CmUC05G101710 (gene) Watermelon (USVL531) v1

Overview
NameCmUC05G101710
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Description40S ribosomal protein S29
LocationCmU531Chr05: 30651893 .. 30654116 (+)
RNA-Seq ExpressionCmUC05G101710
SyntenyCmUC05G101710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTGGGTCATAAGGTAACCAGGTAATGAAGAGATTTTAAAAACAAAGGTAGCATCTATCCATTATTGTCTAACTAAGATGTTACTTGTTTGTTTAGAAAAACTAGCACTACTGCATAGATAACCAACTGATTACCTAGTTTAATCCAATCTTGATCATGACCCCTCTCTTCTCTCCTTACTTTCTTATCTTTATATTTTCTACCAAATAATAAAACTAGATTTGGGTGTACGTCGCCTCTAATATAATTTTGCCTTCATTTTCTTCTTCCCCTCGACTTCATCTCTACTTCTCTCATTTCTGATTTGAGTTGACTCTGACAATTGGTTGGTATCCAGAATTCCAATCACACGTTTGCAATATTTGTCGTCTCCCATGATCGCATATTCGCATCAGACACATATTCGTTGACGTCTGATTCGATAGCCAATCAATTTTGCAACAAAACTACACTTTGGTCCTTGCACATATTCGCATCAGACACATATGGTTTAGTCTCCAAAGTTTGAGTTTAATCTGATCATAGTGTCTCTTACACTTATACATTTGAATATTAAATTTTTACTAATATCCACTAGTAATTGTGTTAATTTTAAAATAGTTTAATTAATTAATAATCAAATTAGTTTTCATTAATTTTTAGTCATTAATTTAAAACTTACATCATATTATTATTTTTAAATAAAGCAATTTAAATTTGATATAACAATTTAAGATTAGATATGTCTTTCGCGAACCCAACATCATCCACCAAGGGTTACCAAGAGTAATTGGGTTACCAAGGGTAATTGATAAGCCAACTAAAGTAAGCATGGATGGTAACTTGGATACATTTCAGGGTCACATATAAAAGGAATTCAAATAAATTTTTTAATTTTTTTTTATATGGCAAATTATGATTAGACAATTTGTTGAAATGTGCCAAGATAGTTTTTGATCCACTAAAAAATATAATTGTACTTTTTTCCAACCCAATATATTTATTTTCTATTCTTTAATCATTATGGGCTATTCTAGAAGTTAATTTTACAAGTTAAAGTATGATAACTTTAAAAAATGTGTAGTGAGTATCTAAATTTTTAATTATATAATTTAATATATCCAATTCAATTTTTCAAAATAAATTTAATGTATCACCTTAATAATAACTTATTAAACACAATTTAAAACTTAAGTACTTATTAGGCATGTTTAGGTTCTAATCATATTAGTTGGTGTTTTCAACAACATACAATTAACTATTTGAGATTTTAATTATAATTACTATTTCAAATCTTTCTTCTTTATAACATCTATTTAAAACTAAAATAGATGTTATAATAACTCAAACTAAAATAGAATGTACCTAGCCAACAAATTATTATAACTCATCACAATTTAATTTAAGAGGTAGTAAACCTTGTAATTTAAAATTTATTATTATTATTTATTTTTATTTTCTCATTCGCAGATGCTAAAACATAAAAGGTCGGCAAACGATGCAATTTTTTTTTTTTTTTAAGTAACAATTATTTTTCGTTTCATTTTATTTTTTTGGAAACGAATGAATTACAAACTTTTAAATCTGCGAAGAGGCCGTGGAAAAGCGGTTCTTTTGTCCACGATTTTGATTCGGTGATTAAACGGTGCGTTTCAAGAGGCGGTTGCTATTGGTATCCGGGAGCTGCTCTATATAAACGATGCAGCCGTCTAGGGTTACAAAGTTTTGCGAATTTAGCGAAGCGGCTGTCAGAGTTGAAAAGGGTTTCTAAGGTAATCGATCAACGAAGAAGACGATGGGGCATTCAAACGTGTGGAATTCACATCCAAAGAACTATGGACCTGGTTCTCGTACTTGGTATGCCTCCTCCTACAATTTTGATCCATGTTCAACGCTGCTCTTTGAACTGTTCATATAATTTTGATCTTATTGGCCCTAATTTCGGGGCGAATCTCTTATCTGTTGTCGTATCTGGCATTCGACTGGGATTTTCTTTGACCAATTCGATTGCATTGTTCTTATGAACATAAACTCAATTGAAAAATTAAGCTGATTCTTGAATTTGAGACTACAATGCTGGTTTGCGCAAAACATTTATCATCTTAATGTTTGAGTGATTGTTCTTTCCCAGCCGAGTCTGCGGAAACCCCCATGGATTGATCCGCAAGTATGGCCTGATGTGCTGCAGGCAGTGCTTCCGTAGTAATGCCAAAGAAATTGGCTTCATCAAGGTAAATTAA

mRNA sequence

ATGAATTTGGGTCATAAGAGGCCGTGGAAAAGCGGTTCTTTTGTCCACGATTTTGATTCGGTGATTAAACGGTGCGTTTCAAGAGGCGGTTGCTATTGGTATCCGGGAGCTGCTCTATATAAACGATGCAGCCGTCTAGGGTTACAAAGTTTTGCGAATTTAGCGAAGCGGCTGTCAGAGTTGAAAAGGGTTTCTAAGGTAATCGATCAACGAAGAAGACGATGGGGCATTCAAACGTGTGGAATTCACATCCAAAGAACTATGGACCTGGTTCTCGTACTTGGTATGCCTCCTCCTACAATTTTGATCCATGTTCAACGCTGCTCTTTGAACTGTTCATATAATTTTGATCTTATTGGCCCTAATTTCGGGGCGAATCTCTTATCTGTTGTCGTATCTGGCATTCGACTGGGATTTTCTTTGACCAATTCGATTGCATTCCGAGTCTGCGGAAACCCCCATGGATTGATCCGCAAGTATGGCCTGATGTGCTGCAGGCAGTGCTTCCGTAGTAATGCCAAAGAAATTGGCTTCATCAAGGTAAATTAA

Coding sequence (CDS)

ATGAATTTGGGTCATAAGAGGCCGTGGAAAAGCGGTTCTTTTGTCCACGATTTTGATTCGGTGATTAAACGGTGCGTTTCAAGAGGCGGTTGCTATTGGTATCCGGGAGCTGCTCTATATAAACGATGCAGCCGTCTAGGGTTACAAAGTTTTGCGAATTTAGCGAAGCGGCTGTCAGAGTTGAAAAGGGTTTCTAAGGTAATCGATCAACGAAGAAGACGATGGGGCATTCAAACGTGTGGAATTCACATCCAAAGAACTATGGACCTGGTTCTCGTACTTGGTATGCCTCCTCCTACAATTTTGATCCATGTTCAACGCTGCTCTTTGAACTGTTCATATAATTTTGATCTTATTGGCCCTAATTTCGGGGCGAATCTCTTATCTGTTGTCGTATCTGGCATTCGACTGGGATTTTCTTTGACCAATTCGATTGCATTCCGAGTCTGCGGAAACCCCCATGGATTGATCCGCAAGTATGGCCTGATGTGCTGCAGGCAGTGCTTCCGTAGTAATGCCAAAGAAATTGGCTTCATCAAGGTAAATTAA

Protein sequence

MNLGHKRPWKSGSFVHDFDSVIKRCVSRGGCYWYPGAALYKRCSRLGLQSFANLAKRLSELKRVSKVIDQRRRRWGIQTCGIHIQRTMDLVLVLGMPPPTILIHVQRCSLNCSYNFDLIGPNFGANLLSVVVSGIRLGFSLTNSIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
Homology
[Close]
BLAST of CmUC05G101710 vs. NCBI nr
Match: MQM20640.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-12
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 144 SIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 183
           S A RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
Sbjct: 18  SRACRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 56

[Close]
BLAST of CmUC05G101710 vs. NCBI nr
Match: KYP47782.1 (40S ribosomal protein S29 [Cajanus cajan])

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-12
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 144 SIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 183
           S A RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
Sbjct: 18  SRACRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 56

[Close]
BLAST of CmUC05G101710 vs. NCBI nr
Match: BBH09677.1 (Ribosomal protein S14p/S29e family protein [Prunus dulcis])

HSP 1 Score: 82.4 bits (202), Expect = 4.4e-12
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 145 IAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 183
           + FRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK N
Sbjct: 1   MGFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKNN 38

[Close]
BLAST of CmUC05G101710 vs. NCBI nr
Match: BAU00845.1 (hypothetical protein VIGAN_10248000 [Vigna angularis var. angularis])

HSP 1 Score: 82.4 bits (202), Expect = 4.4e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 148 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 183
           RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
Sbjct: 22  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 56

[Close]
BLAST of CmUC05G101710 vs. NCBI nr
Match: PKA51526.1 (40S ribosomal protein S29 [Apostasia shenzhenica])

HSP 1 Score: 81.6 bits (200), Expect = 7.5e-12
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 144 SIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 183
           S A RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV+
Sbjct: 18  SRACRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVD 56

[Close]
BLAST of CmUC05G101710 vs. ExPASy Swiss-Prot
Match: Q680P8 (40S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 4.5e-12
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 148 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 181
           RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 22  RVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

[Close]
BLAST of CmUC05G101710 vs. ExPASy Swiss-Prot
Match: Q5I7K3 (40S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.9e-12
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 148 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 181
           RVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIK
Sbjct: 22  RVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIK 54

[Close]
BLAST of CmUC05G101710 vs. ExPASy Swiss-Prot
Match: P62276 (40S ribosomal protein S29 OS=Bos taurus OX=9913 GN=RPS29 PE=3 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-08
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 148 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 183
           RVC N HGLIRKYGL  CRQCFR  AK+IGFIK++
Sbjct: 22  RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56

[Close]
BLAST of CmUC05G101710 vs. ExPASy Swiss-Prot
Match: P62273 (40S ribosomal protein S29 OS=Homo sapiens OX=9606 GN=RPS29 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-08
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 148 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 183
           RVC N HGLIRKYGL  CRQCFR  AK+IGFIK++
Sbjct: 22  RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56

[Close]
BLAST of CmUC05G101710 vs. ExPASy Swiss-Prot
Match: P62274 (40S ribosomal protein S29 OS=Mus musculus OX=10090 GN=Rps29 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-08
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 148 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 183
           RVC N HGLIRKYGL  CRQCFR  AK+IGFIK++
Sbjct: 22  RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56

[Close]
BLAST of CmUC05G101710 vs. ExPASy TrEMBL
Match: A0A151RZ09 (40S ribosomal protein S29 OS=Cajanus cajan OX=3821 GN=KK1_030546 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.5e-13
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 144 SIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 183
           S A RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
Sbjct: 18  SRACRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 56

[Close]
BLAST of CmUC05G101710 vs. ExPASy TrEMBL
Match: A0A4Y1S112 (Ribosomal protein S14p/S29e family protein OS=Prunus dulcis OX=3755 GN=Prudu_022244 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-12
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 145 IAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 183
           + FRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK N
Sbjct: 1   MGFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKNN 38

[Close]
BLAST of CmUC05G101710 vs. ExPASy TrEMBL
Match: A0A0S3T7T0 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G248000 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 148 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 183
           RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
Sbjct: 22  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 56

[Close]
BLAST of CmUC05G101710 vs. ExPASy TrEMBL
Match: A0A2I0A7K3 (40S ribosomal protein S29 OS=Apostasia shenzhenica OX=1088818 GN=RPS29 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.6e-12
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 144 SIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 183
           S A RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV+
Sbjct: 18  SRACRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVD 56

[Close]
BLAST of CmUC05G101710 vs. ExPASy TrEMBL
Match: A0A0E0FCF3 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.6e-12
Identity = 43/83 (51.81%), Postives = 51/83 (61.45%), Query Frame = 0 

Query: 98  PPTILIHVQRCSLNCSYNFDLIGPNFGANLLSVVVSGIRLGFSLTNSIAFRVCGNPHGLI 157
           PP  L+H  R  +       L G   G    + ++ GI++G         RVCGNPHGLI
Sbjct: 27  PPPPLLHRPRRQI-----VALPGSISGLEYFTWMIPGIKIG-------VCRVCGNPHGLI 86

Query: 158 RKYGLMCCRQCFRSNAKEIGFIK 181
           RKYGLMCCRQCFRSNAK+IGFIK
Sbjct: 87  RKYGLMCCRQCFRSNAKDIGFIK 97

[Close]
BLAST of CmUC05G101710 vs. TAIR 10
Match: AT3G43980.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-13
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 148 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 181
           RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 22  RVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

[Close]
BLAST of CmUC05G101710 vs. TAIR 10
Match: AT3G44010.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-13
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 148 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 181
           RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 22  RVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

[Close]
BLAST of CmUC05G101710 vs. TAIR 10
Match: AT4G33865.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-13
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 148 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 181
           RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 22  RVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

The following BLAST results are available for this feature:
BLAST of CmUC05G101710 vs. NCBI nr
Match NameE-valueIdentityDescription
MQM20640.12.0e-1294.87hypothetical protein [Colocasia esculenta][more]
KYP47782.12.0e-1294.8740S ribosomal protein S29 [Cajanus cajan][more]
BBH09677.14.4e-1292.11Ribosomal protein S14p/S29e family protein [Prunus dulcis][more]
BAU00845.14.4e-12100.00hypothetical protein VIGAN_10248000 [Vigna angularis var. angularis][more]
PKA51526.17.5e-1292.3140S ribosomal protein S29 [Apostasia shenzhenica][more]
BLAST of CmUC05G101710 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q680P84.5e-1293.9440S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2[more]
Q5I7K35.9e-1290.9140S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1[more]
P622761.4e-0874.2940S ribosomal protein S29 OS=Bos taurus OX=9913 GN=RPS29 PE=3 SV=2[more]
P622731.4e-0874.2940S ribosomal protein S29 OS=Homo sapiens OX=9606 GN=RPS29 PE=1 SV=2[more]
P622741.4e-0874.2940S ribosomal protein S29 OS=Mus musculus OX=10090 GN=Rps29 PE=1 SV=2[more]
BLAST of CmUC05G101710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A151RZ099.5e-1394.8740S ribosomal protein S29 OS=Cajanus cajan OX=3821 GN=KK1_030546 PE=3 SV=1[more]
A0A4Y1S1122.1e-1292.11Ribosomal protein S14p/S29e family protein OS=Prunus dulcis OX=3755 GN=Prudu_022... [more]
A0A0S3T7T02.1e-12100.00Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G... [more]
A0A2I0A7K33.6e-1292.3140S ribosomal protein S29 OS=Apostasia shenzhenica OX=1088818 GN=RPS29 PE=3 SV=1[more]
A0A0E0FCF33.6e-1251.81Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=3 SV=1[more]
BLAST of CmUC05G101710 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G43980.13.2e-1393.94Ribosomal protein S14p/S29e family protein [more]
AT3G44010.13.2e-1393.94Ribosomal protein S14p/S29e family protein [more]
AT4G33865.13.2e-1393.94Ribosomal protein S14p/S29e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043140Ribosomal protein S14/S29GENE3D4.10.830.1030s Ribosomal Protein S14; Chain Ncoord: 140..182
e-value: 1.6E-20
score: 74.8
IPR001209Ribosomal protein S14PFAMPF00253Ribosomal_S14coord: 148..180
e-value: 4.4E-10
score: 39.1
NoneNo IPR availablePANTHERPTHR12010:SF1440S RIBOSOMAL PROTEIN S29coord: 144..180
IPR03974440S ribosomal protein S29/30S ribosomal protein S14 type ZPANTHERPTHR1201040S RIBOSOMAL PROTEIN S29coord: 144..180

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC05G101710.1CmUC05G101710.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0008270 zinc ion binding