CmUC05G099490 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC05G099490
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Nucleic acid-binding, OB-fold containing protein
Location	CmU531Chr05: 28936269 .. 28939451 (-)
RNA-Seq Expression	CmUC05G099490
Synteny	CmUC05G099490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCTCAGAAGGAGATGCACAGTTCACTTTGCGATTTGATTCCGTCGATTTTGTTTCAATCCAACATCTGCAACGCACGTGTTTAATAAACCTTAGCTGCTTTTACCTTCTTCAAGCTCTCTTTCTCCTCCGCCTGGTGTGGATTCTTCTCCTCCTTGTTTCGGTCGCCGTTTCAATGGAGGGGCTCAAGGTTTCGGATGCTAATATGGTTATTTACGTTCACCCATCCAAAAGTAAGAAGGTTTCGCAAGCGGTTCTTCGAGAGCTCGGCGCTATGCTTTTGAAGTAAGACTTCTTTAAGGCTCTCGACAATTCTAGTATCTAGTCTCTTTCAATCACAACCTTTTCCAGCTATTGACAGTGTTGCTTTGTTTGAATTGTTTTGTTGAATATCTTGATTGGGGATACTATGTGTTAATGACAGAGTTATACTAGTACAATCTTGCATTTAGCCGCCCTTTTAACCTAGAATTCAGATTCAGTTTTAGCTTAGAATTAGATGATTATTGTTTCTTTCCGCATTGCTATCAAGTGGATTTTTTTCTTTGCTGGCTTGCTATTCTGTACGGAAGAAATAAACACCTGGGTTGTGCTGTTGTTTATGAACTGATAATGTAAGCAGCGAGAATTTGAAAATAATGAAATCAAAGTTGTATTTCGTTTTCAAATATATGTTTGATAACATGTTAAGATATTGGATTCTAATTTAAACAATTGTTTAAAATGTGATTAATACTATATACTTATAAGTAATAAAACTAGTTGTATTTACTAATATTTAGTTGATAAAAAATTATTATTAATTTATCTATGAATATGATTTATGCGAAAAAAAAGTTCTATACTTATTTTCTTGTTATATTATATAATTTATAATACATGTACATGTTATATTTTTACAAAATGAATTGAGTTTATAACATGACATATTTTATTTCTAAATGTTTTTATTTTTTTAATATAATTCTGCATTTCAAATTTTAAAATTCAAATTTTGGATACCATGGAAATATAAAAATGTTGTTTTCAGTATTTGTACTGTTTGAATCACAAAATCCAAAATCAATTTTTAGAAATAGAATTCAAGTTGTCTGCCAAACACATATTTTCCGAACTCAGTAAATTTGAAAATATAAAATAGAATTTAGATTCTCTACCAAATAGATTCTAAGTCTCTGTAACTCTATTTTTTGAACTCAAAGGCGCGAAGTTAAAAACTTCCAGTGATTGTCATCGCTGCTTCTTTTGCTCCCATTTGATCAGTATTCAAGTTCATTGATAGGGCAGGTACCTGTGAAATTCGATCATTAACTGCATTTTTTTTGTATTGTGTTCCTCGTGTAGATTTGATGAAAAATTTGAAGGCGTGCTACTGGCTTATGAAGCCAAAATTGTTGATAAAAATGGGAAGATTCTATCTGGAGTGCATCCCTATTTTGGTGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAATATGCTATTAGGTTGGTTTCATATGATTCTCATTGTATGTGAAGGAGTTCGATTTGTGATTGGGTCTCTCCATTGTTTCCACTAGGAAAACAACACATCAAGTTGTTAATTAACAAACTTGCATTTTAACATTGTTAAGGTAGTTCATTGGATTATGATGGTAGACATATTAAATTGACTAATAGGAGTCCAAATTTGTTATTCATGCTTTGCTGATAGTTTTGTTATCACTTCAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCAATCCATGTTATTGTCTTAGGTTTTGCTTCTGCTGTAATAACCGATAAAGACATTCGCGACGAATTCAAGCATAGAACAGTATGTTTTCTTCAATGTACTTGTGAATTCATACCTTTCCCTTTGTTAGACATATAAGAAGGAAGTTTTTATGTTCTTGTCCTGATTGTATTGTGCATTGATTTTGACATAGAAACATGGAGAAGAAATGTTTGTCAGCAGAGCTCACAAGCACCATGTAATAAAGGTTGGGACAATGATACAATTTATGGTGAAGAGGTTAGATTTCTTTCCCTTTAATTACGCTTATTCTGTAACATTTAAGTGGAAAGTTAGTTTTCATCCAAATAATTGAGGGCCGGAACACCAAGCTCACATCCGATGGATAGTCTGCCATATTTATTAATATTTCCTGATTCCTGTTCTTCTTCAGCAATCTAAATACCTTGATGATGTAACAAGTGACTTAATTCAAACTTGCAGTTTTGATGAGGAAATATTGCATATCTCTGGATCTCTAGGTCCATCTTATACAGGGAGCATCCATTGGTTGGAGAAGAATTTGGTTGAAGGTTCAATAACTAATAGGCAAGAAACAAAATTCTAGGACGTTTTGTGCTATAATCCCCAAATCCCTTGTTCTTATCTCTTTCCAATTAATTTTGTAGCAGTAAAAAGAAGACGAGAGAAAAAGAGGGAGAGGTGATGTTGCAGGATAGCTTTGCCACGGATCCAAATGCACGTATCTTGAACAATGACCATCAGTCAAAAACCAAAAAGCAAAAAACTACCAGAATATCTTGAAGACTACTAAATTGTCAAACATAGATCGCTTTTCTATCAGGTAATTTTTCCTACTCCCTCAGTAGGATGGCTAAACTCTTGCTCTCAATTCATGCCTAAAATCTACATTAGCGAGAAACTTAGCTGAAAAGTAAGCTTGAATCCAATTGTATATAGGGTGATGATGAGATTCAAACTTCAAAGCAAAGATCCTCATTGTGTTTCCTTTAGTAAGAAAGGCTTGGGAGATGCACCTTGCACTTGAGAAGATCACATCCACTTAGATAATGACATAACTTTATATATCCGGGGTGTGGACAAATGCAGCACCCCATTTTTGTAACCGTTATGAAGAGATAGCCCAGCCCAAATGCCTATAGACCTTGATGGGCAAATGATCTTTTCAGCCCAATCTTGAGTTCAATATGCAGTTGGTAGGGAAGTTAATGACAGATGTCAGCAACCTAGACTTTGCTGAATATTGTCTGAGATTGAACATTATGTTTCTTTAATTTCATTCAAAATCACACACACACAAACACAACACCACACCGTTAGTTTATCAATCATTATAATGAGGATATGATTTGGGGTTTGCAAGTACATTCCATTTGCACCGTTGACTCATGATTGCCACTATATATATATCTC

mRNA sequence

GGCTCAGAAGGAGATGCACAGTTCACTTTGCGATTTGATTCCGTCGATTTTGTTTCAATCCAACATCTGCAACGCACGTGTTTAATAAACCTTAGCTGCTTTTACCTTCTTCAAGCTCTCTTTCTCCTCCGCCTGGTGTGGATTCTTCTCCTCCTTGTTTCGGTCGCCGTTTCAATGGAGGGGCTCAAGGTTTCGGATGCTAATATGGTTATTTACGTTCACCCATCCAAAAGTAAGAAGGTTTCGCAAGCGGTTCTTCGAGAGCTCGGCGCTATGCTTTTGAAATTTGATGAAAAATTTGAAGGCGTGCTACTGGCTTATGAAGCCAAAATTGTTGATAAAAATGGGAAGATTCTATCTGGAGTGCATCCCTATTTTGGTGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAATATGCTATTAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCAATCCATGTTATTGTCTTAGGTTTTGCTTCTGCTGTAATAACCGATAAAGACATTCGCGACGAATTCAAGCATAGAACAAAACATGGAGAAGAAATGTTTGTCAGCAGAGCTCACAAGCACCATGTAATAAAGGTTGGGACAATGATACAATTTATGGTGAAGAGCAGTAAAAAGAAGACGAGAGAAAAAGAGGGAGAGGTGATGTTGCAGGATAGCTTTGCCACGGATCCAAATGCACGTATCTTGAACAATGACCATCAGTCAAAAACCAAAAAGCAAAAAACTACCAGAATATCTTGAAGACTACTAAATTGTCAAACATAGATCGCTTTTCTATCAGGGTGATGATGAGATTCAAACTTCAAAGCAAAGATCCTCATTGTGTTTCCTTTAGTAAGAAAGGCTTGGGAGATGCACCTTGCACTTGAGAAGATCACATCCACTTAGATAATGACATAACTTTATATATCCGGGGTGTGGACAAATGCAGCACCCCATTTTTGTAACCGTTATGAAGAGATAGCCCAGCCCAAATGCCTATAGACCTTGATGGGCAAATGATCTTTTCAGCCCAATCTTGAGTTCAATATGCAGTTGGTAGGGAAGTTAATGACAGATGTCAGCAACCTAGACTTTGCTGAATATTGTCTGAGATTGAACATTATGTTTCTTTAATTTCATTCAAAATCACACACACACAAACACAACACCACACCGTTAGTTTATCAATCATTATAATGAGGATATGATTTGGGGTTTGCAAGTACATTCCATTTGCACCGTTGACTCATGATTGCCACTATATATATATCTC

Coding sequence (CDS)

GGCTCAGAAGGAGATGCACAGTTCACTTTGCGATTTGATTCCGTCGATTTTGTTTCAATCCAACATCTGCAACGCACGTGTTTAATAAACCTTAGCTGCTTTTACCTTCTTCAAGCTCTCTTTCTCCTCCGCCTGGTGTGGATTCTTCTCCTCCTTGTTTCGGTCGCCGTTTCAATGGAGGGGCTCAAGGTTTCGGATGCTAATATGGTTATTTACGTTCACCCATCCAAAAGTAAGAAGGTTTCGCAAGCGGTTCTTCGAGAGCTCGGCGCTATGCTTTTGAAATTTGATGAAAAATTTGAAGGCGTGCTACTGGCTTATGAAGCCAAAATTGTTGATAAAAATGGGAAGATTCTATCTGGAGTGCATCCCTATTTTGGTGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAATATGCTATTAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCAATCCATGTTATTGTCTTAGGTTTTGCTTCTGCTGTAATAACCGATAAAGACATTCGCGACGAATTCAAGCATAGAACAAAACATGGAGAAGAAATGTTTGTCAGCAGAGCTCACAAGCACCATGTAATAAAGGTTGGGACAATGATACAATTTATGGTGAAGAGCAGTAAAAAGAAGACGAGAGAAAAAGAGGGAGAGGTGATGTTGCAGGATAGCTTTGCCACGGATCCAAATGCACGTATCTTGAACAATGACCATCAGTCAAAAACCAAAAAGCAAAAAACTACCAGAATATCTTGA

Protein sequence

GSEGDAQFTLRFDSVDFVSIQHLQRTCLINLSCFYLLQALFLLRLVWILLLLVSVAVSMEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDKDIRDEFKHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKSSKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS

Homology

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BLAST of CmUC05G099490 vs. NCBI nr
Match: XP_038898978.1 (uncharacterized protein LOC120086413 isoform X3 [Benincasa hispida])

HSP 1 Score: 329.3 bits (843), Expect = 2.9e-86
Identity = 180/232 (77.59%), Postives = 189/232 (81.47%), Query Frame = 0


Query: 59  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 118
           M+GLKVSDANMV+YVHPSKSKKVSQAVLR LGAMLLKFDEKFEGVLLAYEAKI+DK  KI
Sbjct: 1   MDGLKVSDANMVVYVHPSKSKKVSQAVLRVLGAMLLKFDEKFEGVLLAYEAKIIDKIAKI 60

Query: 119 LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDKDIRDEF 178
           LSGVHPYFGVTIKAKLLLFSPKPNML+EGKVVKLRQESIHVIVLGFASAVIT++DIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLVEGKVVKLRQESIHVIVLGFASAVITNEDIRDEF 120

Query: 179 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVK---------------------------- 238
           KHRTKHGEEMFVSRAHKHHVIKVGTMI+F+VK                            
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHIAGSLVPSHTGSIHWLEKNS 180

Query: 239 -------SSKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 256
                  SSKKK RE EGEVMLQDS AT+ NA ILNNDHQSKTKKQKTTRIS
Sbjct: 181 VEGTVTSSSKKKMRENEGEVMLQDSVATEVNALILNNDHQSKTKKQKTTRIS 232

[Close]

BLAST of CmUC05G099490 vs. NCBI nr
Match: KAG7037901.1 (rpa43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 326.6 bits (836), Expect = 1.9e-85
Identity = 184/256 (71.88%), Postives = 202/256 (78.91%), Query Frame = 0


Query: 34  FYLLQALFLLRLVWILLLLVSVAVSMEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAML 93
           FYL  +LF     +     VS+AVSMEGLKVSDAN+VIYVHPSKSKKVSQAVLRELGAML
Sbjct: 14  FYLASSLFF----FFSSSFVSLAVSMEGLKVSDANLVIYVHPSKSKKVSQAVLRELGAML 73

Query: 94  LKFDEKFEGVLLAYEAKIVDKNGKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLR 153
           LKFDE+FEGVLLAYEA I+DK+ KILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLR
Sbjct: 74  LKFDERFEGVLLAYEANIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLR 133

Query: 154 QESIHVIVLGFASAVITDKDIRDEFKHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKS-- 213
           QESIHVIVLGFASAVITD+DIRDEFKHRTKHGEEMFVSRA+KHHVIKVGTM++F+VKS  
Sbjct: 134 QESIHVIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRANKHHVIKVGTMVRFLVKSFD 193

Query: 214 --------------------------------SKKKTREKEGEVMLQDSFATDPNARILN 256
                                           S+KKTR+ + E +LQDS ATD NA +LN
Sbjct: 194 EEILHISGSLVPSHTGSIHCLEKNSVEGSETRSRKKTRDNDKESLLQDSVATDVNALLLN 253

[Close]

BLAST of CmUC05G099490 vs. NCBI nr
Match: XP_008466500.1 (PREDICTED: uncharacterized protein LOC103503892 isoform X2 [Cucumis melo])

HSP 1 Score: 323.6 bits (828), Expect = 1.6e-84
Identity = 180/231 (77.92%), Postives = 186/231 (80.52%), Query Frame = 0


Query: 59  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 118
           MEGLKVSDANMV+YVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKI+DKN KI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 119 LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDKDIRDEF 178
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVIT +DIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 179 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKS--------------------------- 238
           KHRTKHGEEMFVSRAHKHHVIKVGTMI+F+VKS                           
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 239 -------SKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 256
                  SKKK RE EG VMLQD+  TD NA IL NDHQ KTKKQKTTRIS
Sbjct: 181 VEGSVSMSKKKMRENEGGVMLQDTVGTDVNAVIL-NDHQPKTKKQKTTRIS 230

[Close]

BLAST of CmUC05G099490 vs. NCBI nr
Match: XP_008466499.1 (PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo] >XP_016903501.1 PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo] >KAA0063270.1 putative DNA-directed RNA polymerase I subunit RPA43 [Cucumis melo var. makuwa] >TYK31504.1 putative DNA-directed RNA polymerase I subunit RPA43 [Cucumis melo var. makuwa])

HSP 1 Score: 323.2 bits (827), Expect = 2.1e-84
Identity = 180/232 (77.59%), Postives = 186/232 (80.17%), Query Frame = 0


Query: 59  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 118
           MEGLKVSDANMV+YVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKI+DKN KI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 119 LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDKDIRDEF 178
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVIT +DIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 179 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVK---------------------------- 238
           KHRTKHGEEMFVSRAHKHHVIKVGTMI+F+VK                            
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 239 -------SSKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 256
                  SSKKK RE EG VMLQD+  TD NA IL NDHQ KTKKQKTTRIS
Sbjct: 181 VEGSVSMSSKKKMRENEGGVMLQDTVGTDVNAVIL-NDHQPKTKKQKTTRIS 231

[Close]

BLAST of CmUC05G099490 vs. NCBI nr
Match: XP_011652444.1 (uncharacterized protein LOC101216589 [Cucumis sativus] >XP_031737671.1 uncharacterized protein LOC101216589 [Cucumis sativus] >XP_031737672.1 uncharacterized protein LOC101216589 [Cucumis sativus] >KGN60019.1 hypothetical protein Csa_001209 [Cucumis sativus])

HSP 1 Score: 322.8 bits (826), Expect = 2.7e-84
Identity = 176/231 (76.19%), Postives = 184/231 (79.65%), Query Frame = 0


Query: 59  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 118
           MEGLKVSDANMV+YVHPSKSKK+SQAVLRELGAMLLKFDEKFEGVLLAYEAKI+DKN KI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKISQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 119 LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDKDIRDEF 178
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVIT +DIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 179 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKS--------------------------- 238
           KHRTKHGEEMFVSRAHKHH+IKVGTMI+ +VKS                           
Sbjct: 121 KHRTKHGEEMFVSRAHKHHIIKVGTMIRLLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 239 -------SKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 256
                  SK+K RE EG V LQDS  TD NA ILNNDHQ KTKKQK TRIS
Sbjct: 181 VEGSVTMSKRKMRENEGGVTLQDSVGTDVNAVILNNDHQPKTKKQKPTRIS 231

[Close]

BLAST of CmUC05G099490 vs. ExPASy Swiss-Prot
Match: O43036 (DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa43 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.4e-05
Identity = 38/165 (23.03%), Postives = 84/165 (50.91%), Query Frame = 0


Query: 68  NMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYE-AKIVDKNGKILSGVHPYF 127
           ++ + + P  S+    A+   + +M+L    +  G++LAY+  + ++K+ K++    P+ 
Sbjct: 12  DLYLSIAPGHSRDPLNAIQEHMDSMILSKLPRINGIVLAYDNIRFLEKSAKVMYD-SPFS 71

Query: 128 GVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDKDI-RDEFKHRTKHG 187
            + ++  +L+FSPK    LEGK+  +    I +++LG  +A I  K I +D         
Sbjct: 72  FIWVRVDVLVFSPKKGDCLEGKINLVSPSHIGLLILGIFNASIPRKSIPKDWIFIEPDTT 131

Query: 188 EEMFVSRAHKHHVIKVGTMIQFMVKSSKKKTREKEGEVMLQDSFA 231
           EE    + +  ++++ G  ++F+V   +++     G  M+Q + A
Sbjct: 132 EEQGRWKTNDGNILEPGKDLEFVVDGIQREA----GLTMVQGTLA 171

[Close]

BLAST of CmUC05G099490 vs. ExPASy TrEMBL
Match: A0A1S3CRF8 (uncharacterized protein LOC103503892 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503892 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 7.7e-85
Identity = 180/231 (77.92%), Postives = 186/231 (80.52%), Query Frame = 0


Query: 59  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 118
           MEGLKVSDANMV+YVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKI+DKN KI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 119 LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDKDIRDEF 178
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVIT +DIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 179 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKS--------------------------- 238
           KHRTKHGEEMFVSRAHKHHVIKVGTMI+F+VKS                           
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 239 -------SKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 256
                  SKKK RE EG VMLQD+  TD NA IL NDHQ KTKKQKTTRIS
Sbjct: 181 VEGSVSMSKKKMRENEGGVMLQDTVGTDVNAVIL-NDHQPKTKKQKTTRIS 230

[Close]

BLAST of CmUC05G099490 vs. ExPASy TrEMBL
Match: A0A1S4E5I5 (uncharacterized protein LOC103503892 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503892 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.0e-84
Identity = 180/232 (77.59%), Postives = 186/232 (80.17%), Query Frame = 0


Query: 59  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 118
           MEGLKVSDANMV+YVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKI+DKN KI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 119 LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDKDIRDEF 178
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVIT +DIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 179 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVK---------------------------- 238
           KHRTKHGEEMFVSRAHKHHVIKVGTMI+F+VK                            
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 239 -------SSKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 256
                  SSKKK RE EG VMLQD+  TD NA IL NDHQ KTKKQKTTRIS
Sbjct: 181 VEGSVSMSSKKKMRENEGGVMLQDTVGTDVNAVIL-NDHQPKTKKQKTTRIS 231

[Close]

BLAST of CmUC05G099490 vs. ExPASy TrEMBL
Match: A0A5D3E6A0 (Putative DNA-directed RNA polymerase I subunit RPA43 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008220 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.0e-84
Identity = 180/232 (77.59%), Postives = 186/232 (80.17%), Query Frame = 0


Query: 59  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 118
           MEGLKVSDANMV+YVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKI+DKN KI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 119 LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDKDIRDEF 178
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVIT +DIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 179 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVK---------------------------- 238
           KHRTKHGEEMFVSRAHKHHVIKVGTMI+F+VK                            
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 239 -------SSKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 256
                  SSKKK RE EG VMLQD+  TD NA IL NDHQ KTKKQKTTRIS
Sbjct: 181 VEGSVSMSSKKKMRENEGGVMLQDTVGTDVNAVIL-NDHQPKTKKQKTTRIS 231

[Close]

BLAST of CmUC05G099490 vs. ExPASy TrEMBL
Match: A0A0A0LGG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866520 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 1.3e-84
Identity = 176/231 (76.19%), Postives = 184/231 (79.65%), Query Frame = 0


Query: 59  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 118
           MEGLKVSDANMV+YVHPSKSKK+SQAVLRELGAMLLKFDEKFEGVLLAYEAKI+DKN KI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKISQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 119 LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDKDIRDEF 178
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVIT +DIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 179 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKS--------------------------- 238
           KHRTKHGEEMFVSRAHKHH+IKVGTMI+ +VKS                           
Sbjct: 121 KHRTKHGEEMFVSRAHKHHIIKVGTMIRLLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 239 -------SKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 256
                  SK+K RE EG V LQDS  TD NA ILNNDHQ KTKKQK TRIS
Sbjct: 181 VEGSVTMSKRKMRENEGGVTLQDSVGTDVNAVILNNDHQPKTKKQKPTRIS 231

[Close]

BLAST of CmUC05G099490 vs. ExPASy TrEMBL
Match: A0A6J1D5Y9 (uncharacterized protein LOC111016757 OS=Momordica charantia OX=3673 GN=LOC111016757 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 2.2e-84
Identity = 173/232 (74.57%), Postives = 187/232 (80.60%), Query Frame = 0


Query: 59  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 118
           MEGLKVSDAN+V+YVHPSKSKKVSQAVLRELGAMLLKFDE+FEGVLLAY+AKI DK+ KI
Sbjct: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60

Query: 119 LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDKDIRDEF 178
           LSGVHPYFGVT+KAKLLLFSPKPNMLLEGKVVKLRQES+HVIVLGFASA ITD+DIRDEF
Sbjct: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120

Query: 179 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKS--------------------------- 238
           KHRTKH EEMFVSRAHKHHVIKVGTMI+F+VKS                           
Sbjct: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 239 --------SKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 256
                    +KKTR+ EGE +LQDS ATD NA ILNNDHQSKTKKQKT+RIS
Sbjct: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS 232

[Close]

BLAST of CmUC05G099490 vs. TAIR 10
Match: AT1G75670.1 (DNA-directed RNA polymerases )

HSP 1 Score: 189.9 bits (481), Expect = 2.5e-48
Identity = 88/170 (51.76%), Postives = 130/170 (76.47%), Query Frame = 0


Query: 59  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 118
           MEGLK+S+A ++I++HPS+S+ V Q + REL ++L +++E F+GVLLAY+A +  K  KI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 119 LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDKDIRDEF 178
           L+G+HPYFGV +  +LLLF PKP   +EGK+VK+  ESIHVIVLGF++AVITD DIR+EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 179 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKSSKKKTREKEGEVMLQDS 229
           K+R + GE  FVSR+HK H +K+GTM++  V+S  ++     G ++ +++
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENT 170

[Close]

BLAST of CmUC05G099490 vs. TAIR 10
Match: AT1G75670.2 (DNA-directed RNA polymerases )

HSP 1 Score: 189.9 bits (481), Expect = 2.5e-48
Identity = 88/170 (51.76%), Postives = 130/170 (76.47%), Query Frame = 0


Query: 59  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 118
           MEGLK+S+A ++I++HPS+S+ V Q + REL ++L +++E F+GVLLAY+A +  K  KI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 119 LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDKDIRDEF 178
           L+G+HPYFGV +  +LLLF PKP   +EGK+VK+  ESIHVIVLGF++AVITD DIR+EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 179 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKSSKKKTREKEGEVMLQDS 229
           K+R + GE  FVSR+HK H +K+GTM++  V+S  ++     G ++ +++
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENT 170

The following BLAST results are available for this feature:

BLAST of CmUC05G099490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898978.1	2.9e-86	77.59	uncharacterized protein LOC120086413 isoform X3 [Benincasa hispida]	[more]
KAG7037901.1	1.9e-85	71.88	rpa43, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008466500.1	1.6e-84	77.92	PREDICTED: uncharacterized protein LOC103503892 isoform X2 [Cucumis melo]	[more]
XP_008466499.1	2.1e-84	77.59	PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo] >XP_01...	[more]
XP_011652444.1	2.7e-84	76.19	uncharacterized protein LOC101216589 [Cucumis sativus] >XP_031737671.1 uncharact...	[more]

BLAST of CmUC05G099490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O43036	3.4e-05	23.03	DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain...	[more]

BLAST of CmUC05G099490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CRF8	7.7e-85	77.92	uncharacterized protein LOC103503892 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E5I5	1.0e-84	77.59	uncharacterized protein LOC103503892 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3E6A0	1.0e-84	77.59	Putative DNA-directed RNA polymerase I subunit RPA43 OS=Cucumis melo var. makuwa...	[more]
A0A0A0LGG8	1.3e-84	76.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866520 PE=4 SV=1	[more]
A0A6J1D5Y9	2.2e-84	74.57	uncharacterized protein LOC111016757 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of CmUC05G099490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75670.1	2.5e-48	51.76	DNA-directed RNA polymerases	[more]
AT1G75670.2	2.5e-48	51.76	DNA-directed RNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 56..141 e-value: 2.3E-6 score: 29.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..255
None	No IPR available	PANTHER	PTHR12709:SF5	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43	coord: 56..247
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 56..247

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC05G099490.1	CmUC05G099490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0005736	RNA polymerase I complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity