CmUC05G098060 (gene) Watermelon (USVL531) v1

Overview
NameCmUC05G098060
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationCmU531Chr05: 27619886 .. 27621476 (-)
RNA-Seq ExpressionCmUC05G098060
SyntenyCmUC05G098060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGAACAAAATATCTCCCACTATTGTTACATATGGCACCCTTGTAGAAGGCTATTGTCGAATGTGTCGTGTTGAAAGCCATTGAATTGGTAGATGAGATTAGGGGAGAATGTATTAAGCCAAATGCAATCATATATAACCCAATAGTTGATGCAGGGGAAGTCGGGAGGCATTGGGAATGATGGAGCGGTTCACGGTTTTGGAGCAAGGCCCTACTATCTCAACGTACAATTCTCTTATCAAGGGGTATTGCAATGCATGAGATCTTTTTGGGGCAAGCAAGATCCTTAAATCGATGATTGGTAGAGGATTCACTCCGACCCCGACTACCTATAACTATTTCTTCAGATTCTTCTCGAAGTATGGTAAAATTGAGGAGGGTATGAACCTTTACAATAAAATAATTGAATCAGGATATGCATCAAATAAACTTACAGATCACTTGTTGCTGAAGATGTTATGTGAAGAAGAGAGATTAAACATTGCAATTCAAGTTTGCAATGAAATGAAGGCTGTAGGGTTTGACAAGGACTTGGCTACAAGCACCATGTTAGTTCATTTGCTTTGCAATATGCATAAATTTGAAGAAGCTTTTGAAGAATTTGAGCACATGATTCGTCAAGGAATTGTTCCTCAATATCATACTTATTGCAGATTGCATGATGAATTTATGAAACGTTGATTGACAAAAATGGCATCAAGTTACAGGGAATGATGTATTTGGTTCCTCATTTAGAGAAGTTACCCGATACGTATAATCAAACTCTTGATTCTATCTGTGCTAGAAAACATCTATTATTCGTAAAGCTGAGGCAATGTCTGAAATATTGAAGGTCTGTAAATACCCTAGGGAGCTTGTCAAACGTAGAAGTCCCTCTGAAAATGTTGTATTTAGTGCAAATAGGTTGATAGATGATATCAAGAAGAAAACCAACCCTGTGACTGTTGAACCCATCTACTTAAATTTTGCCGTTGTTGGTAAATTACTTCTCATTAGTTGAACTTAAAATGACTTCCGCAACATAATTTCTTCATTGGGATCTTTGGAGAAACTCCAACAAATGGATCAGTTTCACTGGCACGTGCAATTATCTAGCGAGGGGAGAAACACACTTTGTGCGGATTTAGTGTTTTTAAGGTGAACGGGGGCACATTCGTATATCGAATGAAGAGATCACAAGAATTTAGTTGGACCTATGATTTTTTTATACGTTTGAATGCTGAACATAATGTAAATCCAGTTGATTTAATCTCTTCTTCCAAATTATTATTATTAGGCTATTTGAAATACAACAAAGAGTTATTGAAGCAAGGACCAAGTTGAATGTTGGCGATCAACTTTAGCTATTAAACATCATTACTGTAATCCAAGACTCCTATTTTGATTTTTCCATTTCATTTTGCTCATCTACTATATCTGCAAAAGCTTTTATCCCACCGGGGATCAAAAACCATTTGTTAAACTTCAACTTTGAAGCTAGAGAGAAAAACAAGGATGGGAACGTTGAATTCAAGGACATGACGTATGGATGTTGCTGAAACGCAAGGTTTTTCAACAGAATGATGATGAAACACACAATTGTTAG

mRNA sequence

ATGAAGAAGAACAAAATATCTCCCACTATTGTTACATATGGCACCCTTGTAGAAGGCTATTGTCGAATGGGAAGTCGGGAGGCATTGGGAATGATGGAGCGGTTCACGGTTTTGGAGCAAGGCCCTACTATCTCAACGTACAATTCTCTTATCAAGGGCAAGATCCTTAAATCGATGATTGGTAGAGGATTCACTCCGACCCCGACTACCTATAACTATTTCTTCAGATTCTTCTCGAAGTATGGTAAAATTGAGGAGGATCACTTGTTGCTGAAGATGTTATGTGAAGAAGAGAGATTAAACATTGCAATTCAAGTTTGCAATGAAATGAAGGCTGTAGGGTTTGACAAGGACTTGGCTACAAGCACCATGTTAGTTCATTTGCTTTGCAATATGCATAAATTTGAAGAAGCTTTTGAAGAATTTGAGCACATGATTCGTCAAGGAATTAAAACATCTATTATTCGTAAAGCTGAGGCAATGTCTGAAATATTGAAGGTCTGTAAATACCCTAGGGAGCTTGTCAAACGTAGAAGTCCCTCTGAAAATGTTGTATTTAGTGCAAATAGGTTGATAGATGATATCAAGAAGAAAACCAACCCTGTGACTGTTGAACCCATCTACTTAAATTTTGCCGTTGTTGGACATGACGTATGGATGTTGCTGAAACGCAAGGTTTTTCAACAGAATGATGATGAAACACACAATTGTTAG

Coding sequence (CDS)

ATGAAGAAGAACAAAATATCTCCCACTATTGTTACATATGGCACCCTTGTAGAAGGCTATTGTCGAATGGGAAGTCGGGAGGCATTGGGAATGATGGAGCGGTTCACGGTTTTGGAGCAAGGCCCTACTATCTCAACGTACAATTCTCTTATCAAGGGCAAGATCCTTAAATCGATGATTGGTAGAGGATTCACTCCGACCCCGACTACCTATAACTATTTCTTCAGATTCTTCTCGAAGTATGGTAAAATTGAGGAGGATCACTTGTTGCTGAAGATGTTATGTGAAGAAGAGAGATTAAACATTGCAATTCAAGTTTGCAATGAAATGAAGGCTGTAGGGTTTGACAAGGACTTGGCTACAAGCACCATGTTAGTTCATTTGCTTTGCAATATGCATAAATTTGAAGAAGCTTTTGAAGAATTTGAGCACATGATTCGTCAAGGAATTAAAACATCTATTATTCGTAAAGCTGAGGCAATGTCTGAAATATTGAAGGTCTGTAAATACCCTAGGGAGCTTGTCAAACGTAGAAGTCCCTCTGAAAATGTTGTATTTAGTGCAAATAGGTTGATAGATGATATCAAGAAGAAAACCAACCCTGTGACTGTTGAACCCATCTACTTAAATTTTGCCGTTGTTGGACATGACGTATGGATGTTGCTGAAACGCAAGGTTTTTCAACAGAATGATGATGAAACACACAATTGTTAG

Protein sequence

MKKNKISPTIVTYGTLVEGYCRMGSREALGMMERFTVLEQGPTISTYNSLIKGKILKSMIGRGFTPTPTTYNYFFRFFSKYGKIEEDHLLLKMLCEEERLNIAIQVCNEMKAVGFDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGIKTSIIRKAEAMSEILKVCKYPRELVKRRSPSENVVFSANRLIDDIKKKTNPVTVEPIYLNFAVVGHDVWMLLKRKVFQQNDDETHNC
Homology
BLAST of CmUC05G098060 vs. NCBI nr
Match: KAG6608175.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 307.8 bits (787), Expect = 8.3e-80
Identity = 190/378 (50.26%), Postives = 205/378 (54.23%), Query Frame = 0

Query: 1   MKKNKISPTIVTYGTLVEGYCRMGS----------------------------------- 60
           MKKNKISPT+VTYGTLVEGYCRM                                     
Sbjct: 293 MKKNKISPTVVTYGTLVEGYCRMRRVEIAIELVDEMRGEGIEPNAIIYNPIVDALGESGR 352

Query: 61  -REALGMMERFTVLEQGPTISTYNSLIKG-----------KILKSMIGRGFTPTPTTYNY 120
            +EALGMMERFTVLEQGPTISTYNSLIKG           KILK M+ RGFTPTPTTYNY
Sbjct: 353 FKEALGMMERFTVLEQGPTISTYNSLIKGYCKAGDLSGASKILKLMMNRGFTPTPTTYNY 412

Query: 121 FFRFFSKYGKIEED-------------------HLLLKMLCEEERLNIAIQVCNEMKAVG 180
           FFRFFSKYGKIEE                    HLLLKMLCEEERLN+A+QVCNEMKA G
Sbjct: 413 FFRFFSKYGKIEEGMNLYNKMIESGYTPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARG 472

Query: 181 FDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGI------------------------ 238
           FD DLATSTML+HLLC MHK EEAF EFEHMI +GI                        
Sbjct: 473 FDMDLATSTMLIHLLCKMHKLEEAFAEFEHMICRGIVPQYLTFCRLLDEFSKRGLTKMAS 532

BLAST of CmUC05G098060 vs. NCBI nr
Match: XP_004136469.1 (pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Cucumis sativus] >KGN60123.1 hypothetical protein Csa_001682 [Cucumis sativus])

HSP 1 Score: 303.5 bits (776), Expect = 1.6e-78
Identity = 178/323 (55.11%), Postives = 191/323 (59.13%), Query Frame = 0

Query: 1   MKKNKISPTIVTYGTLVEGYCRMGS----------------------------------- 60
           MKKNKISPT+VTYGTL+EGYCRM S                                   
Sbjct: 293 MKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIVYNPIVDALGEAGR 352

Query: 61  -REALGMMERFTVLEQGPTISTYNSLIKG-----------KILKSMIGRGFTPTPTTYNY 120
            +EALGMMERF VLEQGPTISTYNSL+KG           KILK MIGRGFTPTPTTYNY
Sbjct: 353 FKEALGMMERFMVLEQGPTISTYNSLVKGYCKAGDLSGASKILKMMIGRGFTPTPTTYNY 412

Query: 121 FFRFFSKYGKIEED-------------------HLLLKMLCEEERLNIAIQVCNEMKAVG 180
           FFRFFSKYGKIEE                    HLLLKMLCEEERLN+A+QVCNEMKA G
Sbjct: 413 FFRFFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARG 472

Query: 181 FDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGI------------------------ 205
           FD DLATSTML+HLLC MHKFEEAF EFEHMI +GI                        
Sbjct: 473 FDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEFMKRGLTKMAS 532

BLAST of CmUC05G098060 vs. NCBI nr
Match: XP_008466375.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Cucumis melo])

HSP 1 Score: 300.4 bits (768), Expect = 1.3e-77
Identity = 177/322 (54.97%), Postives = 188/322 (58.39%), Query Frame = 0

Query: 1   MKKNKISPTIVTYGTLVEGYCRMGS----------------------------------- 60
           MKKN ISPT+VTYGTL+EGYCRM S                                   
Sbjct: 293 MKKNNISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIIYNPIVDALGEAGR 352

Query: 61  -REALGMMERFTVLEQGPTISTYNSLIKG-----------KILKSMIGRGFTPTPTTYNY 120
            +EALGMMERF VLEQGPTISTYNSLIKG           KILK MIGRGFTPTPTTYNY
Sbjct: 353 FKEALGMMERFMVLEQGPTISTYNSLIKGYCKAGDLSGASKILKMMIGRGFTPTPTTYNY 412

Query: 121 FFRFFSKYGKIEED-------------------HLLLKMLCEEERLNIAIQVCNEMKAVG 180
           FFRFFSKYGKIEE                    HLLLKMLCEEERLN+A+QVCNEMKA G
Sbjct: 413 FFRFFSKYGKIEESMNLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARG 472

Query: 181 FDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGI------------------------ 204
           FD DLATSTML+HLLC MHKFEEAF EFEHMI +GI                        
Sbjct: 473 FDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEFLKRGLTKMAS 532

BLAST of CmUC05G098060 vs. NCBI nr
Match: KAA0038793.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK31414.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 300.4 bits (768), Expect = 1.3e-77
Identity = 177/322 (54.97%), Postives = 188/322 (58.39%), Query Frame = 0

Query: 1   MKKNKISPTIVTYGTLVEGYCRMGS----------------------------------- 60
           MKKN ISPT+VTYGTL+EGYCRM S                                   
Sbjct: 309 MKKNNISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIIYNPIVDALGEAGR 368

Query: 61  -REALGMMERFTVLEQGPTISTYNSLIKG-----------KILKSMIGRGFTPTPTTYNY 120
            +EALGMMERF VLEQGPTISTYNSLIKG           KILK MIGRGFTPTPTTYNY
Sbjct: 369 FKEALGMMERFMVLEQGPTISTYNSLIKGYCKAGDLSGASKILKMMIGRGFTPTPTTYNY 428

Query: 121 FFRFFSKYGKIEED-------------------HLLLKMLCEEERLNIAIQVCNEMKAVG 180
           FFRFFSKYGKIEE                    HLLLKMLCEEERLN+A+QVCNEMKA G
Sbjct: 429 FFRFFSKYGKIEESMNLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARG 488

Query: 181 FDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGI------------------------ 204
           FD DLATSTML+HLLC MHKFEEAF EFEHMI +GI                        
Sbjct: 489 FDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEFLKRGLTKMAS 548

BLAST of CmUC05G098060 vs. NCBI nr
Match: XP_022940385.1 (pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Cucurbita moschata])

HSP 1 Score: 297.7 bits (761), Expect = 8.6e-77
Identity = 177/323 (54.80%), Postives = 188/323 (58.20%), Query Frame = 0

Query: 1   MKKNKISPTIVTYGTLVEGYCRMGS----------------------------------- 60
           MKKNKISPT+VTYGTLVEGYCRM                                     
Sbjct: 293 MKKNKISPTVVTYGTLVEGYCRMRRVEIAIELVDEMRGEGIEPNAIIYNPIVDALGESGR 352

Query: 61  -REALGMMERFTVLEQGPTISTYNSLIKG-----------KILKSMIGRGFTPTPTTYNY 120
            +EALGMMERFTVLEQGPTISTYNSLIKG           KILK M+ RGFTPTPTTYNY
Sbjct: 353 FKEALGMMERFTVLEQGPTISTYNSLIKGYCKAGDLSGASKILKLMMNRGFTPTPTTYNY 412

Query: 121 FFRFFSKYGKIEED-------------------HLLLKMLCEEERLNIAIQVCNEMKAVG 180
           FFRFFSKYGKIEE                    HLLLKMLCEEERLN+A+QVCNEMKA G
Sbjct: 413 FFRFFSKYGKIEEGMNLYNKMIESGYTPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARG 472

Query: 181 FDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGI------------------------ 205
           FD DLATSTML+HLLC MHKFEEAF EFEHMI +GI                        
Sbjct: 473 FDMDLATSTMLIHLLCKMHKFEEAFAEFEHMICRGIVPQYLTFCRLLDEFSKRGLTKMAL 532

BLAST of CmUC05G098060 vs. ExPASy Swiss-Prot
Match: Q9LFM6 (Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g11310 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.6e-44
Identity = 117/319 (36.68%), Postives = 149/319 (46.71%), Query Frame = 0

Query: 1   MKKNKISPTIVTYGTLVEGYCRMGS----------------------------------- 60
           MK   + PT+VTYGTL+EGYCRM                                     
Sbjct: 276 MKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAGR 335

Query: 61  -REALGMMERFTVLEQGPTISTYNSLIK-----------GKILKSMIGRGFTPTPTTYNY 120
             EALGMMERF V E GPTI TYNSL+K            KILK M+ RG  PT TTYN+
Sbjct: 336 LSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYNH 395

Query: 121 FFRFFSKYGKIEED-------------------HLLLKMLCEEERLNIAIQVCNEMKAVG 180
           FF++FSK+ K EE                    HL+LKMLCE+ +L++A+QV  EMK  G
Sbjct: 396 FFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRG 455

Query: 181 FDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGI------------------------ 199
            D DL T+TML+HLLC +   EEAFEEF++ +R+GI                        
Sbjct: 456 IDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMSDMAK 515

BLAST of CmUC05G098060 vs. ExPASy Swiss-Prot
Match: Q9LSL9 (Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana OX=3702 GN=At5g65560 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-11
Identity = 49/186 (26.34%), Postives = 82/186 (44.09%), Query Frame = 0

Query: 1   MKKNKISPTIVTYGTLVEGYCRMGS-REALGMMERFTVLEQGPTISTYNSLIKG------ 60
           M ++K+ P I TY  +V GYC++G+  EA   + +       P   TY SLI G      
Sbjct: 209 MLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKD 268

Query: 61  -----KILKSMIGRGFTPTPTTYNYFF----------RFFSKYGKIEEDH---------L 120
                K+   M  +G       Y +                 + K+++D          +
Sbjct: 269 LDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTV 328

Query: 121 LLKMLCEEERLNIAIQVCNEMKAVGFDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQG 156
           L+K LC  ER + A+ +  EM+  G   ++ T T+L+  LC+  KFE+A E    M+ +G
Sbjct: 329 LIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKG 388

BLAST of CmUC05G098060 vs. ExPASy Swiss-Prot
Match: Q9LPX2 (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12775 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-11
Identity = 50/181 (27.62%), Postives = 82/181 (45.30%), Query Frame = 0

Query: 1   MKKNKISPTIVTYGTLVEGYCRMGSRE-ALGMMERFTVLEQGPTISTYNSLIKG------ 60
           M++  I    V Y  +++G C+ GS + A  +     +      I TYN+LI G      
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR 313

Query: 61  -----KILKSMIGRGFTPTPTTYNYFFRFFSKYGKIEE-DHLLLKML------------- 120
                K+L+ MI R  +P   T++     F K GK+ E D LL +M+             
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNS 373

Query: 121 -----CEEERLNIAIQVCNEMKAVGFDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQG 151
                C+E RL  AIQ+ + M + G D D+ T  +L++  C  ++ ++  E F  M  +G
Sbjct: 374 LIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRG 433

BLAST of CmUC05G098060 vs. ExPASy Swiss-Prot
Match: Q3EDF8 (Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana OX=3702 GN=At1g09900 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.0e-11
Identity = 42/167 (25.15%), Postives = 81/167 (48.50%), Query Frame = 0

Query: 1   MKKNKISPTIVTYGTLVEGYCRMGS-REALGMMERFTVLEQGPTISTYNSLIKG------ 60
           + +  +SP +VTY T++   C  G  ++A+ +++R    +  P + TY  LI+       
Sbjct: 195 LDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSG 254

Query: 61  -----KILKSMIGRGFTPTPTTYNYFFRFFSKYGKIEEDHLLLKMLCEEERLNIAIQVCN 120
                K+L  M  RG TP   TYN                +L+  +C+E RL+ AI+  N
Sbjct: 255 VGHAMKLLDEMRDRGCTPDVVTYN----------------VLVNGICKEGRLDEAIKFLN 314

Query: 121 EMKAVGFDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGIKTSII 156
           +M + G   ++ T  +++  +C+  ++ +A +    M+R+G   S++
Sbjct: 315 DMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

BLAST of CmUC05G098060 vs. ExPASy Swiss-Prot
Match: P0C7Q7 (Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12700 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-10
Identity = 49/192 (25.52%), Postives = 87/192 (45.31%), Query Frame = 0

Query: 6   ISPTIVTYGTLVEGYCRMGS-REALGMMERFTVLEQGPTISTYNSLIKG----------- 65
           ISP I+TY TL++GYC      EA  M++     +  P I T+ SLIKG           
Sbjct: 329 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGM 388

Query: 66  KILKSMIGRGFTPTPTTYNYFFRFFSKYGKIE---------EDH----------LLLKML 125
           K+ +++  RG      TY+   + F + GKI+           H          +LL  L
Sbjct: 389 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 448

Query: 126 CEEERLNIAIQVCNEMKAVGFDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGIKTSI 167
           C+  +L  A+++  +++    D  +   T ++  +C   K E+A+  F  +  +G+K ++
Sbjct: 449 CDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNV 508

BLAST of CmUC05G098060 vs. ExPASy TrEMBL
Match: A0A0A0LEE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878910 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 7.6e-79
Identity = 178/323 (55.11%), Postives = 191/323 (59.13%), Query Frame = 0

Query: 1   MKKNKISPTIVTYGTLVEGYCRMGS----------------------------------- 60
           MKKNKISPT+VTYGTL+EGYCRM S                                   
Sbjct: 293 MKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIVYNPIVDALGEAGR 352

Query: 61  -REALGMMERFTVLEQGPTISTYNSLIKG-----------KILKSMIGRGFTPTPTTYNY 120
            +EALGMMERF VLEQGPTISTYNSL+KG           KILK MIGRGFTPTPTTYNY
Sbjct: 353 FKEALGMMERFMVLEQGPTISTYNSLVKGYCKAGDLSGASKILKMMIGRGFTPTPTTYNY 412

Query: 121 FFRFFSKYGKIEED-------------------HLLLKMLCEEERLNIAIQVCNEMKAVG 180
           FFRFFSKYGKIEE                    HLLLKMLCEEERLN+A+QVCNEMKA G
Sbjct: 413 FFRFFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARG 472

Query: 181 FDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGI------------------------ 205
           FD DLATSTML+HLLC MHKFEEAF EFEHMI +GI                        
Sbjct: 473 FDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEFMKRGLTKMAS 532

BLAST of CmUC05G098060 vs. ExPASy TrEMBL
Match: A0A5D3E616 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007230 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 6.4e-78
Identity = 177/322 (54.97%), Postives = 188/322 (58.39%), Query Frame = 0

Query: 1   MKKNKISPTIVTYGTLVEGYCRMGS----------------------------------- 60
           MKKN ISPT+VTYGTL+EGYCRM S                                   
Sbjct: 309 MKKNNISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIIYNPIVDALGEAGR 368

Query: 61  -REALGMMERFTVLEQGPTISTYNSLIKG-----------KILKSMIGRGFTPTPTTYNY 120
            +EALGMMERF VLEQGPTISTYNSLIKG           KILK MIGRGFTPTPTTYNY
Sbjct: 369 FKEALGMMERFMVLEQGPTISTYNSLIKGYCKAGDLSGASKILKMMIGRGFTPTPTTYNY 428

Query: 121 FFRFFSKYGKIEED-------------------HLLLKMLCEEERLNIAIQVCNEMKAVG 180
           FFRFFSKYGKIEE                    HLLLKMLCEEERLN+A+QVCNEMKA G
Sbjct: 429 FFRFFSKYGKIEESMNLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARG 488

Query: 181 FDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGI------------------------ 204
           FD DLATSTML+HLLC MHKFEEAF EFEHMI +GI                        
Sbjct: 489 FDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEFLKRGLTKMAS 548

BLAST of CmUC05G098060 vs. ExPASy TrEMBL
Match: A0A1S3CR47 (pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103503801 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 6.4e-78
Identity = 177/322 (54.97%), Postives = 188/322 (58.39%), Query Frame = 0

Query: 1   MKKNKISPTIVTYGTLVEGYCRMGS----------------------------------- 60
           MKKN ISPT+VTYGTL+EGYCRM S                                   
Sbjct: 293 MKKNNISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIIYNPIVDALGEAGR 352

Query: 61  -REALGMMERFTVLEQGPTISTYNSLIKG-----------KILKSMIGRGFTPTPTTYNY 120
            +EALGMMERF VLEQGPTISTYNSLIKG           KILK MIGRGFTPTPTTYNY
Sbjct: 353 FKEALGMMERFMVLEQGPTISTYNSLIKGYCKAGDLSGASKILKMMIGRGFTPTPTTYNY 412

Query: 121 FFRFFSKYGKIEED-------------------HLLLKMLCEEERLNIAIQVCNEMKAVG 180
           FFRFFSKYGKIEE                    HLLLKMLCEEERLN+A+QVCNEMKA G
Sbjct: 413 FFRFFSKYGKIEESMNLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARG 472

Query: 181 FDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGI------------------------ 204
           FD DLATSTML+HLLC MHKFEEAF EFEHMI +GI                        
Sbjct: 473 FDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEFLKRGLTKMAS 532

BLAST of CmUC05G098060 vs. ExPASy TrEMBL
Match: A0A6J1FQE9 (pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111446010 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 4.2e-77
Identity = 177/323 (54.80%), Postives = 188/323 (58.20%), Query Frame = 0

Query: 1   MKKNKISPTIVTYGTLVEGYCRMGS----------------------------------- 60
           MKKNKISPT+VTYGTLVEGYCRM                                     
Sbjct: 293 MKKNKISPTVVTYGTLVEGYCRMRRVEIAIELVDEMRGEGIEPNAIIYNPIVDALGESGR 352

Query: 61  -REALGMMERFTVLEQGPTISTYNSLIKG-----------KILKSMIGRGFTPTPTTYNY 120
            +EALGMMERFTVLEQGPTISTYNSLIKG           KILK M+ RGFTPTPTTYNY
Sbjct: 353 FKEALGMMERFTVLEQGPTISTYNSLIKGYCKAGDLSGASKILKLMMNRGFTPTPTTYNY 412

Query: 121 FFRFFSKYGKIEED-------------------HLLLKMLCEEERLNIAIQVCNEMKAVG 180
           FFRFFSKYGKIEE                    HLLLKMLCEEERLN+A+QVCNEMKA G
Sbjct: 413 FFRFFSKYGKIEEGMNLYNKMIESGYTPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARG 472

Query: 181 FDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGI------------------------ 205
           FD DLATSTML+HLLC MHKFEEAF EFEHMI +GI                        
Sbjct: 473 FDMDLATSTMLIHLLCKMHKFEEAFAEFEHMICRGIVPQYLTFCRLLDEFSKRGLTKMAL 532

BLAST of CmUC05G098060 vs. ExPASy TrEMBL
Match: A0A6J1J1S6 (pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111480484 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 3.5e-76
Identity = 175/323 (54.18%), Postives = 187/323 (57.89%), Query Frame = 0

Query: 1   MKKNKISPTIVTYGTLVEGYCRMGS----------------------------------- 60
           MKKNKISPT+VTYGTLVEGYCRM                                     
Sbjct: 293 MKKNKISPTVVTYGTLVEGYCRMRRVEIAIELVDEMRGEGIEPNAIIYNPIVDALGESGR 352

Query: 61  -REALGMMERFTVLEQGPTISTYNSLIKG-----------KILKSMIGRGFTPTPTTYNY 120
            +EALGMMERFTVLEQGPTISTYNSLIKG           KILK M+ RGFTPTPTTYNY
Sbjct: 353 FKEALGMMERFTVLEQGPTISTYNSLIKGYCKAGDLSGASKILKLMMNRGFTPTPTTYNY 412

Query: 121 FFRFFSKYGKIEED-------------------HLLLKMLCEEERLNIAIQVCNEMKAVG 180
           FFRFFSKYGKIEE                    HLLLKMLCEEERLN+A+QVCNEMKA G
Sbjct: 413 FFRFFSKYGKIEEGMNLYNKMIESGYTPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARG 472

Query: 181 FDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGI------------------------ 205
           F  DLATSTML+HLLC MHKFEEAF EFEHMI +G+                        
Sbjct: 473 FGMDLATSTMLIHLLCKMHKFEEAFAEFEHMICRGVVPQYLTFCRLLDEFSKRGLTKMAS 532

BLAST of CmUC05G098060 vs. TAIR 10
Match: AT5G11310.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-45
Identity = 117/319 (36.68%), Postives = 149/319 (46.71%), Query Frame = 0

Query: 1   MKKNKISPTIVTYGTLVEGYCRMGS----------------------------------- 60
           MK   + PT+VTYGTL+EGYCRM                                     
Sbjct: 276 MKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAGR 335

Query: 61  -REALGMMERFTVLEQGPTISTYNSLIK-----------GKILKSMIGRGFTPTPTTYNY 120
             EALGMMERF V E GPTI TYNSL+K            KILK M+ RG  PT TTYN+
Sbjct: 336 LSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYNH 395

Query: 121 FFRFFSKYGKIEED-------------------HLLLKMLCEEERLNIAIQVCNEMKAVG 180
           FF++FSK+ K EE                    HL+LKMLCE+ +L++A+QV  EMK  G
Sbjct: 396 FFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRG 455

Query: 181 FDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGI------------------------ 199
            D DL T+TML+HLLC +   EEAFEEF++ +R+GI                        
Sbjct: 456 IDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMSDMAK 515

BLAST of CmUC05G098060 vs. TAIR 10
Match: AT5G65560.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 9.4e-13
Identity = 49/186 (26.34%), Postives = 82/186 (44.09%), Query Frame = 0

Query: 1   MKKNKISPTIVTYGTLVEGYCRMGS-REALGMMERFTVLEQGPTISTYNSLIKG------ 60
           M ++K+ P I TY  +V GYC++G+  EA   + +       P   TY SLI G      
Sbjct: 209 MLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKD 268

Query: 61  -----KILKSMIGRGFTPTPTTYNYFF----------RFFSKYGKIEEDH---------L 120
                K+   M  +G       Y +                 + K+++D          +
Sbjct: 269 LDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTV 328

Query: 121 LLKMLCEEERLNIAIQVCNEMKAVGFDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQG 156
           L+K LC  ER + A+ +  EM+  G   ++ T T+L+  LC+  KFE+A E    M+ +G
Sbjct: 329 LIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKG 388

BLAST of CmUC05G098060 vs. TAIR 10
Match: AT1G12775.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-12
Identity = 50/181 (27.62%), Postives = 82/181 (45.30%), Query Frame = 0

Query: 1   MKKNKISPTIVTYGTLVEGYCRMGSRE-ALGMMERFTVLEQGPTISTYNSLIKG------ 60
           M++  I    V Y  +++G C+ GS + A  +     +      I TYN+LI G      
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR 313

Query: 61  -----KILKSMIGRGFTPTPTTYNYFFRFFSKYGKIEE-DHLLLKML------------- 120
                K+L+ MI R  +P   T++     F K GK+ E D LL +M+             
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNS 373

Query: 121 -----CEEERLNIAIQVCNEMKAVGFDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQG 151
                C+E RL  AIQ+ + M + G D D+ T  +L++  C  ++ ++  E F  M  +G
Sbjct: 374 LIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRG 433

BLAST of CmUC05G098060 vs. TAIR 10
Match: AT1G09900.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-12
Identity = 42/167 (25.15%), Postives = 81/167 (48.50%), Query Frame = 0

Query: 1   MKKNKISPTIVTYGTLVEGYCRMGS-REALGMMERFTVLEQGPTISTYNSLIKG------ 60
           + +  +SP +VTY T++   C  G  ++A+ +++R    +  P + TY  LI+       
Sbjct: 195 LDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSG 254

Query: 61  -----KILKSMIGRGFTPTPTTYNYFFRFFSKYGKIEEDHLLLKMLCEEERLNIAIQVCN 120
                K+L  M  RG TP   TYN                +L+  +C+E RL+ AI+  N
Sbjct: 255 VGHAMKLLDEMRDRGCTPDVVTYN----------------VLVNGICKEGRLDEAIKFLN 314

Query: 121 EMKAVGFDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGIKTSII 156
           +M + G   ++ T  +++  +C+  ++ +A +    M+R+G   S++
Sbjct: 315 DMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

BLAST of CmUC05G098060 vs. TAIR 10
Match: AT1G12700.1 (ATP binding;nucleic acid binding;helicases )

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-11
Identity = 49/192 (25.52%), Postives = 87/192 (45.31%), Query Frame = 0

Query: 6   ISPTIVTYGTLVEGYCRMGS-REALGMMERFTVLEQGPTISTYNSLIKG----------- 65
           ISP I+TY TL++GYC      EA  M++     +  P I T+ SLIKG           
Sbjct: 329 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGM 388

Query: 66  KILKSMIGRGFTPTPTTYNYFFRFFSKYGKIE---------EDH----------LLLKML 125
           K+ +++  RG      TY+   + F + GKI+           H          +LL  L
Sbjct: 389 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 448

Query: 126 CEEERLNIAIQVCNEMKAVGFDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGIKTSI 167
           C+  +L  A+++  +++    D  +   T ++  +C   K E+A+  F  +  +G+K ++
Sbjct: 449 CDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNV 508

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6608175.18.3e-8050.26Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_004136469.11.6e-7855.11pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Cucumis sa... [more]
XP_008466375.11.3e-7754.97PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial ... [more]
KAA0038793.11.3e-7754.97pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK31414... [more]
XP_022940385.18.6e-7754.80pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Cucurbita ... [more]
Match NameE-valueIdentityDescription
Q9LFM62.6e-4436.68Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidop... [more]
Q9LSL91.3e-1126.34Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana OX... [more]
Q9LPX22.3e-1127.62Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidop... [more]
Q3EDF85.0e-1125.15Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana OX... [more]
P0C7Q71.9e-1025.52Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS... [more]
Match NameE-valueIdentityDescription
A0A0A0LEE07.6e-7955.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878910 PE=4 SV=1[more]
A0A5D3E6166.4e-7854.97Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CR476.4e-7854.97pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Cucumis ... [more]
A0A6J1FQE94.2e-7754.80pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Cucurbit... [more]
A0A6J1J1S63.5e-7654.18pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Cucurbit... [more]
Match NameE-valueIdentityDescription
AT5G11310.11.9e-4536.68Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G65560.19.4e-1326.34Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G12775.11.6e-1227.62Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G09900.13.6e-1225.15Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT1G12700.11.4e-1125.52ATP binding;nucleic acid binding;helicases [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 6..24
e-value: 1.3E-5
score: 24.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 122..150
e-value: 0.47
score: 10.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 118..152
score: 9.711769
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..54
e-value: 2.8E-7
score: 32.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 55..204
e-value: 3.4E-14
score: 54.9
NoneNo IPR availablePANTHERPTHR45613PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 26..150
NoneNo IPR availablePANTHERPTHR45613PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 151..199
NoneNo IPR availablePANTHERPTHR45613:SF386LEAF PROTEIN-LIKEcoord: 151..199
NoneNo IPR availablePANTHERPTHR45613:SF386LEAF PROTEIN-LIKEcoord: 26..150

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC05G098060.1CmUC05G098060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding