CmUC05G103000 (gene) Watermelon (USVL531) v1

Overview
NameCmUC05G103000
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionReplication protein A 14 kDa subunit B-like
LocationCmU531Chr05: 31862573 .. 31866013 (-)
RNA-Seq ExpressionCmUC05G103000
SyntenyCmUC05G103000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGTGAAATAGATTTAGACAATAACAATTTTTAAGAGTGACAGTTCGTAAATCTCTCTTAAATATGTTTTTAATAATTTAAAATCAATCTTGATAATATAAAGATTACATATAAAAATATAAAATTAAATATTACATAGATTTTGAGTAATTAAAAATATATTTCAGAGTTATTTTGAACACGAACAATAGTAATTTTTATAATTTTAAAATCATTTCCAAACTTGCACTAAGCCTACTTATTCGTTAAATAAAGGCTTATTTCGAACCAGGATAAATAACAAATAGTCCGTTTGATAACGTTCTCATTTCCTGTTTTTTGTTTTTTGTTTATTCTTTCTTTAGAACAAGAAACAAAACTATGTTAGATAACTATTATTATTTCTTGTTTCTTAGAAAAAAAGAAACATAAATATAAACTTGTTTGATAACTATTTTATTGTTTCTTGTATAAATATAGAAAAATTATTTTTGTAAATAACAAATTAATAAAGAAAAAAAAATGTAATGAAAAAAATAGATTCTTCAAAAGGTGAGAATGATGGCTTAGAAACAGAATAAACTACTTTTTGTTACTTCTCAATTTTTGCCCATTTTGTAGAAATATTTTTTAAAATTTAAAAATAACAAACTAAAATAGTTATGAATTAAGTTTATAAGAAAATATGAAACGGAACGACATTATCACATCGGCTCAAAATTTGCCCTTTCATCTCGTTCCCGCCAATATGTCTCCTCGGTAAAAAACCGCCCACAAATTCCCGCGTCTTCGTAGTTCGTCACTTGAAATTCTCAATCTTACTCCGAGCTGTCTCTCTCCCTCTCTCCATCTCTCTGTATCCCGCGCGGAAGAACCATAGTCTCACAGGTACGCGTTTGAACTCGTTCTGTGCCAGCAGATTTAGGGTTTGAGGCTTTCTGCTACTTAGTTCGTCCCGTTATCAACAATTTCAATTTCTTCTATTGTATGTAGGTAGTTGTTTTGATGATTTCCTCCATAACCATAGGCTGTGATGATATTTTGTGAAATCGATCGAAGTCTTTCGTTCTGCAGCTATATGAATCGAAATTTATTTTACTAATTTGATAGATTGTAATCTTCTTTGCCCAGAGCATTGCAATTGATTTCTGGTCTCGTTGTAGTTGTATGTTCTATTAGCCATGGAAATTAAAATTCCTTTGCCGACAAGCCTTTCTGTGTTCGTTTCTTTTAGAAGTGTATTCAGTTTCTGCACTTATGCTATCGATTTCTGCTTTTAGTCTTCGCTTCTCGTACGATTCTGCTATTCTCAACACGAACAGAGTTACTAGGTCATGATCTCAATTGTTTGTTGTGCTAAATGTTATAGCTGCATTAAGTTGTTTGTTTCTGATGGTTTATCATTGAGACTAGAAGATGAAGTATATTTGGTGAAAGGCATTTTTCTTATGCAGAGTAGAGTTCTTAATTTGCTTTTGAACGTTTTCGTTTTCGTTTTCTCCCTTGCATGTAGGAGTGCTATCATTATAGATTCTTAAATTACAATCTAAACATTCAGGTTGTATCAATTCAAACTCAAACTAATAATTTTATCTATCTAAACTTTAAAATTTGAAAAGTGAATCAATTTAGACTTTTCATATTAGAATTAGTATTGAAACTGTTAATACACAATTTTCATACTTGCATAAGACTTTTCTTTAAATCAAAATGATCTTTCATCTTTTTGTCTTCCCTTTTTTTAATACTTATTTAGAAAGTATTACCTAATAACTTATCTTGCTACTTTGGTAAGATGTTGGGATAACCGAATAAAAATAATATTATTTAGGTGATGTTGAGCTGGTTTGAAATGGAATCAAGTGAAAATAGCTATAGATTACTAATAAATGGTCTAAATTGATTCAAATTCTAAGCTTTAAATTGATACAATTATTAGTTTGAGGTTTTACTGATATAACCTAAAATTTAGGAGTACAGACTGATTTTTTCCTAGATTTATTCAGTTTGTAAGTTTAGACATTCACATGATTTTTGTTATCATATTTCCAGTCACTTTAGTTTTCTTTGAATATTACACTGCAATGATCTTATCACATTAACTGTTCAATCCCAAACATCATGTCATTCGTCGTGGTTGGTCTTTTCAGGATATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATCGTGGAAGAAGGATTCGAGCAGTGGTTCAAGTTATCCAAAGTAATGGTGGAATCGTAACAGGAAAATCTACGGATGAACAACAATTGACTGTTCATGGCTTGCCTACAGTCCCTCTCATGAACTTTGTAGAGGTGGTTGGTATTGCTGAGGACAACAAGAACATCAATGTTGAACATTGGACCGACTTTGGAACCACTTTTGGTATGTACTATAACCATTTCTTTCTGCTATCATCATTATGCCTTTGATAATATCTCACTGTTGCCTATGGATTCGATAGCTCAGCAAATGCCATTTGGTCTTGACATGATCTATCTTTTCTCTTACCCCTCACGAATGTTAGATTAAATGACTTGTTTGGTATTCAGTTTTAAAATTGAAACTCTCTCTCTTTTAAAACTAGTCCTTGAACTTTCAAAATTATCTTTGTCACGACATTAGTGGCTTACTCCTTTACACTTACTGTAACTTCTTTTATAGAGCGAGAATAAGGAGTAGTATGGAAGATTAGTCCTTTTCGCAATGCTCCCCCAATCGATAGTTTAGAGTTACATTAGACATAAAATTTAAATTGATATCTTTTATTAGTTCAACCATTGTGGAAGTGGTATTAGATAAACATGAAGTTCTATCTCAAAACCAATTGGCTCACAAATTTAGAACCTATGAAATAAAAAATTGAAAGTTTAGAGACTTGTTAGACACTCTTAAAAGTTCATGTAGTAAATTTGCAATATACTTTGAAATTTACCCTTTTTTTTTTTTCTCTCTCTCTCTCTTTCAGATACTCAATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAAGGATTTGTAGGTAGGCCATGAGAAGAGGCAGAGGTATAATTTATTATGTGATTATGAGTCTTCTATGCTTGTAAGTTGTAACTCATGTGGCGTGTTAACTTGCTTAACTGCCGTTAATCTATTTAAAGCAACCGTGGTATTTGTTTTGTTCTCTATGTGAACGAAGTACATAATTTCATGGAACTTAGGGATTCACACTTTTTTCTTTTGCCTTGAAAGCACTGAATCACTGGTTTCTCTTTAAGGAATGATTTTTGTCGTAATCCAAAATCACTCTCAACAATATCTTTAATCGATCCAAATTTATTTAATCTATGTTTTACACTATGAAACACAATTTTCATACCAATAAAATAGTTTTTATTTTATTTTATTTTATTAAGACATGTTTCGGCAGTTAA

mRNA sequence

ATGATAAACAAGAAACAAAACTATGATATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATCGTGGAAGAAGGATTCGAGCAGTGGTTCAAGTTATCCAAAGTAATGGTGGAATCGTAACAGGAAAATCTACGGATGAACAACAATTGACTGTTCATGGCTTGCCTACAGTCCCTCTCATGAACTTTGTAGAGGTGGTTGGTATTGCTGAGGACAACAAGAACATCAATGTTGAACATTGGACCGACTTTGGAACCACTTTTGATACTCAATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGCCATGAGAAGAGGCAGAGGTATAATTTATTATGTGATTATGAGTCTTCTATGCTTGTAAGTTGTAACTCATGTGGCGTGTTAACTTGCTTAACTGCCGTTAATCTATTTAAAGCAACCGTGACATGTTTCGGCAGTTAA

Coding sequence (CDS)

ATGATAAACAAGAAACAAAACTATGATATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATCGTGGAAGAAGGATTCGAGCAGTGGTTCAAGTTATCCAAAGTAATGGTGGAATCGTAACAGGAAAATCTACGGATGAACAACAATTGACTGTTCATGGCTTGCCTACAGTCCCTCTCATGAACTTTGTAGAGGTGGTTGGTATTGCTGAGGACAACAAGAACATCAATGTTGAACATTGGACCGACTTTGGAACCACTTTTGATACTCAATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGCCATGAGAAGAGGCAGAGGTATAATTTATTATGTGATTATGAGTCTTCTATGCTTGTAAGTTGTAACTCATGTGGCGTGTTAACTTGCTTAACTGCCGTTAATCTATTTAAAGCAACCGTGACATGTTTCGGCAGTTAA

Protein sequence

MINKKQNYDMDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRSHEKRQRYNLLCDYESSMLVSCNSCGVLTCLTAVNLFKATVTCFGS
Homology
[Close]
BLAST of CmUC05G103000 vs. NCBI nr
Match: XP_038893019.1 (replication protein A 14 kDa subunit B-like [Benincasa hispida] >XP_038893020.1 replication protein A 14 kDa subunit B-like [Benincasa hispida])

HSP 1 Score: 195.3 bits (495), Expect = 4.0e-46
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNF 69
           MDTSNPAVFVNGELLSMH GR+IRAVVQVIQS+GGIVTGKSTDEQQLT+ GLPTVPLMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIRGLPTVPLMNF 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           VEVVGIAE NK INVEHWTDFGTTFDTQSYNQLCQLANGEFRS
Sbjct: 61  VEVVGIAEANKIINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 103

[Close]
BLAST of CmUC05G103000 vs. NCBI nr
Match: XP_008446755.1 (PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >XP_008446756.1 PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >KAA0034652.1 replication protein A 14 kDa subunit B-like [Cucumis melo var. makuwa] >TYK09203.1 replication protein A 14 kDa subunit B-like [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 4.0e-46
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNF 69
           MDTSNPAVFVNGELLSMH GR+IRAVVQVIQS+GGIVTGKSTDEQQLT+HGLPTVP MNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           VEVVGIA+ NK INVEHWTDFGTTFDT+SYNQLCQLANGEFRS
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRS 103

[Close]
BLAST of CmUC05G103000 vs. NCBI nr
Match: KAG6601223.1 (Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192.6 bits (488), Expect = 2.6e-45
Identity = 93/104 (89.42%), Postives = 97/104 (93.27%), Query Frame = 0 

Query: 9   DMDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMN 68
           DMDTSNPAVF NGELL+MH GR+IRAVVQVIQS+GG+VTGKSTDEQ LTVHGLPTVPLMN
Sbjct: 228 DMDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMN 287

Query: 69  FVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           FVEVVGIAE NK INVEHWTDFG TFD QSYNQLCQLANGEFRS
Sbjct: 288 FVEVVGIAEGNKIINVEHWTDFGNTFDAQSYNQLCQLANGEFRS 331

[Close]
BLAST of CmUC05G103000 vs. NCBI nr
Match: XP_023539791.1 (replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.0 bits (484), Expect = 7.5e-45
Identity = 92/103 (89.32%), Postives = 97/103 (94.17%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNF 69
           MDTSNPAVF NGELL++H GR+IRAVVQVIQS+GG+VTGKSTDEQ LTVHGLPTVPLMNF
Sbjct: 1   MDTSNPAVFCNGELLNVHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           VEVVGIAE NK INVEHWTDFGTTFD QSYNQLCQLANGEFRS
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTTFDAQSYNQLCQLANGEFRS 103

[Close]
BLAST of CmUC05G103000 vs. NCBI nr
Match: XP_004135037.1 (replication protein A 14 kDa subunit B [Cucumis sativus] >XP_011655832.1 replication protein A 14 kDa subunit B [Cucumis sativus] >XP_031740923.1 replication protein A 14 kDa subunit B [Cucumis sativus] >KGN52188.1 hypothetical protein Csa_008262 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 2.2e-44
Identity = 93/103 (90.29%), Postives = 96/103 (93.20%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNF 69
           MDTSNPAVFVNGELLSMH GR+IRAVVQVIQS+GGIVTGKSTDEQQLT+HGLPTVP MNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           VEVVGIAE NK I VE WTDFGTTFDT SYNQLCQLANGEFRS
Sbjct: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRS 103

[Close]
BLAST of CmUC05G103000 vs. ExPASy Swiss-Prot
Match: Q6NLG7 (Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.5e-29
Identity = 60/102 (58.82%), Postives = 79/102 (77.45%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNF 69
           MDTS+PA FVNG LL  + G+++RAV+QVI+S+ G V GKSTD+QQ+ V G P  PL  +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFR 112
           +EV+GIAE +  I  E WT+FG +FD Q+YN+LC+LANGEFR
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFR 102

[Close]
BLAST of CmUC05G103000 vs. ExPASy Swiss-Prot
Match: Q9LXK1 (Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-25
Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHG-LPTVPLMN 69
           MDTS+P+ FVNG LL    G+++R V+QV  S  G V GKSTD+ Q+ V G  P  PL  
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 70  FVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFR 112
           ++EV+GIAE +  I  E WT+FG TFDTQ+YN+LC+LANGEF+
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFK 103

[Close]
BLAST of CmUC05G103000 vs. ExPASy Swiss-Prot
Match: Q9SDK9 (Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN=RPA3 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.0e-24
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNF 69
           MDTS PA FVNGE+L M  GRR+R VVQ  +  GG++ G+STD  QLT+ G    P+ ++
Sbjct: 1   MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHY 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFR 112
           VE++GIAE N+ I  E  TDFG  FD   +N LC+LANG+ +
Sbjct: 61  VEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMK 102

[Close]
BLAST of CmUC05G103000 vs. ExPASy TrEMBL
Match: A0A1S3BGM8 (replication protein A 14 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103489388 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.9e-46
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNF 69
           MDTSNPAVFVNGELLSMH GR+IRAVVQVIQS+GGIVTGKSTDEQQLT+HGLPTVP MNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           VEVVGIA+ NK INVEHWTDFGTTFDT+SYNQLCQLANGEFRS
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRS 103

[Close]
BLAST of CmUC05G103000 vs. ExPASy TrEMBL
Match: A0A5A7SU42 (Replication protein A 14 kDa subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001960 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.9e-46
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNF 69
           MDTSNPAVFVNGELLSMH GR+IRAVVQVIQS+GGIVTGKSTDEQQLT+HGLPTVP MNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           VEVVGIA+ NK INVEHWTDFGTTFDT+SYNQLCQLANGEFRS
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRS 103

[Close]
BLAST of CmUC05G103000 vs. ExPASy TrEMBL
Match: A0A0A0KRF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614640 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.1e-44
Identity = 93/103 (90.29%), Postives = 96/103 (93.20%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNF 69
           MDTSNPAVFVNGELLSMH GR+IRAVVQVIQS+GGIVTGKSTDEQQLT+HGLPTVP MNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           VEVVGIAE NK I VE WTDFGTTFDT SYNQLCQLANGEFRS
Sbjct: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRS 103

[Close]
BLAST of CmUC05G103000 vs. ExPASy TrEMBL
Match: A0A6J1JC99 (replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111485454 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 4.0e-44
Identity = 91/103 (88.35%), Postives = 95/103 (92.23%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNF 69
           MDTSNPAVF NGELL+MH GR+IRAVVQVIQS+ G+VTGKSTDEQ LTVHGLPTVPLMNF
Sbjct: 1   MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDDGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           VEVVGIAE NK INVEHWTDFGT FD QSYNQLCQLANGEFRS
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTIFDAQSYNQLCQLANGEFRS 103

[Close]
BLAST of CmUC05G103000 vs. ExPASy TrEMBL
Match: A0A6J1D9X1 (replication protein A 14 kDa subunit B-like OS=Momordica charantia OX=3673 GN=LOC111018714 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.5e-40
Identity = 84/103 (81.55%), Postives = 92/103 (89.32%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNF 69
           MDTSNPAVFVN ELL +H GR+IRAV QV +S+GG+VTGKSTDEQ+LTVHGLP VPLMNF
Sbjct: 1   MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           VEV+GIAE NK INVEH TDFG TFD QSYNQLCQLANGEF+S
Sbjct: 61  VEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGEFKS 103

[Close]
BLAST of CmUC05G103000 vs. TAIR 10
Match: AT4G18590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.5e-30
Identity = 60/102 (58.82%), Postives = 79/102 (77.45%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNF 69
           MDTS+PA FVNG LL  + G+++RAV+QVI+S+ G V GKSTD+QQ+ V G P  PL  +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFR 112
           +EV+GIAE +  I  E WT+FG +FD Q+YN+LC+LANGEFR
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFR 102

[Close]
BLAST of CmUC05G103000 vs. TAIR 10
Match: AT3G52630.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 117.9 bits (294), Expect = 7.6e-27
Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHG-LPTVPLMN 69
           MDTS+P+ FVNG LL    G+++R V+QV  S  G V GKSTD+ Q+ V G  P  PL  
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 70  FVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFR 112
           ++EV+GIAE +  I  E WT+FG TFDTQ+YN+LC+LANGEF+
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFK 103

[Close]
BLAST of CmUC05G103000 vs. TAIR 10
Match: AT3G52630.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 117.9 bits (294), Expect = 7.6e-27
Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHG-LPTVPLMN 69
           MDTS+P+ FVNG LL    G+++R V+QV  S  G V GKSTD+ Q+ V G  P  PL  
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 70  FVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFR 112
           ++EV+GIAE +  I  E WT+FG TFDTQ+YN+LC+LANGEF+
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFK 103

The following BLAST results are available for this feature:
BLAST of CmUC05G103000 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038893019.14.0e-4693.20replication protein A 14 kDa subunit B-like [Benincasa hispida] >XP_038893020.1 ... [more]
XP_008446755.14.0e-4691.26PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >XP_008446... [more]
KAG6601223.12.6e-4589.42Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. s... [more]
XP_023539791.17.5e-4589.32replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo][more]
XP_004135037.12.2e-4490.29replication protein A 14 kDa subunit B [Cucumis sativus] >XP_011655832.1 replica... [more]
BLAST of CmUC05G103000 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6NLG73.5e-2958.82Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B ... [more]
Q9LXK11.1e-2555.34Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A ... [more]
Q9SDK92.0e-2451.96Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
BLAST of CmUC05G103000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BGM81.9e-4691.26replication protein A 14 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103489... [more]
A0A5A7SU421.9e-4691.26Replication protein A 14 kDa subunit B-like OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0KRF21.1e-4490.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614640 PE=3 SV=1[more]
A0A6J1JC994.0e-4488.35replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1D9X13.5e-4081.55replication protein A 14 kDa subunit B-like OS=Momordica charantia OX=3673 GN=LO... [more]
BLAST of CmUC05G103000 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G18590.12.5e-3058.82Nucleic acid-binding, OB-fold-like protein [more]
AT3G52630.17.6e-2755.34Nucleic acid-binding, OB-fold-like protein [more]
AT3G52630.27.6e-2755.34Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 5..113
e-value: 3.5E-18
score: 67.4
NoneNo IPR availablePANTHERPTHR47058:SF1NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEINcoord: 10..112
NoneNo IPR availablePANTHERPTHR47058REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATEDcoord: 10..112
NoneNo IPR availableCDDcd04479RPA3coord: 15..107
e-value: 1.15364E-23
score: 86.9333
IPR013970Replication factor A protein 3PFAMPF08661Rep_fac-A_3coord: 10..108
e-value: 3.9E-19
score: 68.9
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 15..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC05G103000.1CmUC05G103000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
cellular_component GO:0031981 nuclear lumen
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding