CmUC06G110360 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G110360
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	HTH myb-type domain-containing protein
Location	CmU531Chr06: 2421604 .. 2425067 (+)
RNA-Seq Expression	CmUC06G110360
Synteny	CmUC06G110360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATCTAGGAGCCAGGTAACAAAAGCAACAACGGCTTCACCATTTAGAATTTTTTATATCCCTAACAATGAAAGGAGGTTTTCATTTTACCCGTTGCTCGTTAGAGAGGATTTGAAGCAGCGGCAGCTGCTCAGGTCCGTTGATGGATCCCAACTCCTCAGGAGAAGACTTGGTTTTTAAGGTGATAATCCATTCCCTTTCCTCACAAAAAGGGAAAAAAAGTTTAAATCAGAAGAAGTGAAGAAAAGAAAATTGAGAACTGTTTATAACTGAGGTCTGAATATGATAGACTAGGAAGCCATATACTATTACAAAGCAACGAGAGCGCTGGACGGAGGAGGAGCACAATAGATTTCTAGAGGCGCTGAAGCTCTATGGGCGAGCATGGCAGAGAATTGAAGGTTGTATTTTGATCAATTGTCAGCATTCCTTTTTGGCTTTTGTTCATTCCGTAGCTTGTAACCTTGGTTGGATGAATTATATACTCTGCGGTCAATGATGCCAAATTTAATGACCATGCAGGTTATTAATAAGAATTTTCTTTAATTAAAAATGTTACGATCTGTGATATTTTTGATCAAGGGACAACTTTTCATTAATGAGATGAAAAGAGATTATTGTTCAATAGATATAAACTCCAAAAAGAGTGAAAAGAAAAAGTAAAGAGAAAAACAAATAAAACCGCTGTCCCAAACCAAAATGATAAACTTAAAAACATAATAAAGAACTAATACGTCAAACTGAATCAAGAGAATTAACGTTGAGCTGCCCATAGAAGGTGGAGTAGACTTCCGAAAGCTCCATCATATATTGGCGAAGAATCTCAGTCTTATTGTTGAGCTAATTTGATCTGGATCCTTTAACGACTGCTATCAAGTTTATATTGTCCTTTAAAAAGGTACCTGATTCTTCATTGTGTGTCTTTATATGCAGAACATATTGGAACCAAAACTGCAGTCCAGATACGAAGTCATGCGCAAAAGTTCTTTTCAAAGGTCAATGGGTACCCTTCTCTACTTATTCTTATTTTTTGGTTTGCTTCTTGGTTTGTTGTTCTTGATTTCAATGGTTTCATTTTTATTAAATATTATATTCTGGCAAACTTGTTCCTTTTGTCTTCTTTTTTTGGTCCAGTTGTTTGGTTTATAATCTTGCTTGCTCATCAGTAGAATGGTTGAGCGTTTCTTACAGCTAGTTCCATTTTTCTAGGGTAACAGGTATATTCATTGGCTTTATGGCCTAGTTGCCTTTATTCTGTATGTTCTTTTTCTTTTCTTTTTTTTTTAAAAATATATATATATATCTGTTGACTATAAATGATGCTATGTCTTGTAGTATGGGTACTAGACTAAAATTAGTTTGACAACATTGATGACACTGATCAAAATGATTTATGTCTATTCGAGGCTTTGACATCTTACCTTTGAGGTAAGCAAATAATGGATGAACCAGAAGACCTTTTCCCCAAAACATTCAAACCTAAAGTTATCGCATGACTTCTCTTTCTCAGGCTTGAAGGCTTCGTTTGTACTAAATCCTTCTGCTTAGGATGCTAGAGTTCTGAAGTTTTCTTGGATTGTTGGGTATTATCAAATGCTTACTGAAAGTTTCAAGTTAACTGGAAATAATGCACAATTCATATAGTTTCAGAATGCAAGGATAACTTTTAGTGGCACAAAGGAGGTACTGGAGACAGCATGAGATCAATAATATCACAAACTGACAAAACCTAGGTTCCAAATTCACAACGTGGCATTGGGGAAAGGATTCCAATGTTATCTACAAAAAGATCATCACTTACACGTACATTAGTTGAAGATCTTTTGTGAAATTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGGGGGTCTCAACAATGTGTAATTTGCAACTCATGAAAGTGAGGAGTTGTTTAAAAATCCAAAAGTTATGTGGATGTATTGACTTTAGACTAGTATCTTGTCTTTGAACTTGATTCAATAATGGTGCAGTAATCCAATGACACTTGAAGGTATGTGCTTTTGTTGGAGGGAGCATTTTGATTTGGCCATGATTAAAGCTTCTCTTTGGTTTTCCTTGTCTTCTTTGTCTGCTAATTATTCTTTTTGCATTATTTCTCTTCATTAGGATGCATTTATGCCCCCTTGCTAATTATTATTATTATTATTATTTTTTTGTTTAATTTGGTTTTTATCCTTGAACATTTTTTGTTTCTTTTCATTAATCAATGAAATTTTTGTTTCTTGGTGCAAAAAGATAATCCGATGATACTTAGGGAGTATTAGGGGAACCGTAATAGGATAGACTTGTATTGGAATGTAATCTAAAATGAATGTTCGGTTTGAATGCCCGATTTGTAATACAAAAGTCATTCCGTTCCGATAGTTTTCAACCCAATCCAATTTCCCACCGTTTCCATGGTTCGCGATCTCATGTTTATTCCTTTAAGTGTTCACACATTCCAATACTCCTCTGGTTCCCAGTAATCCTATTACATTCCAGCTCCCCAAATAACCCCTTAGGTACTTCAAATCAGTATTTCATGAGTGGATTTAAACATATTAAAGTTGATTATCATTTTGTTTGTGGGAAAATATAACAAGGCTTGGTTTCCACAGGATGTGAAAATTTGTAGAGTTATTATGAGCCATCTTCACCAAGGGCAGTAAATGGAGCTCAACTAGAGTCTCTTTGTAACAAGATGGGCATAACTAACATATATGCTTTAAGAGTGTTTCCATATGTACATTAAGTATATAGAACTTTAAATAGCTTAGTGACACGAGTCCACTCATTGGTTGTTCTTTATTGTAATTTTACCTTCTTTAGTTTAGGACTCCCAAGTCTCACGACCAATGTATATATGGCTCCAATGAATGGAATATGATTGAGTGCCTTTTTTTCCTCAAACCTTTGTTAGCTTATGTATATGCACCAGATTCTGTTATCTATTTGATATAAATTTGTCTCCTTTTGAACCTGTCATACACATTGTAAATTCATAAATAAAAGATGACCATTTTCAGTGCCCCCACATTAGTGATGAGATTGAATATATCTTCCCAACTCATTCTTGGCAGGCTCTTGTTGTAACGTTTAGGCTTCCCACCAATTTCTTATTTATAGAAATTTTGTTTCCCACCAATTTCTTATTTATTGAAATTTTGTTTCCATGTTGATAATGATTTGTTTTATAATTTTATTCTATAAATTAAAAAAAAAAAAAAAGAATGAAGAAGAAGAAAAGATTTTTTAAAAAAGTTTGGGGTTAAGGTTTTTTGTGCATCAAACTTGAGTTCAGCCAATACAATTTTTAGTCAAAGTATGTACTGCTTATTTTTAAATTATAATCTTTGCATACTCCTATCCATATGTATGTGTGTGTGTATATATGTATAATCTTTGCATGTTCCAGGATTCAGTGTCCTTGTCCAACTTATTTTCATGAAACTTTCCTGA

mRNA sequence

GCATCTAGGAGCCAGGTAACAAAAGCAACAACGGCTTCACCATTTAGAATTTTTTATATCCCTAACAATGAAAGGAGGTTTTCATTTTACCCGTTGCTCGTTAGAGAGGATTTGAAGCAGCGGCAGCTGCTCAGGAAGCCATATACTATTACAAAGCAACGAGAGCGCTGGACGGAGGAGGAGCACAATAGATTTCTAGAGGCGCTGAAGCTCTATGGGCGAGCATGGCAGAGAATTGAAGGTTGTATTTTGATCAATTGTCAGCATTCCTTTTTGGCTTTTGTTCATTCCGTAGCTTGTAACCTTGAACATATTGGAACCAAAACTGCAGTCCAGATACGAAGTCATGCGCAAAAGTTCTTTTCAAAGGTCAATGGTTGTTTGGGTAACAGGTATATTCATTGGCTTTATGGCCTAGTTGCCTTTATTCTTATGGGCTTGAAGGCTTCGTTTGCTCTTGTTGTAACGTTTAGGCTTCCCACCAATTTCTTATTTATAGAAATTTTGTTTCCCACCAATTTCTTATTTATTGAAATTTTGTTTCCATCCAATACAATTTTTAGTCAAAGATTCAGTGTCCTTGTCCAACTTATTTTCATGAAACTTTCCTGA

Coding sequence (CDS)

GCATCTAGGAGCCAGGTAACAAAAGCAACAACGGCTTCACCATTTAGAATTTTTTATATCCCTAACAATGAAAGGAGGTTTTCATTTTACCCGTTGCTCGTTAGAGAGGATTTGAAGCAGCGGCAGCTGCTCAGGAAGCCATATACTATTACAAAGCAACGAGAGCGCTGGACGGAGGAGGAGCACAATAGATTTCTAGAGGCGCTGAAGCTCTATGGGCGAGCATGGCAGAGAATTGAAGGTTGTATTTTGATCAATTGTCAGCATTCCTTTTTGGCTTTTGTTCATTCCGTAGCTTGTAACCTTGAACATATTGGAACCAAAACTGCAGTCCAGATACGAAGTCATGCGCAAAAGTTCTTTTCAAAGGTCAATGGTTGTTTGGGTAACAGGTATATTCATTGGCTTTATGGCCTAGTTGCCTTTATTCTTATGGGCTTGAAGGCTTCGTTTGCTCTTGTTGTAACGTTTAGGCTTCCCACCAATTTCTTATTTATAGAAATTTTGTTTCCCACCAATTTCTTATTTATTGAAATTTTGTTTCCATCCAATACAATTTTTAGTCAAAGATTCAGTGTCCTTGTCCAACTTATTTTCATGAAACTTTCCTGA

Protein sequence

ASRSQVTKATTASPFRIFYIPNNERRFSFYPLLVREDLKQRQLLRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILINCQHSFLAFVHSVACNLEHIGTKTAVQIRSHAQKFFSKVNGCLGNRYIHWLYGLVAFILMGLKASFALVVTFRLPTNFLFIEILFPTNFLFIEILFPSNTIFSQRFSVLVQLIFMKLS

Homology

[Close]

BLAST of CmUC06G110360 vs. NCBI nr
Match: EXC13655.1 (Protein LHY [Morus notabilis])

HSP 1 Score: 147.9 bits (372), Expect = 9.5e-32
Identity = 79/120 (65.83%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 6   VTKATTASPFRIFYIPNNERRFSFYPLLVREDLKQRQLLRKPYTITKQRERWTEEEHNRF 65
           ++  TTA P     +  N  +FS YPLLVREDLKQRQL RKPYTITKQRERWTEEEHNRF
Sbjct: 39  LSTTTTALPLLAVDVVRNHGKFSLYPLLVREDLKQRQLPRKPYTITKQRERWTEEEHNRF 98

Query: 66  LEALKLYGRAWQRIEGCILINCQHSFLAFVHSVACNLEHIGTKTAVQIRSHAQKFFSKVN 125
           LEALKLYGRAWQRIE                      EHIGTKTAVQIRSHAQKFFSK+N
Sbjct: 99  LEALKLYGRAWQRIE----------------------EHIGTKTAVQIRSHAQKFFSKIN 136

[Close]

BLAST of CmUC06G110360 vs. NCBI nr
Match: BBG97729.1 (Homeodomain-like superfamily protein, partial [Prunus dulcis])

HSP 1 Score: 133.7 bits (335), Expect = 1.8e-27
Identity = 80/146 (54.79%), Postives = 90/146 (61.64%), Query Frame = 0


Query: 1   ASRSQVTKATTASPFRIFYIPN--------------NERRFSFYPLLVREDLKQRQL--- 60
           +S+S +  +  ASP ++F+                 NERR  FYPLLVREDLKQR+L   
Sbjct: 97  SSQSTMAFSEVASPSQLFFSRTTKTALLVIKLAAFINERRSLFYPLLVREDLKQRKLRRS 156

Query: 61  -----LRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILINCQHSFLAFVHSV 120
                 RKPYTITKQRERWTEEEHNRFL+ALKLYGRAWQRIE                  
Sbjct: 157 GNGHTARKPYTITKQRERWTEEEHNRFLDALKLYGRAWQRIE------------------ 216

Query: 121 ACNLEHIGTKTAVQIRSHAQKFFSKV 125
               EHIGTKTAVQIRSHAQKFFSK+
Sbjct: 217 ----EHIGTKTAVQIRSHAQKFFSKL 220

[Close]

BLAST of CmUC06G110360 vs. NCBI nr
Match: TXG63129.1 (hypothetical protein EZV62_010123 [Acer yangbiense])

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-26
Identity = 73/109 (66.97%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 23  NERRFSFYPLLVREDLKQRQL-------LRKPYTITKQRERWTEEEHNRFLEALKLYGRA 82
           NE R  FYPLLVREDLKQR L        RKPYTITKQRERWTE+EHNRFLEALKLYGRA
Sbjct: 43  NEGRCLFYPLLVREDLKQRYLPRSGYGHTRKPYTITKQRERWTEDEHNRFLEALKLYGRA 102

Query: 83  WQRIEGCILINCQHSFLAFVHSVACNLEHIGTKTAVQIRSHAQKFFSKV 125
           WQRIE                      EHIGTKTAVQIRSHAQKFFSK+
Sbjct: 103 WQRIE----------------------EHIGTKTAVQIRSHAQKFFSKL 129

[Close]

BLAST of CmUC06G110360 vs. NCBI nr
Match: CAD5311390.1 (unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 129.0 bits (323), Expect = 4.5e-26
Identity = 72/117 (61.54%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 10  TTASPFRIFYIPNNERRFSFYPLLVREDLKQR--QLLRKPYTITKQRERWTEEEHNRFLE 69
           TTA  F  F++  ++R F FY LLVREDLKQR     RKPYTITKQRERWTE+EH RFLE
Sbjct: 392 TTALQFENFHVWGDQRWFLFYTLLVREDLKQRIAAPARKPYTITKQRERWTEDEHERFLE 451

Query: 70  ALKLYGRAWQRIEGCILINCQHSFLAFVHSVACNLEHIGTKTAVQIRSHAQKFFSKV 125
           AL+LYGRAWQRIE                      EHIGTKTAVQIRSHAQKFF+K+
Sbjct: 452 ALRLYGRAWQRIE----------------------EHIGTKTAVQIRSHAQKFFTKL 486

[Close]

BLAST of CmUC06G110360 vs. NCBI nr
Match: CAD5311389.1 (unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 129.0 bits (323), Expect = 4.5e-26
Identity = 72/117 (61.54%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 10  TTASPFRIFYIPNNERRFSFYPLLVREDLKQR--QLLRKPYTITKQRERWTEEEHNRFLE 69
           TTA  F  F++  ++R F FY LLVREDLKQR     RKPYTITKQRERWTE+EH RFLE
Sbjct: 392 TTALQFENFHVWGDQRWFLFYTLLVREDLKQRIAAPARKPYTITKQRERWTEDEHERFLE 451

Query: 70  ALKLYGRAWQRIEGCILINCQHSFLAFVHSVACNLEHIGTKTAVQIRSHAQKFFSKV 125
           AL+LYGRAWQRIE                      EHIGTKTAVQIRSHAQKFF+K+
Sbjct: 452 ALRLYGRAWQRIE----------------------EHIGTKTAVQIRSHAQKFFTKL 486

[Close]

BLAST of CmUC06G110360 vs. ExPASy Swiss-Prot
Match: A0A0G3VTN5 (Protein LATE ELONGATED HYPOCOTYL OS=Petunia hybrida OX=4102 GN=LHY PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-22
Identity = 56/80 (70.00%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 45  RKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILINCQHSFLAFVHSVACNLEH 104
           RKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIE                      EH
Sbjct: 15  RKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIE----------------------EH 72

Query: 105 IGTKTAVQIRSHAQKFFSKV 125
           IGTKTAVQIRSHAQKFF+K+
Sbjct: 75  IGTKTAVQIRSHAQKFFTKL 72

[Close]

BLAST of CmUC06G110360 vs. ExPASy Swiss-Prot
Match: P92973 (Protein CCA1 OS=Arabidopsis thaliana OX=3702 GN=CCA1 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-21
Identity = 53/80 (66.25%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 45  RKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILINCQHSFLAFVHSVACNLEH 104
           RKPYTITKQRERWTEEEHNRF+EAL+LYGRAWQ+IE                      EH
Sbjct: 15  RKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIE----------------------EH 72

Query: 105 IGTKTAVQIRSHAQKFFSKV 125
           + TKTAVQIRSHAQKFFSKV
Sbjct: 75  VATKTAVQIRSHAQKFFSKV 72

[Close]

BLAST of CmUC06G110360 vs. ExPASy Swiss-Prot
Match: Q6R0H1 (Protein LHY OS=Arabidopsis thaliana OX=3702 GN=LHY PE=1 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 4.6e-21
Identity = 53/80 (66.25%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 45  RKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILINCQHSFLAFVHSVACNLEH 104
           RKPYTITKQRERWTE+EH RFLEAL+LYGRAWQRIE                      EH
Sbjct: 15  RKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIE----------------------EH 72

Query: 105 IGTKTAVQIRSHAQKFFSKV 125
           IGTKTAVQIRSHAQKFF+K+
Sbjct: 75  IGTKTAVQIRSHAQKFFTKL 72

[Close]

BLAST of CmUC06G110360 vs. ExPASy Swiss-Prot
Match: F4KGY6 (Protein REVEILLE 1 OS=Arabidopsis thaliana OX=3702 GN=RVE1 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-20
Identity = 50/81 (61.73%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 44  LRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILINCQHSFLAFVHSVACNLE 103
           +RKPYTITK+RERWT+EEH +F+EALKLYGRAW+RIE                      E
Sbjct: 45  VRKPYTITKERERWTDEEHKKFVEALKLYGRAWRRIE----------------------E 103

Query: 104 HIGTKTAVQIRSHAQKFFSKV 125
           H+G+KTAVQIRSHAQKFFSKV
Sbjct: 105 HVGSKTAVQIRSHAQKFFSKV 103

[Close]

BLAST of CmUC06G110360 vs. ExPASy Swiss-Prot
Match: F4K5X6 (Protein REVEILLE 2 OS=Arabidopsis thaliana OX=3702 GN=RVE2 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.6e-20
Identity = 50/80 (62.50%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 45  RKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILINCQHSFLAFVHSVACNLEH 104
           RKPYTITKQRE+WTE EH +F+EALKLYGRAW+RIE                      EH
Sbjct: 27  RKPYTITKQREKWTEAEHEKFVEALKLYGRAWRRIE----------------------EH 84

Query: 105 IGTKTAVQIRSHAQKFFSKV 125
           +GTKTAVQIRSHAQKFF+KV
Sbjct: 87  VGTKTAVQIRSHAQKFFTKV 84

[Close]

BLAST of CmUC06G110360 vs. ExPASy TrEMBL
Match: W9S411 (Protein LHY OS=Morus notabilis OX=981085 GN=L484_019614 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.6e-32
Identity = 79/120 (65.83%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 6   VTKATTASPFRIFYIPNNERRFSFYPLLVREDLKQRQLLRKPYTITKQRERWTEEEHNRF 65
           ++  TTA P     +  N  +FS YPLLVREDLKQRQL RKPYTITKQRERWTEEEHNRF
Sbjct: 39  LSTTTTALPLLAVDVVRNHGKFSLYPLLVREDLKQRQLPRKPYTITKQRERWTEEEHNRF 98

Query: 66  LEALKLYGRAWQRIEGCILINCQHSFLAFVHSVACNLEHIGTKTAVQIRSHAQKFFSKVN 125
           LEALKLYGRAWQRIE                      EHIGTKTAVQIRSHAQKFFSK+N
Sbjct: 99  LEALKLYGRAWQRIE----------------------EHIGTKTAVQIRSHAQKFFSKIN 136

[Close]

BLAST of CmUC06G110360 vs. ExPASy TrEMBL
Match: A0A4Y1R0W5 (Homeodomain-like superfamily protein (Fragment) OS=Prunus dulcis OX=3755 GN=Prudu_006948 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 8.9e-28
Identity = 80/146 (54.79%), Postives = 90/146 (61.64%), Query Frame = 0


Query: 1   ASRSQVTKATTASPFRIFYIPN--------------NERRFSFYPLLVREDLKQRQL--- 60
           +S+S +  +  ASP ++F+                 NERR  FYPLLVREDLKQR+L   
Sbjct: 97  SSQSTMAFSEVASPSQLFFSRTTKTALLVIKLAAFINERRSLFYPLLVREDLKQRKLRRS 156

Query: 61  -----LRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILINCQHSFLAFVHSV 120
                 RKPYTITKQRERWTEEEHNRFL+ALKLYGRAWQRIE                  
Sbjct: 157 GNGHTARKPYTITKQRERWTEEEHNRFLDALKLYGRAWQRIE------------------ 216

Query: 121 ACNLEHIGTKTAVQIRSHAQKFFSKV 125
               EHIGTKTAVQIRSHAQKFFSK+
Sbjct: 217 ----EHIGTKTAVQIRSHAQKFFSKL 220

[Close]

BLAST of CmUC06G110360 vs. ExPASy TrEMBL
Match: A0A5C7I2D9 (HTH myb-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_010123 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-26
Identity = 73/109 (66.97%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 23  NERRFSFYPLLVREDLKQRQL-------LRKPYTITKQRERWTEEEHNRFLEALKLYGRA 82
           NE R  FYPLLVREDLKQR L        RKPYTITKQRERWTE+EHNRFLEALKLYGRA
Sbjct: 43  NEGRCLFYPLLVREDLKQRYLPRSGYGHTRKPYTITKQRERWTEDEHNRFLEALKLYGRA 102

Query: 83  WQRIEGCILINCQHSFLAFVHSVACNLEHIGTKTAVQIRSHAQKFFSKV 125
           WQRIE                      EHIGTKTAVQIRSHAQKFFSK+
Sbjct: 103 WQRIE----------------------EHIGTKTAVQIRSHAQKFFSKL 129

[Close]

BLAST of CmUC06G110360 vs. ExPASy TrEMBL
Match: A0A7G2DP26 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS6 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.2e-26
Identity = 72/117 (61.54%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 10  TTASPFRIFYIPNNERRFSFYPLLVREDLKQR--QLLRKPYTITKQRERWTEEEHNRFLE 69
           TTA  F  F++  ++R F FY LLVREDLKQR     RKPYTITKQRERWTE+EH RFLE
Sbjct: 392 TTALQFENFHVWGDQRWFLFYTLLVREDLKQRIAAPARKPYTITKQRERWTEDEHERFLE 451

Query: 70  ALKLYGRAWQRIEGCILINCQHSFLAFVHSVACNLEHIGTKTAVQIRSHAQKFFSKV 125
           AL+LYGRAWQRIE                      EHIGTKTAVQIRSHAQKFF+K+
Sbjct: 452 ALRLYGRAWQRIE----------------------EHIGTKTAVQIRSHAQKFFTKL 486

[Close]

BLAST of CmUC06G110360 vs. ExPASy TrEMBL
Match: A0A7G2DQF0 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS6 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.2e-26
Identity = 72/117 (61.54%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 10  TTASPFRIFYIPNNERRFSFYPLLVREDLKQR--QLLRKPYTITKQRERWTEEEHNRFLE 69
           TTA  F  F++  ++R F FY LLVREDLKQR     RKPYTITKQRERWTE+EH RFLE
Sbjct: 392 TTALQFENFHVWGDQRWFLFYTLLVREDLKQRIAAPARKPYTITKQRERWTEDEHERFLE 451

Query: 70  ALKLYGRAWQRIEGCILINCQHSFLAFVHSVACNLEHIGTKTAVQIRSHAQKFFSKV 125
           AL+LYGRAWQRIE                      EHIGTKTAVQIRSHAQKFF+K+
Sbjct: 452 ALRLYGRAWQRIE----------------------EHIGTKTAVQIRSHAQKFFTKL 486

[Close]

BLAST of CmUC06G110360 vs. TAIR 10
Match: AT2G46830.1 (circadian clock associated 1 )

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-22
Identity = 53/80 (66.25%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 45  RKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILINCQHSFLAFVHSVACNLEH 104
           RKPYTITKQRERWTEEEHNRF+EAL+LYGRAWQ+IE                      EH
Sbjct: 15  RKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIE----------------------EH 72

Query: 105 IGTKTAVQIRSHAQKFFSKV 125
           + TKTAVQIRSHAQKFFSKV
Sbjct: 75  VATKTAVQIRSHAQKFFSKV 72

[Close]

BLAST of CmUC06G110360 vs. TAIR 10
Match: AT1G01060.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 3.3e-22
Identity = 53/80 (66.25%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 45  RKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILINCQHSFLAFVHSVACNLEH 104
           RKPYTITKQRERWTE+EH RFLEAL+LYGRAWQRIE                      EH
Sbjct: 15  RKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIE----------------------EH 72

Query: 105 IGTKTAVQIRSHAQKFFSKV 125
           IGTKTAVQIRSHAQKFF+K+
Sbjct: 75  IGTKTAVQIRSHAQKFFTKL 72

[Close]

BLAST of CmUC06G110360 vs. TAIR 10
Match: AT1G01060.2 (Homeodomain-like superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 3.3e-22
Identity = 53/80 (66.25%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 45  RKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILINCQHSFLAFVHSVACNLEH 104
           RKPYTITKQRERWTE+EH RFLEAL+LYGRAWQRIE                      EH
Sbjct: 15  RKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIE----------------------EH 72

Query: 105 IGTKTAVQIRSHAQKFFSKV 125
           IGTKTAVQIRSHAQKFF+K+
Sbjct: 75  IGTKTAVQIRSHAQKFFTKL 72

[Close]

BLAST of CmUC06G110360 vs. TAIR 10
Match: AT1G01060.3 (Homeodomain-like superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 3.3e-22
Identity = 53/80 (66.25%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 45  RKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILINCQHSFLAFVHSVACNLEH 104
           RKPYTITKQRERWTE+EH RFLEAL+LYGRAWQRIE                      EH
Sbjct: 15  RKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIE----------------------EH 72

Query: 105 IGTKTAVQIRSHAQKFFSKV 125
           IGTKTAVQIRSHAQKFF+K+
Sbjct: 75  IGTKTAVQIRSHAQKFFTKL 72

[Close]

BLAST of CmUC06G110360 vs. TAIR 10
Match: AT1G01060.4 (Homeodomain-like superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 3.3e-22
Identity = 53/80 (66.25%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 45  RKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILINCQHSFLAFVHSVACNLEH 104
           RKPYTITKQRERWTE+EH RFLEAL+LYGRAWQRIE                      EH
Sbjct: 15  RKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIE----------------------EH 72

Query: 105 IGTKTAVQIRSHAQKFFSKV 125
           IGTKTAVQIRSHAQKFF+K+
Sbjct: 75  IGTKTAVQIRSHAQKFFTKL 72

The following BLAST results are available for this feature:

BLAST of CmUC06G110360 vs. NCBI nr


Match Name	E-value	Identity	Description
EXC13655.1	9.5e-32	65.83	Protein LHY [Morus notabilis]	[more]
BBG97729.1	1.8e-27	54.79	Homeodomain-like superfamily protein, partial [Prunus dulcis]	[more]
TXG63129.1	2.7e-26	66.97	hypothetical protein EZV62_010123 [Acer yangbiense]	[more]
CAD5311390.1	4.5e-26	61.54	unnamed protein product [Arabidopsis thaliana]	[more]
CAD5311389.1	4.5e-26	61.54	unnamed protein product [Arabidopsis thaliana]	[more]

BLAST of CmUC06G110360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A0G3VTN5	1.9e-22	70.00	Protein LATE ELONGATED HYPOCOTYL OS=Petunia hybrida OX=4102 GN=LHY PE=2 SV=1	[more]
P92973	2.1e-21	66.25	Protein CCA1 OS=Arabidopsis thaliana OX=3702 GN=CCA1 PE=1 SV=1	[more]
Q6R0H1	4.6e-21	66.25	Protein LHY OS=Arabidopsis thaliana OX=3702 GN=LHY PE=1 SV=2	[more]
F4KGY6	3.0e-20	61.73	Protein REVEILLE 1 OS=Arabidopsis thaliana OX=3702 GN=RVE1 PE=1 SV=1	[more]
F4K5X6	8.6e-20	62.50	Protein REVEILLE 2 OS=Arabidopsis thaliana OX=3702 GN=RVE2 PE=1 SV=1	[more]

BLAST of CmUC06G110360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
W9S411	4.6e-32	65.83	Protein LHY OS=Morus notabilis OX=981085 GN=L484_019614 PE=4 SV=1	[more]
A0A4Y1R0W5	8.9e-28	54.79	Homeodomain-like superfamily protein (Fragment) OS=Prunus dulcis OX=3755 GN=Prud...	[more]
A0A5C7I2D9	1.3e-26	66.97	HTH myb-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01...	[more]
A0A7G2DP26	2.2e-26	61.54	(thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOC...	[more]
A0A7G2DQF0	2.2e-26	61.54	(thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOC...	[more]

BLAST of CmUC06G110360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46830.1	1.5e-22	66.25	circadian clock associated 1	[more]
AT1G01060.1	3.3e-22	66.25	Homeodomain-like superfamily protein	[more]
AT1G01060.2	3.3e-22	66.25	Homeodomain-like superfamily protein	[more]
AT1G01060.3	3.3e-22	66.25	Homeodomain-like superfamily protein	[more]
AT1G01060.4	3.3e-22	66.25	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 53..123 e-value: 2.2E-6 score: 37.2
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 56..121 e-value: 1.34353E-5 score: 39.0958
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 52..80 e-value: 2.5E-8 score: 32.1
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 54..79 e-value: 1.3E-6 score: 28.4
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 49..125 score: 10.845602
None	No IPR available	GENE3D	1.10.10.60		coord: 56..126 e-value: 4.4E-15 score: 57.5
None	No IPR available	PANTHER	PTHR12802:SF109	PROTEIN LHY	coord: 103..124
None	No IPR available	PANTHER	PTHR12802	SWI/SNF COMPLEX-RELATED	coord: 103..124
None	No IPR available	PANTHER	PTHR12802:SF109	PROTEIN LHY	coord: 45..81
None	No IPR available	PANTHER	PTHR12802	SWI/SNF COMPLEX-RELATED	coord: 45..81
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 48..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G110360.1	CmUC06G110360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding