CmUC06G109890 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G109890
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr06: 1872234 .. 1874036 (+)
RNA-Seq Expression	CmUC06G109890
Synteny	CmUC06G109890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGATCTCAAAAGTTTTCATCCTCATATGTAAGCGATGACACATACACTGGATTTCAGGAGTTTCACTTGATTTCGATTTATTTTTGTTTTTTAATGTAATGTGATTACTGATTAGTTTTTCATGGTCCTGGCTGCCTCATAAATGGCTCGTCTTTCGGTAAAAATATTTGGTATTTAGCTCCCTGAGCAAATTCATTATCGATATTTGAAGTTTAGGACTGAAAATATCTGAACTGGAAAAGAAAGACGAGCCTTCCAGAAAAAGTTCATCCTTTCTAGTGCTTGAATAGTATATGTCAAACTGGTTACAACCTTTAAAAACATGATATGGGTTTTGGGTAATCGAGTAAAATAAGCCTTCTAAGTAGGTTGATGGAAGATGGAACCATGTCAACTTTGATTGGAATGCTTACTCCTTGATGGAAGATGGAACTATGTCAACTTTTATTGGAATGCTTACTCCTTTATGTTGGATTCGTAGAAAATACAAATATGATATAGAATGGTGTTATCCAAATTCTTATTGAGGTGGTCAGAGGAAAAGAAAATGTCTAACGATTTAATCCAGTTGAAAAACCGTGAGTTGTAATGTATCGAGTGGACCAATATGGACTTTGCCTGCAGATCTAATTTGTTTAGTGTAGTAATTTCTTCAGATATCTCTACAACTCAGTTTTTTCGGGGCTTTTTCCCTTGATGGTTAGTCTGTTTGATTCCAGACCTCAATATGATGCTTCACTTGTTGCCGAGGTCCTCAGCTAAAACAATTTCAGGACAAACTTGTTCGTACGGTTTGCTTCTTAAATGCTTAACTTGTATCATACGATAAGAGTAGTACTCCACTCAAAAATGGTAGATAGGGTATGTGGGTAAGGGTTTCTCTCTTCATCCACTTGTGTATTAAACTGAACCATCTAAAACTCCCAAGTCTTTTGAGGTTCATTTCTTTTGCAGGAATTGTTTTCAGTTTCATAACTGCTGGGCATGAACTGTAGCCACAATTACAGGTACTACCTTGCTCTACCCAGTTTTAATCAAATTTGAATATTGCATTTCTTGAAAGTCTTTCCACTAAAGGTTTGAAATGGCTGTCTCAGAATGTCAGGCATTTACTAACCATTGAACGGGAGAAGTATAAGTAGGTTGATCATCAAACATTGACATAAAAGGAATCCTGATTGTTCCTCGCTTACTGGACCCTACCAACCAGAATTTTCTGGGGGTGGATTTTTATTTTGCATAAGATGATCTTTATCTTTAATTTTGCAGAGATCCAGGGAGAGAAAAAGAAGAAAAAAAAAATTGGAGATGGATAAATGTCTTTGTTGCAGGGATTCAAAGCAACCTCTCTTATTTAATGTTTGTCCAAAACAAACAGCTTATAAGAGTGGTTGGGTGAAGAACTGGTCAACTTACATAATTGATAACAATTCCTTCTATGATAGGTAATTTCTGTTCAAAATTTCTCAATTGCCCTTGCTTGATGGAGACCCCCTCTTATTTGCCTTTTGATATGTTTCTAGGATTGGTAGGATTTTTCTTTAAATGTTATTGACCTTATCAGGTTGGCCTACATAAGAAAATTAAAAAAAAATGATAAAACAAAATAAAAAGGAAAAAAAAAAAGGTTCTAGCTGTAAGTTTTTGTGGTCTACCATGACGTGCTGCCCACGTGATTGACAAATGAGAAACCCTAAGTCAGCAATCCACAATCCCAATCCAATTCCTCACCTTTATTTATTTATTATTTATTTTTTCCCCCGTCTTTTGACAATGAAATTTGTTCATATAAAGGTGA

mRNA sequence

ATGAGTGATCTCAAAAGTTTTCATCCTCATATACCTCAATATGATGCTTCACTTGTTGCCGAGCCACAATTACAGAGATCCAGGGAGAGAAAAAGAAGAAAAAAAAAATTGGAGATGGATAAATGTCTTTGTTGCAGGGATTCAAAGCAACCTCTCTTATTTAATGTTTGTCCAAAACAAACAGCTTATAAGAGTGGTTGGGTGAAGAACTGGTCAACTTACATAATTGATAACAATTCCTTCTATGATAGGTGA

Coding sequence (CDS)

ATGAGTGATCTCAAAAGTTTTCATCCTCATATACCTCAATATGATGCTTCACTTGTTGCCGAGCCACAATTACAGAGATCCAGGGAGAGAAAAAGAAGAAAAAAAAAATTGGAGATGGATAAATGTCTTTGTTGCAGGGATTCAAAGCAACCTCTCTTATTTAATGTTTGTCCAAAACAAACAGCTTATAAGAGTGGTTGGGTGAAGAACTGGTCAACTTACATAATTGATAACAATTCCTTCTATGATAGGTGA

Protein sequence

MSDLKSFHPHIPQYDASLVAEPQLQRSRERKRRKKKLEMDKCLCCRDSKQPLLFNVCPKQTAYKSGWVKNWSTYIIDNNSFYDR

Homology

[Close]

BLAST of CmUC06G109890 vs. NCBI nr
Match: XP_023004311.1 (uncharacterized protein LOC111497672 isoform X1 [Cucurbita maxima] >XP_023004312.1 uncharacterized protein LOC111497672 isoform X1 [Cucurbita maxima])

HSP 1 Score: 95.1 bits (235), Expect = 3.0e-16
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 29 ERKRRKKKLEMDKCLCCRDSKQPLLFNVCPKQTAYKSGWVKNWSTYI--IDNNSFYD 84
          +R R KKK+E+DKC CCRD+KQPLLFNVCPKQTAYKSGWVK WS YI  ID NSF D
Sbjct: 38 QRFREKKKMEIDKCFCCRDAKQPLLFNVCPKQTAYKSGWVKKWSAYIILIDENSFSD 94

[Close]

BLAST of CmUC06G109890 vs. NCBI nr
Match: XP_023004313.1 (uncharacterized protein LOC111497672 isoform X2 [Cucurbita maxima])

HSP 1 Score: 95.1 bits (235), Expect = 3.0e-16
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 29 ERKRRKKKLEMDKCLCCRDSKQPLLFNVCPKQTAYKSGWVKNWSTYI--IDNNSFYD 84
          +R R KKK+E+DKC CCRD+KQPLLFNVCPKQTAYKSGWVK WS YI  ID NSF D
Sbjct: 23 QRFREKKKMEIDKCFCCRDAKQPLLFNVCPKQTAYKSGWVKKWSAYIILIDENSFSD 79

[Close]

BLAST of CmUC06G109890 vs. NCBI nr
Match: XP_023004314.1 (uncharacterized protein LOC111497672 isoform X3 [Cucurbita maxima])

HSP 1 Score: 95.1 bits (235), Expect = 3.0e-16
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 29 ERKRRKKKLEMDKCLCCRDSKQPLLFNVCPKQTAYKSGWVKNWSTYI--IDNNSFYD 84
          +R R KKK+E+DKC CCRD+KQPLLFNVCPKQTAYKSGWVK WS YI  ID NSF D
Sbjct: 38 QRFREKKKMEIDKCFCCRDAKQPLLFNVCPKQTAYKSGWVKKWSAYIILIDENSFSD 94

[Close]

BLAST of CmUC06G109890 vs. ExPASy TrEMBL
Match: A0A6J1KQ30 (uncharacterized protein LOC111497672 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497672 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 29 ERKRRKKKLEMDKCLCCRDSKQPLLFNVCPKQTAYKSGWVKNWSTYI--IDNNSFYD 84
          +R R KKK+E+DKC CCRD+KQPLLFNVCPKQTAYKSGWVK WS YI  ID NSF D
Sbjct: 38 QRFREKKKMEIDKCFCCRDAKQPLLFNVCPKQTAYKSGWVKKWSAYIILIDENSFSD 94

[Close]

BLAST of CmUC06G109890 vs. ExPASy TrEMBL
Match: A0A6J1KZ40 (uncharacterized protein LOC111497672 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497672 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 29 ERKRRKKKLEMDKCLCCRDSKQPLLFNVCPKQTAYKSGWVKNWSTYI--IDNNSFYD 84
          +R R KKK+E+DKC CCRD+KQPLLFNVCPKQTAYKSGWVK WS YI  ID NSF D
Sbjct: 23 QRFREKKKMEIDKCFCCRDAKQPLLFNVCPKQTAYKSGWVKKWSAYIILIDENSFSD 79

[Close]

BLAST of CmUC06G109890 vs. ExPASy TrEMBL
Match: A0A6J1KVX4 (uncharacterized protein LOC111497672 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111497672 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 29 ERKRRKKKLEMDKCLCCRDSKQPLLFNVCPKQTAYKSGWVKNWSTYI--IDNNSFYD 84
          +R R KKK+E+DKC CCRD+KQPLLFNVCPKQTAYKSGWVK WS YI  ID NSF D
Sbjct: 38 QRFREKKKMEIDKCFCCRDAKQPLLFNVCPKQTAYKSGWVKKWSAYIILIDENSFSD 94

The following BLAST results are available for this feature:

BLAST of CmUC06G109890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023004311.1	3.0e-16	77.19	uncharacterized protein LOC111497672 isoform X1 [Cucurbita maxima] >XP_023004312...	[more]
XP_023004313.1	3.0e-16	77.19	uncharacterized protein LOC111497672 isoform X2 [Cucurbita maxima]	[more]
XP_023004314.1	3.0e-16	77.19	uncharacterized protein LOC111497672 isoform X3 [Cucurbita maxima]	[more]

BLAST of CmUC06G109890 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC06G109890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KQ30	1.5e-16	77.19	uncharacterized protein LOC111497672 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KZ40	1.5e-16	77.19	uncharacterized protein LOC111497672 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KVX4	1.5e-16	77.19	uncharacterized protein LOC111497672 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmUC06G109890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G109890.1	CmUC06G109890.1	mRNA