CmUC06G108670 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G108670
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	RNA polymerase sigma factor
Location	CmU531Chr06: 555837 .. 560206 (-)
RNA-Seq Expression	CmUC06G108670
Synteny	CmUC06G108670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCAGAGTGGCAGTCTCTTCAAGTCTTATCCATTGTTTTATCAACAAAGCCTCCAAATGCCAATTTACCAACACAAGTTTTCCTCTCCACTCCTCTTCTCTCAACCCACTCTCCATTGCTTCTTCTTCTTCTTCTTCATCAATCAACTCAATTCCCCATCTCTGAAACCCTTCTTCAATCTTCATTTTTCAAGCTCCCAATGAAACCCTTTTCTTATGCACCACATTCCTGCCTCTTCCCCTTCTGGGTCTCCCACGGACTTCAATTTTGAATGCCTTCATTTATGTCCGCCATAGTTGCAGAGTAGCAGAAACCCATTTGGAGTACGAAGAAGAAGAACATCAACAGGGCGATGTCTTGTTTACTTCCCCAATTCAAGTGCCATCCTGAAACATTCTCAATCCAATTCAAGACCGCGGCTAATTATTCTCCCCATCACAGCTTTCTTCCCACTGCCAATTCCAGTTACAGTGAGTGTTTTTCTCTCTCATTCTCTCTTTTTCGACCTTTTGTTTTGTACTGTTCAAATGGGGTTTTGGTGTTTTCCGTTGGTTAATTGTCAAGCTGGGATAAAATGGCTTGTGTGTAGTTGCTAAGTTCAGCCATATGTTCAAGTTTTTGAGTTGGATTGCTCGAATTTCTGTCCTGAGATTCTTTGTCTTAGATAGTCTAAGGATTTACAAATGTGGTTGTCGAGCATCTAAGTTCTGATTTACATTAAAGAATTTCCCAAATGGTCCTGATATCGATGTTGCTATTGTGTTTGATGATGATTGAAACTTAAATTTCCCTTTTCAAAGAATATTGTGTGAGTTTTAAGTGGCAGAATGTTCTTTGTATTGAAATACTAGGTTGTGGTATGGTGCCCAATGGAGTGATTGGGAAATATGTCCTATCCAATTTTCAGGGAAAAAAATTCTAGCAAAAAACAAAAAGAAACCCTAAGGCAAAATATTGATGGAAGTAGTTTACTAAACCAGTCATTCAATTAGTCTATACTTTACTTAAAGTATCATTGGTTTTGAGGTCAACAACATTTGATCTGTTGCTCGAAAGTATATATCTTAAACAGTGCAACATAACACCCAGATTACCATTAGTGATGTATATAACAGTAGTTGAACAGAATGTTAACAAGGTGTAGCTCTGTCAGTGACAGAGCAAGCAAATATAGTCACACACAAGGTATCCAACAATGCAGAAAAAAAGAGGATTCAGACCAACTTTGGAACTCCTGAAGACCAATCAAAGGCCTCCTTTCCTCTCTTTATTTAAACATTTCGTTGCCCGCTTCCACATCAGTTTTGAGTAGGTATTTCTTATCTACAATGGTAAGTAGAATGGAGAAGGAAAGTCTCAAGTAAATGAAATTTGGAACTATTTTTTGCTCTAGATGGTGATAGAGCAAGAAACGAGGTTTTCTGTGTCAATTTCTACTTTTATGTGAAAAACTCTTAAAACAACTGATTTCTCATTAGGGTTTCTGTCTGTATGATTATACTTTTAGCAGATGAAATTATATTGATGTCCATCTTTACCAAGGGACTGTTTAGATTGACTTTTTTAGTGCTTAAAAACATTTTTATTTTCTTTTAAAAACACCTTTTAAGCATTTAGAAGCTAATACAAATAGGCCCGAAGTCTATAACCAAGAAGTTCATTCATGGGGAATAGAGCCATAAATTTTTGTTGAAAATTTTTTCTGATACAATTTTGAATCATGCAGCTAAAGTGAGAGATCCTCATAGTTTAAGGACACAATGTATCTTGTCTGCGGCATCACCATCAACATCTACTGGAACAGCTACAACATTCAATGTGGATCGACTTAAGTTGCCTCCTTTTGATACTAACACTGACTCAGTCTCCGTGGAAAGACTAAGATCATATTTAGGTGCAGTTGAATCGAGTCTAGCCTCAACACTTCTTACCAGTGAGGAGGCTACAATAGCAGCTGCCGCAGCTGAAGCTGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAGGGATGCAGTTCTTCTGGCTAACAATAGCAACTCTTCCCGAGCAGGAACAAAATCTCAATCTTCTTCCAAACCTGATGCTTTACATTTCAAATGGGCTCAGTTTATGGAATCGGAAAGGGCTGATATAATAGGAGAACCAGTTGGAGTTAATAATCGCCCTGTGGAAGGCGATGCTTTGCAAACCAGCACAACAGAATCTGATGATATGGAGCCAACATCCGAAGAACTTGAACTTTTACAGGATGAACTCTCTGAGAGTATAACTGTAAGGTCAAAGCGTCAAACGGAAAGGAAAGCCAGAAGAACTAGAGCAGCAGAGAAGACTGCTACTACTAGTGTAGTGTCATTGAAATCCGGTTCTAGCAGCCGGAAGAAGCGTAATTCTATACAAGAAGTGGACTACTCTGACCCATTGCGTTATTTAAGAGCAACTACTAGCACTTCTAGACTTCTTACTGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGTTCGATTGTCAGTCATTTAATTATTTCCTACAATCATGTCTTTCTAACAGGATCGAGACCATATTGCATTTAGAAACTTAACATTAACATTTAACTCAATTTTACAGTCGATACAAAATCTGGATTTGTTTGTTTGTAACCAAGAAACATTATTTCAAATAACTTTACAATCCATCTCAATTGGATAAAATTTTCAAGATAAATTAAGAATAGAATAGGTGAAGCAAATGAAGTGGATAATGGATACACTCAATCCATAAAAAATGAATTTCACTTTATCCTATTTTCTGTAAAACCTAGCAGTTCTCTTCAATTTCGGAGAAGATATGCAGACAAACCTCGGTGAAAGGGCCCACCCATGGCAGTATTATGTTCGTTAAAACTTCCAATAAGTTGTCTGATCCAGCTTCTTAATAGAATCTAATTGTAGTTTCGTTTCTTTAATTTGATTCTCTAATGGAATGCATAGATTAATGATATTGATCAACAACAATGGCTCGTTAGATGGTGATTCTGGGTTAATTTCAATATCCTGATTTATTCCTTATATTCCATGTTTTTTGTTTGGTTACTGCCTTATATTCCATGTTTTTTGTTTGGTTACTGACATTTGTTCCAAATATTTCCTAATCCAGGACCTACTGAAACTGGAGCGGCTCCAGGAGGAGCTTGCAGAACGGTATGGGAATGAGCCAACCTTTGCACAATGGGCAGCTGCTGCTGGAGTCAATCAGAGGACACTGAGGAAGCGTCTAAATTATGGTACTCTTTGTAAAGACAAAATGATAAAAAGCAATATTCGTCTTGTCATATCGATTGCAAAAAATTATCAGGGAGCTGGGATGAATCTCCAAGATCTAGTTCAGGTACTTTTGCATTACTGCAGACCAGCCAAAATGCTTATGAATGGAAACTGAAATAATGAATATCTTGTTTTGGTTTCGAATGACTCATTGCTTGTGTTGTAACGTGCAGGAAGGGTGTCGAGGCCTTGTACGGGGTGCGGAAAAGTTTGATGCTTCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAGGCGGTTCGAAAGTCCCTTTCTGATCAGTCTCGGACTATTCGCTTGCCTGTATGTTTCTTTTTTCCAGCGTTTGTTTAGTAAAAAACGATAAATTGCTTTGTCAAATTCATTATAGAACTATACAAATGAGAAAAAAATATAGCCTATGAAAAGTCCCTTTGAACTTGTTAATTGAAGAGATTTCATTGCTCACACTTTGCCAATATCAACGTTGATGAAATGGCAGTTTCACATGGTGGAAGCAACTTATAGGGTGAAGGAGGCTAGAAAGCAATTATATAGTGAAAATGGAAGACATCCTGATGATGAAGAAATTGCTGAAGCAGCCGGGCTGTCGATGAAGAGGCTTGCTGCAGTACTAATGACTCCTAAAGCACCCAGATCCTTGGAGCAGAAAATCGGAATAAACCAAAATCTCAAACCATCGGTCCGTCTTATTGCCTACTCGGTTTCTTTTCCTCTTTTTTCTCATTGCAATATCACCATCTTTGACCTATTTGATTCTCATACTCTTTTCCAGGAAGTCATTTCTGACCCGGAAGCGGAAACTGCTGAAGATATGTTGATAAAACAATTCATGAAGCAGGACCTTGAAAAGGTACTCGACTCCCTTAACCCGAGAGAGAGACAAGTAATTAGATGGAGGTTTGGGATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAATCATGTGCATTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGA

mRNA sequence

GGCAGAGTGGCAGTCTCTTCAAGTCTTATCCATTGTTTTATCAACAAAGCCTCCAAATGCCAATTTACCAACACAAGTTTTCCTCTCCACTCCTCTTCTCTCAACCCACTCTCCATTGCTTCTTCTTCTTCTTCTTCATCAATCAACTCAATTCCCCATCTCTGAAACCCTTCTTCAATCTTCATTTTTCAAGCTCCCAATGAAACCCTTTTCTTATGCACCACATTCCTGCCTCTTCCCCTTCTGGGTCTCCCACGGACTTCAATTTTGAATGCCTTCATTTATGTCCGCCATAGTTGCAGAGTAGCAGAAACCCATTTGGAGTACGAAGAAGAAGAACATCAACAGGGCGATGTCTTGTTTACTTCCCCAATTCAAGTGCCATCCTGAAACATTCTCAATCCAATTCAAGACCGCGGCTAATTATTCTCCCCATCACAGCTTTCTTCCCACTGCCAATTCCAGTTACACTAAAGTGAGAGATCCTCATAGTTTAAGGACACAATGTATCTTGTCTGCGGCATCACCATCAACATCTACTGGAACAGCTACAACATTCAATGTGGATCGACTTAAGTTGCCTCCTTTTGATACTAACACTGACTCAGTCTCCGTGGAAAGACTAAGATCATATTTAGGTGCAGTTGAATCGAGTCTAGCCTCAACACTTCTTACCAGTGAGGAGGCTACAATAGCAGCTGCCGCAGCTGAAGCTGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAGGGATGCAGTTCTTCTGGCTAACAATAGCAACTCTTCCCGAGCAGGAACAAAATCTCAATCTTCTTCCAAACCTGATGCTTTACATTTCAAATGGGCTCAGTTTATGGAATCGGAAAGGGCTGATATAATAGGAGAACCAGTTGGAGTTAATAATCGCCCTGTGGAAGGCGATGCTTTGCAAACCAGCACAACAGAATCTGATGATATGGAGCCAACATCCGAAGAACTTGAACTTTTACAGGATGAACTCTCTGAGAGTATAACTGTAAGGTCAAAGCGTCAAACGGAAAGGAAAGCCAGAAGAACTAGAGCAGCAGAGAAGACTGCTACTACTAGTGTAGTGTCATTGAAATCCGGTTCTAGCAGCCGGAAGAAGCGTAATTCTATACAAGAAGTGGACTACTCTGACCCATTGCGTTATTTAAGAGCAACTACTAGCACTTCTAGACTTCTTACTGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGACCTACTGAAACTGGAGCGGCTCCAGGAGGAGCTTGCAGAACGGTATGGGAATGAGCCAACCTTTGCACAATGGGCAGCTGCTGCTGGAGTCAATCAGAGGACACTGAGGAAGCGTCTAAATTATGGTACTCTTTGTAAAGACAAAATGATAAAAAGCAATATTCGTCTTGTCATATCGATTGCAAAAAATTATCAGGGAGCTGGGATGAATCTCCAAGATCTAGTTCAGGAAGGGTGTCGAGGCCTTGTACGGGGTGCGGAAAAGTTTGATGCTTCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAGGCGGTTCGAAAGTCCCTTTCTGATCAGTCTCGGACTATTCGCTTGCCTTTTCACATGGTGGAAGCAACTTATAGGGTGAAGGAGGCTAGAAAGCAATTATATAGTGAAAATGGAAGACATCCTGATGATGAAGAAATTGCTGAAGCAGCCGGGCTGTCGATGAAGAGGCTTGCTGCAGTACTAATGACTCCTAAAGCACCCAGATCCTTGGAGCAGAAAATCGGAATAAACCAAAATCTCAAACCATCGGTCCGTCTTATTGCCTACTCGGTTTCTTTTCCTCTTTTTTCTCATTGCAATATCACCATCTTTGACCTATTTGATTCTCATACTCTTTTCCAGGAAGTCATTTCTGACCCGGAAGCGGAAACTGCTGAAGATATGTTGATAAAACAATTCATGAAGCAGGACCTTGAAAAGGTACTCGACTCCCTTAACCCGAGAGAGAGACAAGTAATTAGATGGAGGTTTGGGATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAATCATGTGCATTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGA

Coding sequence (CDS)

ATGTCTTGTTTACTTCCCCAATTCAAGTGCCATCCTGAAACATTCTCAATCCAATTCAAGACCGCGGCTAATTATTCTCCCCATCACAGCTTTCTTCCCACTGCCAATTCCAGTTACACTAAAGTGAGAGATCCTCATAGTTTAAGGACACAATGTATCTTGTCTGCGGCATCACCATCAACATCTACTGGAACAGCTACAACATTCAATGTGGATCGACTTAAGTTGCCTCCTTTTGATACTAACACTGACTCAGTCTCCGTGGAAAGACTAAGATCATATTTAGGTGCAGTTGAATCGAGTCTAGCCTCAACACTTCTTACCAGTGAGGAGGCTACAATAGCAGCTGCCGCAGCTGAAGCTGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAGGGATGCAGTTCTTCTGGCTAACAATAGCAACTCTTCCCGAGCAGGAACAAAATCTCAATCTTCTTCCAAACCTGATGCTTTACATTTCAAATGGGCTCAGTTTATGGAATCGGAAAGGGCTGATATAATAGGAGAACCAGTTGGAGTTAATAATCGCCCTGTGGAAGGCGATGCTTTGCAAACCAGCACAACAGAATCTGATGATATGGAGCCAACATCCGAAGAACTTGAACTTTTACAGGATGAACTCTCTGAGAGTATAACTGTAAGGTCAAAGCGTCAAACGGAAAGGAAAGCCAGAAGAACTAGAGCAGCAGAGAAGACTGCTACTACTAGTGTAGTGTCATTGAAATCCGGTTCTAGCAGCCGGAAGAAGCGTAATTCTATACAAGAAGTGGACTACTCTGACCCATTGCGTTATTTAAGAGCAACTACTAGCACTTCTAGACTTCTTACTGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGACCTACTGAAACTGGAGCGGCTCCAGGAGGAGCTTGCAGAACGGTATGGGAATGAGCCAACCTTTGCACAATGGGCAGCTGCTGCTGGAGTCAATCAGAGGACACTGAGGAAGCGTCTAAATTATGGTACTCTTTGTAAAGACAAAATGATAAAAAGCAATATTCGTCTTGTCATATCGATTGCAAAAAATTATCAGGGAGCTGGGATGAATCTCCAAGATCTAGTTCAGGAAGGGTGTCGAGGCCTTGTACGGGGTGCGGAAAAGTTTGATGCTTCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAGGCGGTTCGAAAGTCCCTTTCTGATCAGTCTCGGACTATTCGCTTGCCTTTTCACATGGTGGAAGCAACTTATAGGGTGAAGGAGGCTAGAAAGCAATTATATAGTGAAAATGGAAGACATCCTGATGATGAAGAAATTGCTGAAGCAGCCGGGCTGTCGATGAAGAGGCTTGCTGCAGTACTAATGACTCCTAAAGCACCCAGATCCTTGGAGCAGAAAATCGGAATAAACCAAAATCTCAAACCATCGGTCCGTCTTATTGCCTACTCGGTTTCTTTTCCTCTTTTTTCTCATTGCAATATCACCATCTTTGACCTATTTGATTCTCATACTCTTTTCCAGGAAGTCATTTCTGACCCGGAAGCGGAAACTGCTGAAGATATGTTGATAAAACAATTCATGAAGCAGGACCTTGAAAAGGTACTCGACTCCCTTAACCCGAGAGAGAGACAAGTAATTAGATGGAGGTTTGGGATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAATCATGTGCATTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGA

Protein sequence

MSCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPSTSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESERADIIGEPVGVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAEKTATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSVRLIAYSVSFPLFSHCNITIFDLFDSHTLFQEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS

Homology

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BLAST of CmUC06G108670 vs. NCBI nr
Match: XP_038875580.1 (RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida])

HSP 1 Score: 1029.6 bits (2661), Expect = 1.1e-296
Identity = 561/613 (91.52%), Postives = 570/613 (92.99%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSP-HHSFLPTANSSYTKVRDPHSLRTQCILSAASP 60
           MSCLLPQFKCHPETFSIQFKTAANY+P HH+FLPTANSSYTKVRDPHSLRTQCILSAASP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANYAPHHHTFLPTANSSYTKVRDPHSLRTQCILSAASP 60

Query: 61  STSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAA 120
            TSTGTATT NVDRL LPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAA
Sbjct: 61  PTSTGTATTLNVDRLMLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAA 120

Query: 121 EAVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESERADIIGEP 180
           EAV LAKAAVKVARDA LLANNSNSSRAG KS+SS +PDALHFKWAQFMESERADIIGEP
Sbjct: 121 EAVALAKAAVKVARDAALLANNSNSSRAGEKSRSSPRPDALHFKWAQFMESERADIIGEP 180

Query: 181 VGVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAE 240
           VGVNNRP+E DALQ STT+SDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAE
Sbjct: 181 VGVNNRPMETDALQPSTTKSDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAE 240

Query: 241 KTATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDL 300
           KTA TSVVSLKSGSSSRKKRNS+QEVDYSDPLRYLRATTSTSRLLTA EELELSEGIQDL
Sbjct: 241 KTA-TSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTAAEELELSEGIQDL 300

Query: 301 LKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIA 360
           LKLERLQEELA+RYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIA
Sbjct: 301 LKLERLQEELADRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIA 360

Query: 361 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 420
           KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR
Sbjct: 361 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 420

Query: 421 LPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKI 480
           LPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKI
Sbjct: 421 LPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKI 480

Query: 481 GINQNLKPSVRLIAYSVSFPLFSHCNITIFDLFDSHTLFQEVISDPEAETAEDMLIKQFM 540
           GINQNLKPS                               EVISDPEAETAEDMLIKQFM
Sbjct: 481 GINQNLKPS-------------------------------EVISDPEAETAEDMLIKQFM 540

Query: 541 KQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKN 600
           KQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKN
Sbjct: 541 KQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKN 581

Query: 601 KKRTKHLQQYLMS 613
           KKRTKHLQQYL+S
Sbjct: 601 KKRTKHLQQYLIS 581

[Close]

BLAST of CmUC06G108670 vs. NCBI nr
Match: XP_004154029.1 (RNA polymerase sigma factor sigB [Cucumis sativus] >KGN46260.1 hypothetical protein Csa_004860 [Cucumis sativus])

HSP 1 Score: 1018.8 bits (2633), Expect = 1.9e-293
Identity = 553/612 (90.36%), Postives = 564/612 (92.16%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPS 60
           MSCLLPQFKCHPETFSIQFKTAANYS HHSFLPTA SSYTKVRDPHSLRTQCILSAASP 
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATT +VDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEA+IAAAAAE
Sbjct: 61  TSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEASIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDA LLANN NSSRAGTKSQSS KPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+ STTESDDMEPTSEELELLQDELSESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300
           T  TSV+S KSGSSSRKKRNS+QEVDYSDPLRYLRATT+TSRLLTATEELELSEGIQDLL
Sbjct: 241 T-VTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQDLL 300

Query: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360
           KLERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK
Sbjct: 301 KLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360

Query: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 420
           NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRL
Sbjct: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRL 420

Query: 421 PFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480
           PFHMVEATYRVKEARKQL  ENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG
Sbjct: 421 PFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480

Query: 481 INQNLKPSVRLIAYSVSFPLFSHCNITIFDLFDSHTLFQEVISDPEAETAEDMLIKQFMK 540
           INQNLKPS                               EVISDPEAET EDMLIKQFMK
Sbjct: 481 INQNLKPS-------------------------------EVISDPEAETCEDMLIKQFMK 540

Query: 541 QDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNK 600
           QDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNK
Sbjct: 541 QDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNK 580

Query: 601 KRTKHLQQYLMS 613
           KRTKHLQQY+MS
Sbjct: 601 KRTKHLQQYVMS 580

[Close]

BLAST of CmUC06G108670 vs. NCBI nr
Match: XP_008460092.1 (PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo])

HSP 1 Score: 1018.1 bits (2631), Expect = 3.2e-293
Identity = 554/612 (90.52%), Postives = 564/612 (92.16%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPS 60
           MSCLLPQFKCHPETFSIQFKTAAN S HHSF+PTA SSYTKVRDPHSLRTQCILSAASP 
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATT NVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDA LLANN NSSRAGTKSQ S KPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+ STTESDD+EPTS+ELELLQDELSESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300
           T  TSVV  KSGSSSRKKR+S+QEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL
Sbjct: 241 T-VTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300

Query: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360
           KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK
Sbjct: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360

Query: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 420
           NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRL
Sbjct: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRL 420

Query: 421 PFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480
           PFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG
Sbjct: 421 PFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480

Query: 481 INQNLKPSVRLIAYSVSFPLFSHCNITIFDLFDSHTLFQEVISDPEAETAEDMLIKQFMK 540
           INQNLKPS                               EVISDPEAETAEDMLIKQFMK
Sbjct: 481 INQNLKPS-------------------------------EVISDPEAETAEDMLIKQFMK 540

Query: 541 QDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNK 600
           QDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNK
Sbjct: 541 QDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNK 580

Query: 601 KRTKHLQQYLMS 613
           KRTKHLQQYLMS
Sbjct: 601 KRTKHLQQYLMS 580

[Close]

BLAST of CmUC06G108670 vs. NCBI nr
Match: XP_022155781.1 (RNA polymerase sigma factor sigB [Momordica charantia])

HSP 1 Score: 979.5 bits (2531), Expect = 1.3e-281
Identity = 537/619 (86.75%), Postives = 552/619 (89.18%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFK-------TAANYSPHHSFLPTANSSYTKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFK       T ANYS HH+FLPTANSS TKVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60

Query: 61  LSAASPSTSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAT 120
           LSAASPSTSTGTATTFNV+RLKLPP D NTDS+S ERLRSYL AVESS ASTLLTSEEAT
Sbjct: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120

Query: 121 IAAAAAEAVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESERA 180
           IAAAAAEAVTLAKAAVKVA+DA LL NNSNSS+ G KSQSSSK DALHFKW QFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180

Query: 181 DIIGEPVGVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKAR 240
           DIIG PVGVNNRP EGDALQ  T ESD  +PT+EELELLQDELS +I VRS+RQTER+A+
Sbjct: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAK 240

Query: 241 RTRAAEKTATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELS 300
           RTRAAEK A TSVVS+KSGSSSRKKRNS+QEVDYSDPLRYLRATTS SRLLTATEELELS
Sbjct: 241 RTRAAEKIA-TSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELS 300

Query: 301 EGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIR 360
           EGIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIR
Sbjct: 301 EGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIR 360

Query: 361 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 420
           LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD
Sbjct: 361 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 420

Query: 421 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPR 480
           QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPR
Sbjct: 421 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPR 480

Query: 481 SLEQKIGINQNLKPSVRLIAYSVSFPLFSHCNITIFDLFDSHTLFQEVISDPEAETAEDM 540
           SLEQKIGINQNLKPS                               EVISDPEAET+ED+
Sbjct: 481 SLEQKIGINQNLKPS-------------------------------EVISDPEAETSEDL 540

Query: 541 LIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCA 600
           LIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCA
Sbjct: 541 LIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCA 586

Query: 601 FRKLKNKKRTKHLQQYLMS 613
           FRKLKNKKRTKHLQQYLMS
Sbjct: 601 FRKLKNKKRTKHLQQYLMS 586

[Close]

BLAST of CmUC06G108670 vs. NCBI nr
Match: XP_008460093.1 (PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Cucumis melo])

HSP 1 Score: 974.2 bits (2517), Expect = 5.3e-280
Identity = 537/612 (87.75%), Postives = 547/612 (89.38%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPS 60
           MSCLLPQFKCHPETFSIQFKTAAN S HHSF+PTA SSYT                 SP 
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYT-----------------SPP 60

Query: 61  TSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATT NVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDA LLANN NSSRAGTKSQ S KPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+ STTESDD+EPTS+ELELLQDELSESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300
           T  TSVV  KSGSSSRKKR+S+QEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL
Sbjct: 241 T-VTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300

Query: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360
           KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK
Sbjct: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360

Query: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 420
           NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRL
Sbjct: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRL 420

Query: 421 PFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480
           PFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG
Sbjct: 421 PFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480

Query: 481 INQNLKPSVRLIAYSVSFPLFSHCNITIFDLFDSHTLFQEVISDPEAETAEDMLIKQFMK 540
           INQNLKPS                               EVISDPEAETAEDMLIKQFMK
Sbjct: 481 INQNLKPS-------------------------------EVISDPEAETAEDMLIKQFMK 540

Query: 541 QDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNK 600
           QDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNK
Sbjct: 541 QDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNK 563

Query: 601 KRTKHLQQYLMS 613
           KRTKHLQQYLMS
Sbjct: 601 KRTKHLQQYLMS 563

[Close]

BLAST of CmUC06G108670 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 639.4 bits (1648), Expect = 4.1e-182
Identity = 379/624 (60.74%), Postives = 459/624 (73.56%), Query Frame = 0


Query: 2   SCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPST 61
           SCLLPQFKC P++FSI F+T+   +P H+            +     + QC +S  SP+ 
Sbjct: 3   SCLLPQFKCPPDSFSIHFRTSF-CAPKHN------------KGSVFFQPQCAVS-TSPAL 62

Query: 62  STGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGA---------VESSLASTLLTSEEA 121
            T   +  +V +L+LP FDT++DS+  +R  +Y            +E+  + TLLTS+EA
Sbjct: 63  LT---SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEA 122

Query: 122 TIAAAAAEAVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESER 181
            + AAAAEAV LA+AAVKVA+DA L  N++N     T   +SS  D    KW QF E ER
Sbjct: 123 VVVAAAAEAVALARAAVKVAKDATLFKNSNN-----TNLLTSSTADK-RSKWDQFTEKER 182

Query: 182 ADIIGEPVGVNNRPVEGDALQTSTTESD---DME-PTSEELELLQDELSESITVRSKRQT 241
           A I+G  + V++  +  D +  S +  +   D+E    EE+ELL+++ S S+ VRS RQT
Sbjct: 183 AGILGH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQT 242

Query: 242 ERKARRTRAAEKTATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATE 301
           ERKARR +  EKTA + + S+K+GSS +KKR   QEVD++DPLRYLR TTS+S+LLT  E
Sbjct: 243 ERKARRAKGLEKTA-SGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVRE 302

Query: 302 ELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMI 361
           E ELS GIQDLLKLERLQ EL ER G +PTFAQWA+AAGV+Q++LR+R+++GTLCKDKMI
Sbjct: 303 EHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMI 362

Query: 362 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 421
           KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVR
Sbjct: 363 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVR 422

Query: 422 KSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMT 481
           KSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EEIAEA GLSMKRL AVL++
Sbjct: 423 KSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLS 482

Query: 482 PKAPRSLEQKIGINQNLKPSVRLIAYSVSFPLFSHCNITIFDLFDSHTLFQEVISDPEAE 541
           PK PRSL+QKIG+NQNLKPS                               EVI+DPEA 
Sbjct: 483 PKPPRSLDQKIGMNQNLKPS-------------------------------EVIADPEAV 542

Query: 542 TAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQ 601
           T+ED+LIK+FM+QDL+KVLDSL  RE+QVIRWRFGMEDGRMKTLQEIGE+MGVSRER+RQ
Sbjct: 543 TSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQ 570

Query: 602 IESCAFRKLKNKKRTKHLQQYLMS 613
           IES AFRKLKNKKR  HLQQYL++
Sbjct: 603 IESSAFRKLKNKKRNNHLQQYLVA 570

[Close]

BLAST of CmUC06G108670 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 7.0e-73
Identity = 155/363 (42.70%), Postives = 226/363 (62.26%), Query Frame = 0


Query: 250 KSGSSSRKKRNSIQEVDY--SDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQE 309
           KSG +++ +R +  +  +   D +R         RLL A EE+EL+  I DLL+LER++E
Sbjct: 59  KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118

Query: 310 ELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGM 369
            L+E+   +P  ++WA A  +     R RL+ G   KDKM++SN+RLV+SIAK Y   G+
Sbjct: 119 RLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178

Query: 370 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 429
           + QDL+QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E 
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238

Query: 430 TYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKP 489
             R+K+  K L  E GR P +EEIA    +++++L  +  + + P SLE  IG  ++ + 
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR- 298

Query: 490 SVRLIAYSVSFPLFSHCNITIFDLFDSHTLFQEVISDPEAETAEDMLIKQFMKQDLEKVL 549
                               + D  +S           + ET ED + K  +++DLEKVL
Sbjct: 299 --------------------LGDFIES-----------DGETPEDQVSKNLLREDLEKVL 358

Query: 550 DSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQ 609
           DSL+PRER V+R R+G++DGRMKTL+EIG+I  V+RERIRQIE+ A RKL++  R   L+
Sbjct: 359 DSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLK 389

Query: 610 QYL 611
           +Y+
Sbjct: 419 EYI 389

[Close]

BLAST of CmUC06G108670 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 261.5 bits (667), Expect = 2.3e-68
Identity = 163/417 (39.09%), Postives = 243/417 (58.27%), Query Frame = 0


Query: 206 SEELELLQDELSESITVRSKRQTERKARRTRAAEKTATTSVVSL------------KSGS 265
           ++  ELL   L  + T ++KR + +KA  T A  + ATT   +             +   
Sbjct: 17  TQATELLDPALKPAET-KAKRSSRKKA--TTAVVEPATTIAPTADVDAIDDEDSVGEDED 76

Query: 266 SSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERY 325
           ++ K +  +++    D +R         RLL A EE+EL+  I DLL LER+++EL E+ 
Sbjct: 77  AAAKAKAKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQL 136

Query: 326 GNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLV 385
              P+ A+WAAA        R+RL  G   KDKM++SN+RLV+SIAK Y   G++ QDL+
Sbjct: 137 DRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 196

Query: 386 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 445
           QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   R+K+
Sbjct: 197 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 256

Query: 446 ARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSVRLIA 505
             K L  E GR P +EEIA    +++++L  +  + + P SLE  IG  ++ +       
Sbjct: 257 TTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR------- 316

Query: 506 YSVSFPLFSHCNITIFDLFDSHTLFQEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPR 565
                         + D  ++           + ET ED + K  +++DLE VL +L+PR
Sbjct: 317 --------------LGDFIEA-----------DGETPEDEVAKNLLREDLEGVLSTLSPR 376

Query: 566 ERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL 611
           ER V+R R+G++DGRMKTL+EIG++  V+RERIRQIE+ A RKL++  R   L++Y+
Sbjct: 377 ERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398

[Close]

BLAST of CmUC06G108670 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.1e-62
Identity = 147/388 (37.89%), Postives = 219/388 (56.44%), Query Frame = 0


Query: 222 VRSKRQTERKARRTRAAEKTATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTS 281
           VRSKRQ ER+A+  RA +         +   +S++KK    Q  D  D L+       T 
Sbjct: 188 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK--QGADNDDALQLFLWGPETK 247

Query: 282 RLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT 341
           +LLTA EE EL   IQ LLKLE+++ +L  + G EPT  +WA A G++   L+  ++ G 
Sbjct: 248 QLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGR 307

Query: 342 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 401
             ++K+I +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF    G +F+TYA+W
Sbjct: 308 SSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYW 367

Query: 402 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKR 461
           WI+Q++RKS+   SRTIRLP ++     +V EARK    E    P  EE+A   G+S ++
Sbjct: 368 WIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEK 427

Query: 462 LAAVLMTPKAPRSLEQKIGINQNLKPSVRLIAYSVSFPLFSHCNITIFDLFDSHTLFQEV 521
           L  +L   + P S++Q                     P++S          D  T FQE+
Sbjct: 428 LDKLLYNTRTPLSMQQ---------------------PIWS----------DQDTTFQEI 487

Query: 522 ISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGV 581
             D   ET    + KQ M+  +  +L+ L+P+ER++I+ RFG++ G+ ++L EIGEI G+
Sbjct: 488 TPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGL 542

Query: 582 SRERIRQIESCAFRKLKNKKRTKHLQQY 610
           S+ER+RQ+ES A  +LK    +  L  Y
Sbjct: 548 SKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]

BLAST of CmUC06G108670 vs. ExPASy Swiss-Prot
Match: P74565 (RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sigA PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.7e-61
Identity = 144/398 (36.18%), Postives = 218/398 (54.77%), Query Frame = 0


Query: 258 KRNSIQEVDYS-DPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNE 317
           +++++++  Y+ D +R         RLL A EE+EL+  I DLL+LE +++ L  +   +
Sbjct: 59  RKDAVKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARQIADLLELELIRDNLTLQLERQ 118

Query: 318 PTFA--------------------------------------------QWAAAAGVNQRT 377
           P+                                              +W+     N   
Sbjct: 119 PSELEWGKQVWKLETAKQRLVGDKKKEPKKKDIDSYLANPDNELSLENEWSQQPNKNFAA 178

Query: 378 LRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 437
            R+RL      KDKM++SN+RLV+SIAK Y   G++ QDL+QEG  GL+R AEKFD  KG
Sbjct: 179 FRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKG 238

Query: 438 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIA 497
           +KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   R+K+  K L  E  R P +EEIA
Sbjct: 239 YKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIA 298

Query: 498 EAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSVRLIAYSVSFPLFSHCNITIFDLF 557
           E   +++++L  +  + + P SLE  IG  ++ +                     + D  
Sbjct: 299 EKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR---------------------LGDFI 358

Query: 558 DSHTLFQEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL 611
           ++           + ET ED + K  +++DLE VLD+L+PRER V+R R+G++DGRMKTL
Sbjct: 359 EA-----------DGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTL 418

[Close]

BLAST of CmUC06G108670 vs. ExPASy TrEMBL
Match: A0A0A0K917 (RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G078550 PE=3 SV=1)

HSP 1 Score: 1018.8 bits (2633), Expect = 9.2e-294
Identity = 553/612 (90.36%), Postives = 564/612 (92.16%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPS 60
           MSCLLPQFKCHPETFSIQFKTAANYS HHSFLPTA SSYTKVRDPHSLRTQCILSAASP 
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATT +VDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEA+IAAAAAE
Sbjct: 61  TSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEASIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDA LLANN NSSRAGTKSQSS KPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+ STTESDDMEPTSEELELLQDELSESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300
           T  TSV+S KSGSSSRKKRNS+QEVDYSDPLRYLRATT+TSRLLTATEELELSEGIQDLL
Sbjct: 241 T-VTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQDLL 300

Query: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360
           KLERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK
Sbjct: 301 KLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360

Query: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 420
           NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRL
Sbjct: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRL 420

Query: 421 PFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480
           PFHMVEATYRVKEARKQL  ENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG
Sbjct: 421 PFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480

Query: 481 INQNLKPSVRLIAYSVSFPLFSHCNITIFDLFDSHTLFQEVISDPEAETAEDMLIKQFMK 540
           INQNLKPS                               EVISDPEAET EDMLIKQFMK
Sbjct: 481 INQNLKPS-------------------------------EVISDPEAETCEDMLIKQFMK 540

Query: 541 QDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNK 600
           QDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNK
Sbjct: 541 QDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNK 580

Query: 601 KRTKHLQQYLMS 613
           KRTKHLQQY+MS
Sbjct: 601 KRTKHLQQYVMS 580

[Close]

BLAST of CmUC06G108670 vs. ExPASy TrEMBL
Match: A0A1S3CD00 (RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1)

HSP 1 Score: 1018.1 bits (2631), Expect = 1.6e-293
Identity = 554/612 (90.52%), Postives = 564/612 (92.16%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPS 60
           MSCLLPQFKCHPETFSIQFKTAAN S HHSF+PTA SSYTKVRDPHSLRTQCILSAASP 
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATT NVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDA LLANN NSSRAGTKSQ S KPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+ STTESDD+EPTS+ELELLQDELSESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300
           T  TSVV  KSGSSSRKKR+S+QEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL
Sbjct: 241 T-VTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300

Query: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360
           KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK
Sbjct: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360

Query: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 420
           NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRL
Sbjct: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRL 420

Query: 421 PFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480
           PFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG
Sbjct: 421 PFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480

Query: 481 INQNLKPSVRLIAYSVSFPLFSHCNITIFDLFDSHTLFQEVISDPEAETAEDMLIKQFMK 540
           INQNLKPS                               EVISDPEAETAEDMLIKQFMK
Sbjct: 481 INQNLKPS-------------------------------EVISDPEAETAEDMLIKQFMK 540

Query: 541 QDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNK 600
           QDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNK
Sbjct: 541 QDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNK 580

Query: 601 KRTKHLQQYLMS 613
           KRTKHLQQYLMS
Sbjct: 601 KRTKHLQQYLMS 580

[Close]

BLAST of CmUC06G108670 vs. ExPASy TrEMBL
Match: A0A6J1DSR7 (RNA polymerase sigma factor OS=Momordica charantia OX=3673 GN=LOC111022820 PE=3 SV=1)

HSP 1 Score: 979.5 bits (2531), Expect = 6.2e-282
Identity = 537/619 (86.75%), Postives = 552/619 (89.18%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFK-------TAANYSPHHSFLPTANSSYTKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFK       T ANYS HH+FLPTANSS TKVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60

Query: 61  LSAASPSTSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAT 120
           LSAASPSTSTGTATTFNV+RLKLPP D NTDS+S ERLRSYL AVESS ASTLLTSEEAT
Sbjct: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120

Query: 121 IAAAAAEAVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESERA 180
           IAAAAAEAVTLAKAAVKVA+DA LL NNSNSS+ G KSQSSSK DALHFKW QFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180

Query: 181 DIIGEPVGVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKAR 240
           DIIG PVGVNNRP EGDALQ  T ESD  +PT+EELELLQDELS +I VRS+RQTER+A+
Sbjct: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAK 240

Query: 241 RTRAAEKTATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELS 300
           RTRAAEK A TSVVS+KSGSSSRKKRNS+QEVDYSDPLRYLRATTS SRLLTATEELELS
Sbjct: 241 RTRAAEKIA-TSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELS 300

Query: 301 EGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIR 360
           EGIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIR
Sbjct: 301 EGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIR 360

Query: 361 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 420
           LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD
Sbjct: 361 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 420

Query: 421 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPR 480
           QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPR
Sbjct: 421 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPR 480

Query: 481 SLEQKIGINQNLKPSVRLIAYSVSFPLFSHCNITIFDLFDSHTLFQEVISDPEAETAEDM 540
           SLEQKIGINQNLKPS                               EVISDPEAET+ED+
Sbjct: 481 SLEQKIGINQNLKPS-------------------------------EVISDPEAETSEDL 540

Query: 541 LIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCA 600
           LIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCA
Sbjct: 541 LIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCA 586

Query: 601 FRKLKNKKRTKHLQQYLMS 613
           FRKLKNKKRTKHLQQYLMS
Sbjct: 601 FRKLKNKKRTKHLQQYLMS 586

[Close]

BLAST of CmUC06G108670 vs. ExPASy TrEMBL
Match: A0A1S3CBA5 (RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1)

HSP 1 Score: 974.2 bits (2517), Expect = 2.6e-280
Identity = 537/612 (87.75%), Postives = 547/612 (89.38%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPS 60
           MSCLLPQFKCHPETFSIQFKTAAN S HHSF+PTA SSYT                 SP 
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYT-----------------SPP 60

Query: 61  TSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATT NVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDA LLANN NSSRAGTKSQ S KPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+ STTESDD+EPTS+ELELLQDELSESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300
           T  TSVV  KSGSSSRKKR+S+QEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL
Sbjct: 241 T-VTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300

Query: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360
           KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK
Sbjct: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360

Query: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 420
           NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRL
Sbjct: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRL 420

Query: 421 PFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480
           PFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG
Sbjct: 421 PFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480

Query: 481 INQNLKPSVRLIAYSVSFPLFSHCNITIFDLFDSHTLFQEVISDPEAETAEDMLIKQFMK 540
           INQNLKPS                               EVISDPEAETAEDMLIKQFMK
Sbjct: 481 INQNLKPS-------------------------------EVISDPEAETAEDMLIKQFMK 540

Query: 541 QDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNK 600
           QDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNK
Sbjct: 541 QDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNK 563

Query: 601 KRTKHLQQYLMS 613
           KRTKHLQQYLMS
Sbjct: 601 KRTKHLQQYLMS 563

[Close]

BLAST of CmUC06G108670 vs. ExPASy TrEMBL
Match: A0A5A7T955 (RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00600 PE=3 SV=1)

HSP 1 Score: 961.8 bits (2485), Expect = 1.3e-276
Identity = 524/580 (90.34%), Postives = 532/580 (91.72%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPS 60
           MSCLLPQFKCHPETFSIQFKTAAN S HHSFLPTA SSYTKVRDPHSLRTQCILSAASP 
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATT NVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDA LLANN NSSRAGTKSQ S KPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+ STTESDD+EPTSEELELLQDELSESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300
           T  TSVV  KSGSSSRKKR+S+QEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL
Sbjct: 241 T-VTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300

Query: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360
           KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK
Sbjct: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360

Query: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 420
           NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRL
Sbjct: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRL 420

Query: 421 PFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480
           PFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG
Sbjct: 421 PFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480

Query: 481 INQNLKPSVRLIAYSVSFPLFSHCNITIFDLFDSHTLFQEVISDPEAETAEDMLIKQFMK 540
           INQNLKPS                               EVISDPEAETAEDMLIKQFMK
Sbjct: 481 INQNLKPS-------------------------------EVISDPEAETAEDMLIKQFMK 540

Query: 541 QDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMG 581
           QDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMG
Sbjct: 541 QDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMG 548

[Close]

BLAST of CmUC06G108670 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 639.4 bits (1648), Expect = 2.9e-183
Identity = 379/624 (60.74%), Postives = 459/624 (73.56%), Query Frame = 0


Query: 2   SCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPST 61
           SCLLPQFKC P++FSI F+T+   +P H+            +     + QC +S  SP+ 
Sbjct: 3   SCLLPQFKCPPDSFSIHFRTSF-CAPKHN------------KGSVFFQPQCAVS-TSPAL 62

Query: 62  STGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGA---------VESSLASTLLTSEEA 121
            T   +  +V +L+LP FDT++DS+  +R  +Y            +E+  + TLLTS+EA
Sbjct: 63  LT---SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEA 122

Query: 122 TIAAAAAEAVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESER 181
            + AAAAEAV LA+AAVKVA+DA L  N++N     T   +SS  D    KW QF E ER
Sbjct: 123 VVVAAAAEAVALARAAVKVAKDATLFKNSNN-----TNLLTSSTADK-RSKWDQFTEKER 182

Query: 182 ADIIGEPVGVNNRPVEGDALQTSTTESD---DME-PTSEELELLQDELSESITVRSKRQT 241
           A I+G  + V++  +  D +  S +  +   D+E    EE+ELL+++ S S+ VRS RQT
Sbjct: 183 AGILGH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQT 242

Query: 242 ERKARRTRAAEKTATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATE 301
           ERKARR +  EKTA + + S+K+GSS +KKR   QEVD++DPLRYLR TTS+S+LLT  E
Sbjct: 243 ERKARRAKGLEKTA-SGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVRE 302

Query: 302 ELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMI 361
           E ELS GIQDLLKLERLQ EL ER G +PTFAQWA+AAGV+Q++LR+R+++GTLCKDKMI
Sbjct: 303 EHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMI 362

Query: 362 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 421
           KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVR
Sbjct: 363 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVR 422

Query: 422 KSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMT 481
           KSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EEIAEA GLSMKRL AVL++
Sbjct: 423 KSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLS 482

Query: 482 PKAPRSLEQKIGINQNLKPSVRLIAYSVSFPLFSHCNITIFDLFDSHTLFQEVISDPEAE 541
           PK PRSL+QKIG+NQNLKPS                               EVI+DPEA 
Sbjct: 483 PKPPRSLDQKIGMNQNLKPS-------------------------------EVIADPEAV 542

Query: 542 TAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQ 601
           T+ED+LIK+FM+QDL+KVLDSL  RE+QVIRWRFGMEDGRMKTLQEIGE+MGVSRER+RQ
Sbjct: 543 TSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQ 570

Query: 602 IESCAFRKLKNKKRTKHLQQYLMS 613
           IES AFRKLKNKKR  HLQQYL++
Sbjct: 603 IESSAFRKLKNKKRNNHLQQYLVA 570

[Close]

BLAST of CmUC06G108670 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 242.7 bits (618), Expect = 7.9e-64
Identity = 147/388 (37.89%), Postives = 219/388 (56.44%), Query Frame = 0


Query: 222 VRSKRQTERKARRTRAAEKTATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTS 281
           VRSKRQ ER+A+  RA +         +   +S++KK    Q  D  D L+       T 
Sbjct: 188 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK--QGADNDDALQLFLWGPETK 247

Query: 282 RLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT 341
           +LLTA EE EL   IQ LLKLE+++ +L  + G EPT  +WA A G++   L+  ++ G 
Sbjct: 248 QLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGR 307

Query: 342 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 401
             ++K+I +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF    G +F+TYA+W
Sbjct: 308 SSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYW 367

Query: 402 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKR 461
           WI+Q++RKS+   SRTIRLP ++     +V EARK    E    P  EE+A   G+S ++
Sbjct: 368 WIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEK 427

Query: 462 LAAVLMTPKAPRSLEQKIGINQNLKPSVRLIAYSVSFPLFSHCNITIFDLFDSHTLFQEV 521
           L  +L   + P S++Q                     P++S          D  T FQE+
Sbjct: 428 LDKLLYNTRTPLSMQQ---------------------PIWS----------DQDTTFQEI 487

Query: 522 ISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGV 581
             D   ET    + KQ M+  +  +L+ L+P+ER++I+ RFG++ G+ ++L EIGEI G+
Sbjct: 488 TPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGL 542

Query: 582 SRERIRQIESCAFRKLKNKKRTKHLQQY 610
           S+ER+RQ+ES A  +LK    +  L  Y
Sbjct: 548 SKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]

BLAST of CmUC06G108670 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 201.4 bits (511), Expect = 2.0e-51
Identity = 127/406 (31.28%), Postives = 229/406 (56.40%), Query Frame = 0


Query: 206 SEELELLQDELSESITVRSKRQTERKARRTRAAEKTATTSVVSLKSGSSSRKKRNSIQEV 265
           S+  EL+    ++ + V S+R+ ++KARR+    +    S + +      R   N+I   
Sbjct: 204 SDTTELVDTTPNQQVFVSSRRKVKKKARRSSVTAENGDQSSLPI----GLRTTWNNIDVP 263

Query: 266 DYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAA 325
               P +Y +     SR      E E+S G++ +  +ER++ +L E  G   + + WAAA
Sbjct: 264 RVRRPPKYRKKRERISR-----NETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAA 323

Query: 326 AGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 385
           AG+N++ L + L+YG  C+D+++KS   LV+ +A+NY+G G+  +DL+Q G  G+++GAE
Sbjct: 324 AGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAE 383

Query: 386 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG-R 445
           +FD ++G+KFSTY  +WI++++   +S  +R + +P  ++     +++ARK L + +G +
Sbjct: 384 RFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIK 443

Query: 446 HPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSVRLIAYSVSFPLFSHC 505
           +  DEEIA+  G S+K++ A     K   S+++K+G                        
Sbjct: 444 YAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVG------------------------ 503

Query: 506 NITIFDLFDSHTLFQEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGM 565
                D F   T F E   D   E+ E+ +++Q  ++D+  +L+ L PRE+QV+  R+G+
Sbjct: 504 -----DCFT--TKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGL 563

Query: 566 EDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL 611
           +D R K+L+EIG+++ VS+E IR+IE  A  KL+++   + L+ YL
Sbjct: 564 QDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569

[Close]

BLAST of CmUC06G108670 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 173.3 bits (438), Expect = 5.9e-43
Identity = 111/334 (33.23%), Postives = 176/334 (52.69%), Query Frame = 0


Query: 279 STSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLN 338
           S S  L+  EE++L   +++  KLE L   + E   NE      A+  G  +R+  + L 
Sbjct: 118 SRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEE---NEMVSVLLASGRGKKKRSANEILC 177

Query: 339 YGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 398
                ++K+ +   RLV+SIA  YQG G+NLQDL+QEG  GL+RGAE+FD  +G+K STY
Sbjct: 178 RRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 237

Query: 399 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLS 458
            +WWIKQA+ ++++ +SR ++LP  M E T +V EA   L  +  R P  EEIAE   L+
Sbjct: 238 VYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLN 297

Query: 459 MKRLAAVLMTPKAPRSLEQKIGINQNLKPSVRLIAYSVSFPLFSHCNITIFDLFDSHTLF 518
           +  +   +   ++P SL++    N  +                                 
Sbjct: 298 VSAVRLAVERSRSPVSLDRVASQNGRM-------------------------------TL 357

Query: 519 QEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEI 578
           QE++  P+    E+M+ ++ MK ++E++L SL  RE +V+   FG+      + +EIG+ 
Sbjct: 358 QEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKS 417

Query: 579 MGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 613
           + +SRER+RQI   A +KL+N      L+ Y  S
Sbjct: 418 LKLSRERVRQINGIALKKLRNVHNVNDLKIYYSS 417

[Close]

BLAST of CmUC06G108670 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 155.2 bits (391), Expect = 1.7e-37
Identity = 116/382 (30.37%), Postives = 201/382 (52.62%), Query Frame = 0


Query: 231 KARRTRAAEKTATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEEL 290
           + RR  A +KT  T V ++   SS ++ R  ++ V   D             +L+  E +
Sbjct: 160 RQRRIGAKKKTNMTHVKAVSDVSSGKQVRGYVKGVISED-------------VLSHVEVV 219

Query: 291 ELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKS 350
            LS+ I+  L+L+  +  L +R G EP+  Q A +  +++  L+  L    L ++K+  S
Sbjct: 220 RLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMS 279

Query: 351 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 410
           N+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD+SKGF+ STY +WWI+Q V ++
Sbjct: 280 NVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRA 339

Query: 411 LSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPK 470
           L D SRT+RLP H+ E    ++ A+ +L  E G  P  + IAE+  +S K++        
Sbjct: 340 LVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKVR------N 399

Query: 471 APRSLEQKIGINQNLKPSVRLIAYSVSFPLFSHCNITIFDLFDSHTLFQEVISDPEAETA 530
           A  ++ +   ++++  PS+         P  +H           H+   +   +      
Sbjct: 400 ATEAVSKVFSLDRDAFPSLN------GLPGETH-----------HSYIADTRLENNPWHG 459

Query: 531 EDMLIKQFMKQDLEKVLD-SLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQI 590
            D L    +K+++ K++  +L  RE+++IR  +G+ D    T ++I + +G+SRER+RQ+
Sbjct: 460 YDDLA---LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQV 500

Query: 591 ESCAFRKLKNKKRTKHLQQYLM 612
              A  KLK+  R + ++  ++
Sbjct: 520 GLVALEKLKHAARKRKMEAMIL 500

The following BLAST results are available for this feature:

BLAST of CmUC06G108670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875580.1	1.1e-296	91.52	RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida]	[more]
XP_004154029.1	1.9e-293	90.36	RNA polymerase sigma factor sigB [Cucumis sativus] >KGN46260.1 hypothetical prot...	[more]
XP_008460092.1	3.2e-293	90.52	PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo]	[more]
XP_022155781.1	1.3e-281	86.75	RNA polymerase sigma factor sigB [Momordica charantia]	[more]
XP_008460093.1	5.3e-280	87.75	PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Cucumis melo]	[more]

BLAST of CmUC06G108670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22056	4.1e-182	60.74	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
P26683	7.0e-73	42.70	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	2.3e-68	39.09	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
Q9LD95	1.1e-62	37.89	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
P74565	2.7e-61	36.18	RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa)...	[more]

BLAST of CmUC06G108670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K917	9.2e-294	90.36	RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G078550 PE=3 SV=1	[more]
A0A1S3CD00	1.6e-293	90.52	RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1	[more]
A0A6J1DSR7	6.2e-282	86.75	RNA polymerase sigma factor OS=Momordica charantia OX=3673 GN=LOC111022820 PE=3 ...	[more]
A0A1S3CBA5	2.6e-280	87.75	RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1	[more]
A0A5A7T955	1.3e-276	90.34	RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of CmUC06G108670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08540.1	2.9e-183	60.74	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	7.9e-64	37.89	RNApolymerase sigma-subunit F	[more]
AT3G53920.1	2.0e-51	31.28	RNApolymerase sigma-subunit C	[more]
AT5G13730.1	5.9e-43	33.23	sigma factor 4	[more]
AT1G64860.1	1.7e-37	30.37	sigma factor A	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 395..403 score: 82.44 coord: 371..384 score: 52.4 coord: 550..562 score: 50.02 coord: 571..586 score: 54.92 coord: 586..597 score: 59.57
IPR000943	RNA polymerase sigma-70	PROSITE	PS00716	SIGMA70_2	coord: 571..597
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 347..416 e-value: 1.7E-18 score: 66.2
IPR009042	RNA polymerase sigma-70 region 1.2	PFAM	PF00140	Sigma70_r1_2	coord: 269..301 e-value: 8.3E-5 score: 22.5
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 420..488 e-value: 4.9E-13 score: 51.3
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 533..612 e-value: 1.8E-28 score: 100.0
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 426..485 e-value: 3.9E-13 score: 49.3
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 546..598 e-value: 1.6E-20 score: 72.3
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 179..419 e-value: 1.9E-38 score: 134.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..238
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 239..256
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..262
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 39..611
None	No IPR available	PANTHER	PTHR30603:SF57	RNA POLYMERASE SIGMA FACTOR SIGB	coord: 39..611
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 540..598 e-value: 6.83373E-15 score: 67.1294
IPR016262	RNA polymerase sigma factor, SigB/C/D/F, plastid	PIRSF	PIRSF000767	Sigma_factor_SigC	coord: 511..612 e-value: 9.4E-47 score: 158.0 coord: 1..490 e-value: 6.1E-136 score: 452.5
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 345..600 e-value: 8.4E-33 score: 111.3
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 268..417
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 513..609
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 415..466

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G108670.1	CmUC06G108670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity