CmUC05G104150 (gene) Watermelon (USVL531) v1

Overview
NameCmUC05G104150
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr05: 32787093 .. 32788078 (+)
RNA-Seq ExpressionCmUC05G104150
SyntenyCmUC05G104150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAACTAAAAAGGGAAATTGTAATGGTAAAAGTTTTTTCCTTTTTTTTTTTAAAAAAAAGATGTAATTGTTGCAATTATAATTAACCAATGACATTAAAGATCTGACATCAATGTCCATAATTATTATTAACTTAAAACTAATAATTAATTAACAGTGCATCATACTATAATGTTAATCCTGAATATTGTTTGTTAATAGTGAACCTTCTAATTTAGTCACAGTTAACAATAGAATAAATCTCATGAGTTTGTCACTGTTGTAACCTATGGAGTTATGTTTACAACCTTAAGGTATTGAAACCAATGGCCCAAACATGATTTTGGGTTTGCCCAAAACAAGGGATCAAATAACCCCTTTTAAGTTACCGGAATCATCGTGGCATATATACATAAATTCACTATAAATCAACATCGATTACATTACATGGGTTAAAAGTCGTCTATTATTACCACGGTCCCAACAAAATAAATAGACTTAAAACTAAACAATAATGCTCCCATCAACCCATAAAGCTTCCACCCGGCATGTTAGCTTGACCCTGGGAAGAGACTTGTCCCTGTGAAACTAATTGCGATCGCCCTCCTTGGACATAAGATTGACCGATTCCACCGGCGACCATTTGTTGCTGCTGTTGCTGCATCTGCTGGCTTTGAAGCTGTGACAGTTGTGGTTGCTGCTGCTGCTGCTGCTGCTGTATTTGAGAAAGTTGCTGCTGCTGCTGCTGTATTTGAGAAAGTTGCTGCTGCTGTTGTTGTTGTTGCAGCTGAGGATGCTGTTGTTGCTGCTGCTGCTGCTGTTGTTGTTGCAGCTGAGGATGCTGTTGTTGTTGCTGCTGCTGCTGCTGTTGCTGTTGTTGCAGCTGAGGAAGCTGATGTTGTTGCAACTGAGAAAGCTGATGTTGCTGTTGCAGCTGCTGTTGCATTTGTTGTTGTTGCATTTGATGCTGCTGTTGTTGCTGTTGACTGGGTATTTGAGGCTTAA

mRNA sequence

ATGCTTGACCCTGGGAAGAGACTTGTCCCTGTGAAACTAATTGCGATCGCCCTCCTTGGACATAAGATTGACCGATTCCACCGGCGACCATTTGTTGCTGCTGTTGCTGCATCTGCTGGCTTTGAAGCTGTGACAGTTGTGGTTGCTGCTGCTGCTGCTGCTGCTGTATTTGAGAAAGTTGCTGCTGCTGCTGCTGTATTTGAGAAAGTTGCTGCTGCTGTTGTTGTTGTTGCAGCTGAGGATGCTGTTGTTGCTGCTGCTGCTGCTGTTGTTGTTGCAGCTGAGGATGCTGTTGTTGTTGCTGCTGCTGCTGCTGTTGCTGTTGTTGCAGCTGAGGAAGCTGATGTTGTTGCAACTGAGAAAGCTGATGTTGCTGTTGCAGCTGCTGTTGCATTTGTTGTTGTTGCATTTGATGCTGCTGTTGTTGCTGTTGACTGGGTATTTGAGGCTTAA

Coding sequence (CDS)

ATGCTTGACCCTGGGAAGAGACTTGTCCCTGTGAAACTAATTGCGATCGCCCTCCTTGGACATAAGATTGACCGATTCCACCGGCGACCATTTGTTGCTGCTGTTGCTGCATCTGCTGGCTTTGAAGCTGTGACAGTTGTGGTTGCTGCTGCTGCTGCTGCTGCTGTATTTGAGAAAGTTGCTGCTGCTGCTGCTGTATTTGAGAAAGTTGCTGCTGCTGTTGTTGTTGTTGCAGCTGAGGATGCTGTTGTTGCTGCTGCTGCTGCTGTTGTTGTTGCAGCTGAGGATGCTGTTGTTGTTGCTGCTGCTGCTGCTGTTGCTGTTGTTGCAGCTGAGGAAGCTGATGTTGTTGCAACTGAGAAAGCTGATGTTGCTGTTGCAGCTGCTGTTGCATTTGTTGTTGTTGCATTTGATGCTGCTGTTGTTGCTGTTGACTGGGTATTTGAGGCTTAA

Protein sequence

MLDPGKRLVPVKLIAIALLGHKIDRFHRRPFVAAVAASAGFEAVTVVVAAAAAAAVFEKVAAAAAVFEKVAAAVVVVAAEDAVVAAAAAVVVAAEDAVVVAAAAAVAVVAAEEADVVATEKADVAVAAAVAFVVVAFDAAVVAVDWVFEA
Homology
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BLAST of CmUC05G104150 vs. NCBI nr
Match: KAG6601304.1 (hypothetical protein SDJN03_06537, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-06
Identity = 101/211 (47.87%), Postives = 110/211 (52.13%), Query Frame = 0 

Query: 6   KRLVPVKLIAIAL-LGHKIDRFHRRPFVAAVA----ASAGFEAVTVV------------- 65
           +RLVP KLI IAL L HKIDRFH RPFVAAVA    ++AGFEAVT+V             
Sbjct: 14  ERLVPGKLIVIALHLEHKIDRFHPRPFVAAVAEFVESAAGFEAVTIVFAAAAAAAAAVVV 73

Query: 66  -----------------VAAAAAAAVFEKVAAAAAVFEKVAAAVV--------------- 125
                             AAAAAAAV  + AAAA V E+ AAAVV               
Sbjct: 74  AVVAAEDAAAAVVAEDAAAAAAAAAVVTEEAAAAVVTEEAAAAVVTEEAAAAVATAAAVA 133

Query: 126 ----------VVAAEDAVVAAAAAVVVAAEDAVVVA-----AAAAVAVVAAEEADVVATE 151
                     VVA + A  AAAAA VVA E+AV  A     AAAA  V  A   DVVA E
Sbjct: 134 TAAAVATAAAVVAEDAAAAAAAAAAVVATEEAVAAAVASEEAAAAAVVAFAVVVDVVAAE 193

The following BLAST results are available for this feature:
BLAST of CmUC05G104150 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6601304.11.7e-0647.87hypothetical protein SDJN03_06537, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmUC05G104150 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC05G104150 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC05G104150 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC05G104150.1CmUC05G104150.1mRNA