CmUC06G112350 vs. ExPASy TrEMBL
Match: A0A6J1H453 (30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459974 PE=4 SV=1)

HSP 1 Score: 590.9 bits (1522), Expect = 4.1e-165
Identity = 317/394 (80.46%), Postives = 337/394 (85.53%), Query Frame = 0 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           MSS AHQ CGL S     PLSS+  S       RFSP         V +AA+SP+PISNA
Sbjct: 1   MSSLAHQLCGLRS----SPLSSTPISTR----KRFSP---------VVSAAASPTPISNA 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RLKLKQLFKEAYERCC  PMDG+SFTLEDFHAALANYDFV+ELGTKVKGTVF TDA
Sbjct: 61  QTKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIA--EQEDGDGLILSLR 180
           NGALVDT+AKGTAYLPTQEACI  IRHVEE GIYPGLEEEFVII   EQED   LILSLR
Sbjct: 121 NGALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLR 180

Query: 181 SVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLN 240
           SVQYGLAWERCRQLQAED VIKGKVV   KGG+VVLVEGL+GFVPFSQISAKST EELLN
Sbjct: 181 SVQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLN 240

Query: 241 KELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGL 300
           KEL LKFVEVDEKL RL+LSNSKAIVSSQ+ELRIGSVVTG VQ LKPYGAF+DIGG+NGL
Sbjct: 241 KELLLKFVEVDEKLYRLILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGL 300

Query: 301 LHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVF 360
           LHVSQISQNHI DIA VLQPGDMLKVMILSYD ++GR+SLSTKKLEP+PGDM+HNPKLVF
Sbjct: 301 LHVSQISQNHIPDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVF 360

Query: 361 EKADEMAQIFRQRIAQAETMARAGLLGFQLEVLI 393
           EKADEMAQ FRQRIAQAE MARA LL FQ E+L+
Sbjct: 361 EKADEMAQTFRQRIAQAEAMARAELLEFQPELLL 377

[Close]
BLAST of CmUC06G112350 vs. ExPASy TrEMBL
Match: A0A6J1KY62 (30S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499271 PE=4 SV=1)

HSP 1 Score: 589.7 bits (1519), Expect = 9.2e-165
Identity = 317/391 (81.07%), Postives = 335/391 (85.68%), Query Frame = 0 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           MSS AHQ CGL S     PLSS+  S       RFSP         V +AA+SP+PISNA
Sbjct: 1   MSSLAHQLCGLRS----SPLSSTPISTR----KRFSP---------VVSAAASPTPISNA 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RLKLKQLFKEAYERCC  PMDG+SFTLEDFHA+LANYDFV+E+GTKVKGTVF TDA
Sbjct: 61  QTKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIA--EQEDGDGLILSLR 180
           NGALVDT+AKGTAYLPTQEACI  IRHVEE GIYPGLEEEFVII   EQED   LILSLR
Sbjct: 121 NGALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLR 180

Query: 181 SVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLN 240
           SVQYGLAWERCRQLQAED VIKGKVV   KGG+VVLVEGL+GFVPFSQISAKST EELLN
Sbjct: 181 SVQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLN 240

Query: 241 KELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGL 300
           KEL LKFVEVDEKLSRLVLSNSKAI SSQ+ELRIGSVVTG VQ LKPYGAFIDIGG+NGL
Sbjct: 241 KELLLKFVEVDEKLSRLVLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGL 300

Query: 301 LHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVF 360
           LHVSQISQNHISDIA VLQPGDMLKVMILSYD ++GR+SLSTKKLEP+PGDM+HNPKLVF
Sbjct: 301 LHVSQISQNHISDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVF 360

Query: 361 EKADEMAQIFRQRIAQAETMARAGLLGFQLE 390
           EKADEMAQ FRQRIAQAE MARA LL FQ E
Sbjct: 361 EKADEMAQTFRQRIAQAEAMARAELLEFQPE 374

[Close]
BLAST of CmUC06G112350 vs. ExPASy TrEMBL
Match: A0A6J1CCC9 (30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009918 PE=4 SV=1)

HSP 1 Score: 588.6 bits (1516), Expect = 2.0e-164
Identity = 309/383 (80.68%), Postives = 334/383 (87.21%), Query Frame = 0 

Query: 11  LNSRYSYPPLSSSRFSASSWNWNRF----SPNQRPKVLPLVSAAASSPSPISNAQTKGRL 70
           +NS     PLSS R S SS +W RF    S N + + LP+VS+AAS+ +PISNAQTK RL
Sbjct: 1   MNSLAHRVPLSSLRLSVSSSSWRRFSRKESHNHKFRALPVVSSAAST-TPISNAQTKERL 60

Query: 71  KLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVD 130
           KLKQLFKEAYERCCT PMDG+SFTLEDFHAAL+NYDFV+ELGTKVKGTVF TDA+GALVD
Sbjct: 61  KLKQLFKEAYERCCTTPMDGVSFTLEDFHAALSNYDFVSELGTKVKGTVFSTDASGALVD 120

Query: 131 TTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLRSVQYGLAW 190
           TTAKGTAYLP +EACILKIRHVEE GIYPGLEEEFVIIAE E    LILSLR +QYGLAW
Sbjct: 121 TTAKGTAYLPIEEACILKIRHVEEAGIYPGLEEEFVIIAEHETDGSLILSLRRLQYGLAW 180

Query: 191 ERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFV 250
           ERCRQLQAED+VIKGKVVGA KGG+ VLVEGLRGFVPFSQISAKST EELL+KELRLKFV
Sbjct: 181 ERCRQLQAEDVVIKGKVVGANKGGVFVLVEGLRGFVPFSQISAKSTAEELLDKELRLKFV 240

Query: 251 EVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQ 310
           EVDE+LSRL+LSN KAI +SQAELRIGSVVTGTVQ LK YGAFIDIGG+NGLLH+SQIS 
Sbjct: 241 EVDEELSRLILSNCKAIANSQAELRIGSVVTGTVQILKSYGAFIDIGGVNGLLHISQISH 300

Query: 311 NHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQ 370
           NHISD+ATVL+PGD LKVMILSYD  +GRVSLSTK LEPTPGDMIHNPKLVFEKADEMAQ
Sbjct: 301 NHISDMATVLRPGDTLKVMILSYDHERGRVSLSTKNLEPTPGDMIHNPKLVFEKADEMAQ 360

Query: 371 IFRQRIAQAETMARAGLLGFQLE 390
            FRQRIAQAE MAR  LL  Q E
Sbjct: 361 TFRQRIAQAEAMARVDLLRLQPE 382

[Close]
BLAST of CmUC06G112350 vs. ExPASy TrEMBL
Match: A0A6J1H681 (30S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459974 PE=4 SV=1)

HSP 1 Score: 588.6 bits (1516), Expect = 2.0e-164
Identity = 316/391 (80.82%), Postives = 334/391 (85.42%), Query Frame = 0 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           MSS AHQ CGL S     PLSS+  S       RFSP         V +AA+SP+PISNA
Sbjct: 1   MSSLAHQLCGLRS----SPLSSTPISTR----KRFSP---------VVSAAASPTPISNA 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RLKLKQLFKEAYERCC  PMDG+SFTLEDFHAALANYDFV+ELGTKVKGTVF TDA
Sbjct: 61  QTKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIA--EQEDGDGLILSLR 180
           NGALVDT+AKGTAYLPTQEACI  IRHVEE GIYPGLEEEFVII   EQED   LILSLR
Sbjct: 121 NGALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLR 180

Query: 181 SVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLN 240
           SVQYGLAWERCRQLQAED VIKGKVV   KGG+VVLVEGL+GFVPFSQISAKST EELLN
Sbjct: 181 SVQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLN 240

Query: 241 KELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGL 300
           KEL LKFVEVDEKL RL+LSNSKAIVSSQ+ELRIGSVVTG VQ LKPYGAF+DIGG+NGL
Sbjct: 241 KELLLKFVEVDEKLYRLILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGL 300

Query: 301 LHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVF 360
           LHVSQISQNHI DIA VLQPGDMLKVMILSYD ++GR+SLSTKKLEP+PGDM+HNPKLVF
Sbjct: 301 LHVSQISQNHIPDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVF 360

Query: 361 EKADEMAQIFRQRIAQAETMARAGLLGFQLE 390
           EKADEMAQ FRQRIAQAE MARA LL FQ E
Sbjct: 361 EKADEMAQTFRQRIAQAEAMARAELLEFQPE 374

[Close]
BLAST of CmUC06G112350 vs. TAIR 10
Match: AT5G30510.1 (ribosomal protein S1 )

HSP 1 Score: 487.3 bits (1253), Expect = 1.2e-137
Identity = 258/389 (66.32%), Postives = 309/389 (79.43%), Query Frame = 0 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           M+S A Q  GL      P  SSSR S  +     F  N+   V P + AA +    +S+ 
Sbjct: 1   MASLAQQFSGLRCS---PLSSSSRLSRRA--SKNFPQNKSASVSPTIVAAVA----MSSG 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RL+LK++F++AYERC T+PM+G++FT++DF AA+  YDF +E+GT+VKGTVF TDA
Sbjct: 61  QTKERLELKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLRSV 180
           NGALVD +AK +AYL  ++ACI +I+HVEE GI PG+ EEFVII E E  D L+LSLR++
Sbjct: 121 NGALVDISAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNI 180

Query: 181 QYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKE 240
           QY LAWERCRQLQAED+++K KV+GA KGGLV LVEGLRGFVPFSQIS+K+  EELL KE
Sbjct: 181 QYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKE 240

Query: 241 LRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLH 300
           + LKFVEVDE+ ++LVLSN KA+  SQA+L IGSVV G VQ LKPYGAFIDIGGINGLLH
Sbjct: 241 IPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLH 300

Query: 301 VSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEK 360
           VSQIS + +SDIATVLQPGD LKVMILS+D ++GRVSLSTKKLEPTPGDMI NPKLVFEK
Sbjct: 301 VSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEK 360

Query: 361 ADEMAQIFRQRIAQAETMARAGLLGFQLE 390
           A+EMAQ FRQRIAQAE MARA +L FQ E
Sbjct: 361 AEEMAQTFRQRIAQAEAMARADMLRFQPE 380

[Close]
BLAST of CmUC06G112350 vs. TAIR 10
Match: AT1G71720.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 99.0 bits (245), Expect = 9.5e-21
Identity = 66/210 (31.43%), Postives = 118/210 (56.19%), Query Frame = 0 

Query: 174 ILSLRSVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAK-ST 233
           +LS R     +AW R RQ++  +  I+ K+     GGL+  +EGLR F+P  ++  K +T
Sbjct: 261 LLSSRRYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNT 320

Query: 234 GEEL---LNKELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAF 293
             EL   + +   ++   ++E  + L+L  S+ +   +  LR G+++ GTV  + PYGA 
Sbjct: 321 FTELKENVGRRFLVQITRLNEDKNDLIL--SEKVAWEKLYLREGTLLEGTVVKILPYGAQ 380

Query: 294 IDIG--GINGLLHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTP 353
           + +G    +GLLH+S I++  I  ++ VLQ  + +KV+++       ++SLS   LE  P
Sbjct: 381 VKLGDSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVK-SLFPDKISLSIADLESEP 440

Query: 354 GDMIHNPKLVFEKADEMAQIFRQRIAQAET 378
           G  I + + VF +A+EMA+ +R+++    T
Sbjct: 441 GLFISDREKVFTEAEEMAKKYREKMPLVAT 467

[Close]
BLAST of CmUC06G112350 vs. TAIR 10
Match: AT3G23700.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-18
Identity = 54/180 (30.00%), Postives = 97/180 (53.89%), Query Frame = 0 

Query: 186 WERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEE---------- 245
           W+  +         +G+V G   GGL++    L GF+P+ Q+S   + +E          
Sbjct: 97  WKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAK 156

Query: 246 -LLNKELRLKFVEVDEKLSRLVLSNSKAIVSSQAE-LRIGSVVTGTVQFLKPYGAFIDIG 305
            L+  +L +K V+ DE+  +L+LS   A+    ++ + +G V  G V  ++ YGAFI + 
Sbjct: 157 TLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLR 216

Query: 306 ------GINGLLHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTP 348
                  + GL+HVS++S +++ D+  VL+ GD ++V++ + D  K R++LS K+LE  P
Sbjct: 217 FDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDP 276

[Close]
BLAST of CmUC06G112350 vs. TAIR 10
Match: AT4G29060.1 (elongation factor Ts family protein )

HSP 1 Score: 63.9 bits (154), Expect = 3.4e-10
Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 0 

Query: 269 ELRIGSVVTGTVQFLKPYGAFIDIGGI-NGLLHVSQISQNHISDIATVLQPGDMLKVMIL 328
           EL  G+  TG V+ ++P+GAF+D G   +GL+HVSQ+S N + D+++V+  G  +KV ++
Sbjct: 132 ELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLV 191

Query: 329 SYDCNKGRVSLSTKKLEPTP 348
             D    R+SL+ ++ +  P
Sbjct: 192 EADIESKRISLTMRENDDPP 211

[Close]
BLAST of CmUC06G112350 vs. TAIR 10
Match: AT4G29060.2 (elongation factor Ts family protein )

HSP 1 Score: 63.9 bits (154), Expect = 3.4e-10
Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 0 

Query: 269 ELRIGSVVTGTVQFLKPYGAFIDIGGI-NGLLHVSQISQNHISDIATVLQPGDMLKVMIL 328
           EL  G+  TG V+ ++P+GAF+D G   +GL+HVSQ+S N + D+++V+  G  +KV ++
Sbjct: 132 ELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLV 191

Query: 329 SYDCNKGRVSLSTKKLEPTP 348
             D    R+SL+ ++ +  P
Sbjct: 192 EADIESKRISLTMRENDDPP 211

The following BLAST results are available for this feature:
BLAST of CmUC06G112350 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038906593.11.4e-19191.0330S ribosomal protein S1, chloroplastic-like [Benincasa hispida][more]
XP_023006590.13.8e-16580.7130S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita maxima][more]
XP_022958818.18.5e-16580.4630S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita moschata][more]
XP_023006591.11.9e-16481.0730S ribosomal protein S1, chloroplastic-like isoform X2 [Cucurbita maxima][more]
XP_022138847.14.2e-16480.6830S ribosomal protein S1, chloroplastic-like isoform X1 [Momordica charantia][more]
BLAST of CmUC06G112350 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P293441.7e-14471.6630S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=... [more]
Q93VC71.7e-13666.3230S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 ... [more]
P462285.2e-7248.1230S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA... [more]
P735305.7e-7149.3230S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazus... [more]
P513451.8e-4035.8830S ribosomal protein S1, chloroplastic OS=Porphyra purpurea OX=2787 GN=rps1 PE=... [more]
BLAST of CmUC06G112350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1L0J31.9e-16580.7130S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3... [more]
A0A6J1H4534.1e-16580.4630S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita moschata OX... [more]
A0A6J1KY629.2e-16581.0730S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3... [more]
A0A6J1CCC92.0e-16480.6830S ribosomal protein S1, chloroplastic-like isoform X1 OS=Momordica charantia O... [more]
A0A6J1H6812.0e-16480.8230S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita moschata OX... [more]
BLAST of CmUC06G112350 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G30510.11.2e-13766.32ribosomal protein S1 [more]
AT1G71720.19.5e-2131.43Nucleic acid-binding proteins superfamily [more]
AT3G23700.12.0e-1830.00Nucleic acid-binding proteins superfamily [more]
AT4G29060.13.4e-1037.50elongation factor Ts family protein [more]
AT4G29060.23.4e-1037.50elongation factor Ts family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035104Ribosomal protein S1-likePRINTSPR00681RIBOSOMALS1coord: 108..126
score: 37.59
coord: 217..234
score: 32.54
coord: 199..215
score: 36.97
coord: 126..140
score: 24.76
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 194..260
e-value: 2.7E-7
score: 40.2
coord: 106..178
e-value: 0.016
score: 24.4
coord: 271..341
e-value: 2.9E-22
score: 90.0
IPR003029S1 domainPFAMPF00575S1coord: 270..341
e-value: 1.5E-16
score: 60.5
coord: 195..258
e-value: 3.4E-8
score: 33.7
IPR003029S1 domainPROSITEPS50126S1coord: 196..260
score: 13.699032
IPR003029S1 domainPROSITEPS50126S1coord: 108..178
score: 10.369238
IPR003029S1 domainPROSITEPS50126S1coord: 273..341
score: 20.471109
NoneNo IPR availableGENE3D2.40.50.140coord: 189..265
e-value: 1.2E-6
score: 30.5
NoneNo IPR availableGENE3D2.40.50.140coord: 91..188
e-value: 1.7E-5
score: 26.5
NoneNo IPR availableGENE3D2.40.50.140coord: 266..345
e-value: 1.2E-20
score: 75.2
NoneNo IPR availablePANTHERPTHR10724:SF1130S RIBOSOMAL PROTEIN S1, CHLOROPLASTICcoord: 45..390
NoneNo IPR availablePANTHERPTHR1072430S RIBOSOMAL PROTEIN S1coord: 45..390
NoneNo IPR availableCDDcd05692S1_RPS1_repeat_hs4coord: 273..341
e-value: 4.21835E-27
score: 100.823
NoneNo IPR availableCDDcd04465S1_RPS1_repeat_ec2_hs2coord: 196..258
e-value: 3.93777E-20
score: 81.7363
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 196..262
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 266..347
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 106..204

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC06G112350.1CmUC06G112350.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003676 nucleic acid binding