CmUC05G099980 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC05G099980
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Protein RADIALIS-like 3
Location	CmU531Chr05: 29377899 .. 29378488 (+)
RNA-Seq Expression	CmUC05G099980
Synteny	CmUC05G099980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCAAGCTCTGTCACGTCGACACGTGGCTTTTACTCATCCTGGACAAAAAAGGAAAACAAGAAATTTGAGGAAGCATTAGCCTTCTATGACCAGGACACACCAGACCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGAAAAACAGCTGAGGAAGCAAGAAGGCTCTATGAGCTACTAGTGCGAGATGTCAGAAAAATAGAAGCTGGTCAAGTCCAAATACCCCTCTACAAGAACGCTGGATGTAATGGCAGAGGGTACGCTGACCAGCAGAGGTAATATCCTATTTGCTGAATATTTCCTCTCCGAAAATCATTCCAAGCCTGAATCCTATCCTCGGTAATCTTCTTCTTTCTACTAGTACATTAGAATAAATGTCCTTCCCAAGAAACTTATGTCTTATAATTACTAGAGAAATATATTGAGACGATTCTATAACCAGCCCGTTGTTGAAATATGGTTTGATGTGCAGAAATGTATTCACCAGACTACTAACTTCTCATTTCAACATTTTATACAACATCGCACTTGGAACTTCAGTTTCCTTTGAAGTAGATCAAGCGAAGAATCTGAAAATTACCTGA

mRNA sequence

ATGGCATCAAGCTCTGTCACGTCGACACGTGGCTTTTACTCATCCTGGACAAAAAAGGAAAACAAGAAATTTGAGGAAGCATTAGCCTTCTATGACCAGGACACACCAGACCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGAAAAACAGCTGAGGAAGCAAGAAGGCTCTATGAGCTACTAGTGCGAGATGTCAGAAAAATAGAAGCTGGTCAAGTCCAAATACCCCTCTACAAGAACGCTGGATGTAATGGCAGAGGGTACGCTGACCAGCAGAGAAATGTATTCACCAGACTACTAACTTCTCATTTCAACATTTTATACAACATCGCACTTGGAACTTCAGTTTCCTTTGAAGTAGATCAAGCGAAGAATCTGAAAATTACCTGA

Coding sequence (CDS)

ATGGCATCAAGCTCTGTCACGTCGACACGTGGCTTTTACTCATCCTGGACAAAAAAGGAAAACAAGAAATTTGAGGAAGCATTAGCCTTCTATGACCAGGACACACCAGACCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGAAAAACAGCTGAGGAAGCAAGAAGGCTCTATGAGCTACTAGTGCGAGATGTCAGAAAAATAGAAGCTGGTCAAGTCCAAATACCCCTCTACAAGAACGCTGGATGTAATGGCAGAGGGTACGCTGACCAGCAGAGAAATGTATTCACCAGACTACTAACTTCTCATTTCAACATTTTATACAACATCGCACTTGGAACTTCAGTTTCCTTTGAAGTAGATCAAGCGAAGAATCTGAAAATTACCTGA

Protein sequence

MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTRLLTSHFNILYNIALGTSVSFEVDQAKNLKIT

Homology

[Close]

BLAST of CmUC05G099980 vs. NCBI nr
Match: KGN60114.2 (hypothetical protein Csa_000871 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 2.0e-43
Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSSVTST GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRN 96
          LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRN
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRN 95

[Close]

BLAST of CmUC05G099980 vs. NCBI nr
Match: XP_008466554.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo] >KAA0041600.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-42
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSSVTST GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 95
          LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 94

[Close]

BLAST of CmUC05G099980 vs. NCBI nr
Match: XP_022936283.1 (protein RADIALIS-like 3 [Cucurbita moschata] >KAG6591311.1 Protein RADIALIS-like 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024194.1 Protein RADIALIS-like 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.5 bits (454), Expect = 1.9e-41
Identity = 90/100 (90.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MASSSVTS-TRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
           MASSSVTS  RGFYSSWTKKENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLY
Sbjct: 1   MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61  ELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTR 100
           ELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+  +FT+
Sbjct: 61  ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTK 100

[Close]

BLAST of CmUC05G099980 vs. NCBI nr
Match: XP_022155868.1 (protein RADIALIS-like 4 [Momordica charantia])

HSP 1 Score: 161.0 bits (406), Expect = 6.9e-36
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSSVTS RGFYSSWTK+ENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGR 88
          LL RDV+KIEAGQVQIPLYKN G NGR
Sbjct: 61 LLERDVKKIEAGQVQIPLYKNTGYNGR 87

[Close]

BLAST of CmUC05G099980 vs. NCBI nr
Match: XP_022940511.1 (protein RADIALIS-like 3 [Cucurbita moschata])

HSP 1 Score: 151.4 bits (381), Expect = 5.5e-33
Identity = 76/86 (88.37%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS T+  GFYSSWTK+ENKKFEEALAFYDQDTPDRFE VARAVGGGKTAEE RRLYE
Sbjct: 1  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNG 87
          LLVRDV KIEAGQVQIPLYKN G NG
Sbjct: 61 LLVRDVNKIEAGQVQIPLYKNVGYNG 86

[Close]

BLAST of CmUC05G099980 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-18
Identity = 52/85 (61.18%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 1  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MAS+S++S+    +SWT+KENK FE ALA YDQDTPDR+  VARAV GGK+AEE RR YE
Sbjct: 1  MASNSMSSS----ASWTRKENKLFERALATYDQDTPDRWHNVARAV-GGKSAEEVRRHYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCN 86
          LL+RDV  IE+G+   P Y++ G N
Sbjct: 61 LLIRDVNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of CmUC05G099980 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-17
Identity = 51/96 (53.12%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS++S      SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YE
Sbjct: 1  MASSSMSSQSS--GSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAG--CNGRGYADQQR 95
          LLV+D+  IE G V  P Y+ +G   NGR   +++R
Sbjct: 61 LLVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR 93

[Close]

BLAST of CmUC05G099980 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-17
Identity = 53/89 (59.55%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MAS S++S      SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y+
Sbjct: 1  MASGSMSSYGS--GSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 LLVRDVRKIEAGQVQIPLYK-NAGCNGRG 89
          LLVRD+  IE G V  P YK   G + RG
Sbjct: 61 LLVRDIESIENGHVPFPDYKTTTGNSNRG 86

[Close]

BLAST of CmUC05G099980 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-16
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = 0


Query: 6   VTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRD 65
           + STRG    W+ KENK FE ALA YD+DTPDR+  VARAV  G+T EE ++ YE+LV D
Sbjct: 1   MASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILVED 60

Query: 66  VRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTR 100
           ++ IE+G+V  P Y+  G N +    + RN+  R
Sbjct: 61  IKYIESGKVPFPNYRTTGGNMKTDEKRFRNLKIR 93

[Close]

BLAST of CmUC05G099980 vs. ExPASy Swiss-Prot
Match: Q1G3C4 (Protein RADIALIS-like 4 OS=Arabidopsis thaliana OX=3702 GN=RL4 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.3e-16
Identity = 46/81 (56.79%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS+++     SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R YE
Sbjct: 1  MASSSMST-----SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKN 82
          LL+RDV  IE+G+   P Y+N
Sbjct: 61 LLLRDVNDIESGRYPQPRYRN 75

[Close]

BLAST of CmUC05G099980 vs. ExPASy TrEMBL
Match: A0A5A7TE80 (Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00690 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.8e-43
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSSVTST GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 95
          LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 94

[Close]

BLAST of CmUC05G099980 vs. ExPASy TrEMBL
Match: A0A0A0LGL4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G857080 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.8e-43
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSSVTST GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 95
          LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 94

[Close]

BLAST of CmUC05G099980 vs. ExPASy TrEMBL
Match: A0A1S3CRN8 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103503940 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.8e-43
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSSVTST GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 95
          LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 94

[Close]

BLAST of CmUC05G099980 vs. ExPASy TrEMBL
Match: A0A6J1FCU5 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111442950 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 9.1e-42
Identity = 90/100 (90.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MASSSVTS-TRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
           MASSSVTS  RGFYSSWTKKENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLY
Sbjct: 1   MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61  ELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTR 100
           ELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+  +FT+
Sbjct: 61  ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTK 100

[Close]

BLAST of CmUC05G099980 vs. ExPASy TrEMBL
Match: A0A6J1DP29 (protein RADIALIS-like 4 OS=Momordica charantia OX=3673 GN=LOC111022857 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.3e-36
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSSVTS RGFYSSWTK+ENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGR 88
          LL RDV+KIEAGQVQIPLYKN G NGR
Sbjct: 61 LLERDVKKIEAGQVQIPLYKNTGYNGR 87

[Close]

BLAST of CmUC05G099980 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-18
Identity = 51/96 (53.12%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS++S      SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YE
Sbjct: 1  MASSSMSSQSS--GSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAG--CNGRGYADQQR 95
          LLV+D+  IE G V  P Y+ +G   NGR   +++R
Sbjct: 61 LLVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR 93

[Close]

BLAST of CmUC05G099980 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-18
Identity = 53/89 (59.55%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MAS S++S      SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y+
Sbjct: 1  MASGSMSSYGS--GSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 LLVRDVRKIEAGQVQIPLYK-NAGCNGRG 89
          LLVRD+  IE G V  P YK   G + RG
Sbjct: 61 LLVRDIESIENGHVPFPDYKTTTGNSNRG 86

[Close]

BLAST of CmUC05G099980 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-17
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 7   TSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDV 66
           +++R   S WT  +NK FE ALA YD+DTPDR+  VA+AV GGKT EE +R Y++LV D+
Sbjct: 3   SNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVEDL 62

Query: 67  RKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTRLLTSHFNILYN 111
             IE G+V +P YK    N R   D      T+ L    +I ++
Sbjct: 63  INIETGRVPLPNYKTFESNSRSINDFDTRYITKYLYMMLSIYFD 105

[Close]

BLAST of CmUC05G099980 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 85.1 bits (209), Expect = 4.5e-17
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 1  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS++S+    SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y+
Sbjct: 1  MASSSMSSS----SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYD 60

Query: 61 LLVRDVRKIEAGQVQIPLYK--NAGCNGRGYAD 92
          +LV D+  IE   V +P YK  + G   RG  D
Sbjct: 61 ILVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDD 88

[Close]

BLAST of CmUC05G099980 vs. TAIR 10
Match: AT2G18328.1 (RAD-like 4 )

HSP 1 Score: 85.1 bits (209), Expect = 4.5e-17
Identity = 46/81 (56.79%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS+++     SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R YE
Sbjct: 1  MASSSMST-----SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKN 82
          LL+RDV  IE+G+   P Y+N
Sbjct: 61 LLLRDVNDIESGRYPQPRYRN 75

The following BLAST results are available for this feature:

BLAST of CmUC05G099980 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60114.2	2.0e-43	96.84	hypothetical protein Csa_000871 [Cucumis sativus]	[more]
XP_008466554.1	1.0e-42	96.81	PREDICTED: protein RADIALIS-like 4 [Cucumis melo] >KAA0041600.1 protein RADIALIS...	[more]
XP_022936283.1	1.9e-41	90.00	protein RADIALIS-like 3 [Cucurbita moschata] >KAG6591311.1 Protein RADIALIS-like...	[more]
XP_022155868.1	6.9e-36	93.10	protein RADIALIS-like 4 [Momordica charantia]	[more]
XP_022940511.1	5.5e-33	88.37	protein RADIALIS-like 3 [Cucurbita moschata]	[more]

BLAST of CmUC05G099980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NNN0	1.8e-18	61.18	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
F4JVB8	1.5e-17	53.13	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	2.6e-17	59.55	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	4.8e-16	48.94	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q1G3C4	6.3e-16	56.79	Protein RADIALIS-like 4 OS=Arabidopsis thaliana OX=3702 GN=RL4 PE=2 SV=1	[more]

BLAST of CmUC05G099980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TE80	4.8e-43	96.81	Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LGL4	4.8e-43	96.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G857080 PE=4 SV=1	[more]
A0A1S3CRN8	4.8e-43	96.81	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103503940 PE=4 SV=1	[more]
A0A6J1FCU5	9.1e-42	90.00	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111442950 PE=4 SV=1	[more]
A0A6J1DP29	3.3e-36	93.10	protein RADIALIS-like 4 OS=Momordica charantia OX=3673 GN=LOC111022857 PE=4 SV=1	[more]

BLAST of CmUC05G099980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	1.1e-18	53.13	RAD-like 1	[more]
AT2G21650.1	1.8e-18	59.55	Homeodomain-like superfamily protein	[more]
AT1G75250.1	2.6e-17	44.23	RAD-like 6	[more]
AT1G19510.1	4.5e-17	52.69	RAD-like 5	[more]
AT2G18328.1	4.5e-17	56.79	RAD-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..65 e-value: 0.0068 score: 25.6
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 15..54 e-value: 0.00123954 score: 32.9326
None	No IPR available	GENE3D	1.10.10.60		coord: 7..76 e-value: 1.2E-17 score: 65.5
None	No IPR available	PANTHER	PTHR43952:SF51	SUBFAMILY NOT NAMED	coord: 1..82
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..82
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC05G099980.1	CmUC05G099980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity