CmUC05G097540 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC05G097540
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	DNA ligase
Location	CmU531Chr05: 27112254 .. 27112607 (-)
RNA-Seq Expression	CmUC05G097540
Synteny	CmUC05G097540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTGAACGAGTACAGTCCATTTTCATTCACTCACAAGCTCAAATCCTCAATCCGTTGTTTCCGCCCCGATCATGGCGATTTGGACGAAACCGAAGACGATTCTTCTCCAACAACTCCTAGATCGCCTCTCAAATCAATGGCGTCAGAGCTCCCGGAGCTCCGGGAAATGTGCCGGAATCTTGTCGCTCGGTTCAGCCGGAGTCGCCGACGGTATCATCACTCCGCCGATTTCCGATACGATCCTTCTAGTTATGCCCTTAATTTCGAGGACGAACAGATTCGTGACGATGATGAGTTTCCGATTAGGGATTTCACTTCGAGATTACCGGCGTCGCCGCCAGCGAAATGA

mRNA sequence

ATGATGTTGAACGAGTACAGTCCATTTTCATTCACTCACAAGCTCAAATCCTCAATCCGTTGTTTCCGCCCCGATCATGGCGATTTGGACGAAACCGAAGACGATTCTTCTCCAACAACTCCTAGATCGCCTCTCAAATCAATGGCGTCAGAGCTCCCGGAGCTCCGGGAAATGTGCCGGAATCTTGTCGCTCGGTTCAGCCGGAGTCGCCGACGGTATCATCACTCCGCCGATTTCCGATACGATCCTTCTAGTTATGCCCTTAATTTCGAGGACGAACAGATTCGTGACGATGATGAGTTTCCGATTAGGGATTTCACTTCGAGATTACCGGCGTCGCCGCCAGCGAAATGA

Coding sequence (CDS)

ATGATGTTGAACGAGTACAGTCCATTTTCATTCACTCACAAGCTCAAATCCTCAATCCGTTGTTTCCGCCCCGATCATGGCGATTTGGACGAAACCGAAGACGATTCTTCTCCAACAACTCCTAGATCGCCTCTCAAATCAATGGCGTCAGAGCTCCCGGAGCTCCGGGAAATGTGCCGGAATCTTGTCGCTCGGTTCAGCCGGAGTCGCCGACGGTATCATCACTCCGCCGATTTCCGATACGATCCTTCTAGTTATGCCCTTAATTTCGAGGACGAACAGATTCGTGACGATGATGAGTTTCCGATTAGGGATTTCACTTCGAGATTACCGGCGTCGCCGCCAGCGAAATGA

Protein sequence

MMLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPPAK

Homology

[Close]

BLAST of CmUC05G097540 vs. NCBI nr
Match: XP_022981208.1 (uncharacterized protein LOC111480417 [Cucurbita maxima])

HSP 1 Score: 201.4 bits (511), Expect = 4.2e-48
Identity = 98/115 (85.22%), Postives = 102/115 (88.70%), Query Frame = 0


Query: 1   MMLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCR 60
           MMLNEY PFSFT KLKSSIRCFR DH D  E+EDDSSP TPRSPLKSMA+E PE+R MCR
Sbjct: 1   MMLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCR 60

Query: 61  NLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPP 116
           NLVAR  R RRRYHHSADFRYDPSSYALNFEDEQ+RDDDEFPIRDF SRLPASPP
Sbjct: 61  NLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPP 115

[Close]

BLAST of CmUC05G097540 vs. NCBI nr
Match: XP_023523424.1 (uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-47
Identity = 98/114 (85.96%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 2   MLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRN 61
           MLN+Y PFSFT KLKSSI CFR DHGD  E EDDSSP TPRSPLKSMA+E PELR MCRN
Sbjct: 1   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEDDSSPRTPRSPLKSMAAEFPELRGMCRN 60

Query: 62  LVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPP 116
           LVAR  RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDEFPIRDF SRLPASPP
Sbjct: 61  LVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPP 114

[Close]

BLAST of CmUC05G097540 vs. NCBI nr
Match: XP_022940408.1 (uncharacterized protein LOC111446022 [Cucurbita moschata] >KAG6608139.1 hypothetical protein SDJN03_01481, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199.1 bits (505), Expect = 2.1e-47
Identity = 98/115 (85.22%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MMLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCR 60
           MMLN+Y PFSFT KLKSSI CFR DHGD  E E DSSP TPRSPLKSMA+E PELR MCR
Sbjct: 1   MMLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCR 60

Query: 61  NLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPP 116
           NLVAR  RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDEFPIRDF SRLPASPP
Sbjct: 61  NLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPP 115

[Close]

BLAST of CmUC05G097540 vs. NCBI nr
Match: KAG7031776.1 (hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197.2 bits (500), Expect = 7.8e-47
Identity = 97/114 (85.09%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 2   MLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRN 61
           MLN+Y PFSFT KLKSSI CFR DHGD  E E DSSP TPRSPLKSMA+E PELR MCRN
Sbjct: 1   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRN 60

Query: 62  LVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPP 116
           LVAR  RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDEFPIRDF SRLPASPP
Sbjct: 61  LVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPP 114

[Close]

BLAST of CmUC05G097540 vs. NCBI nr
Match: XP_022138148.1 (uncharacterized protein LOC111009386 [Momordica charantia])

HSP 1 Score: 176.0 bits (445), Expect = 1.9e-40
Identity = 91/116 (78.45%), Postives = 97/116 (83.62%), Query Frame = 0


Query: 1   MMLNEY--SPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREM 60
           M+ NEY  SPFSFTHKLKSSI CFR DHGDL + ED++S  +PRSPLKS ASE  ELR M
Sbjct: 1   MLNNEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGM 60

Query: 61  CRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASP 115
           CRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDE  R DD+FPIRDF SRLPASP
Sbjct: 61  CRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP 116

[Close]

BLAST of CmUC05G097540 vs. ExPASy TrEMBL
Match: A0A6J1J1H3 (uncharacterized protein LOC111480417 OS=Cucurbita maxima OX=3661 GN=LOC111480417 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.0e-48
Identity = 98/115 (85.22%), Postives = 102/115 (88.70%), Query Frame = 0


Query: 1   MMLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCR 60
           MMLNEY PFSFT KLKSSIRCFR DH D  E+EDDSSP TPRSPLKSMA+E PE+R MCR
Sbjct: 1   MMLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCR 60

Query: 61  NLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPP 116
           NLVAR  R RRRYHHSADFRYDPSSYALNFEDEQ+RDDDEFPIRDF SRLPASPP
Sbjct: 61  NLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPP 115

[Close]

BLAST of CmUC05G097540 vs. ExPASy TrEMBL
Match: A0A6J1FP70 (uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC111446022 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.0e-47
Identity = 98/115 (85.22%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MMLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCR 60
           MMLN+Y PFSFT KLKSSI CFR DHGD  E E DSSP TPRSPLKSMA+E PELR MCR
Sbjct: 1   MMLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCR 60

Query: 61  NLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPP 116
           NLVAR  RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDEFPIRDF SRLPASPP
Sbjct: 61  NLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPP 115

[Close]

BLAST of CmUC05G097540 vs. ExPASy TrEMBL
Match: A0A6J1CC83 (uncharacterized protein LOC111009386 OS=Momordica charantia OX=3673 GN=LOC111009386 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 9.1e-41
Identity = 91/116 (78.45%), Postives = 97/116 (83.62%), Query Frame = 0


Query: 1   MMLNEY--SPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREM 60
           M+ NEY  SPFSFTHKLKSSI CFR DHGDL + ED++S  +PRSPLKS ASE  ELR M
Sbjct: 1   MLNNEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGM 60

Query: 61  CRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASP 115
           CRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDE  R DD+FPIRDF SRLPASP
Sbjct: 61  CRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP 116

[Close]

BLAST of CmUC05G097540 vs. ExPASy TrEMBL
Match: A0A0A0L4E2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652740 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 9.4e-38
Identity = 88/115 (76.52%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 2   MLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRN 61
           M N Y+PFSFTHKLKS I CFRPDH D +  ++ SSPT+P   LKSM S+LPELR MCR+
Sbjct: 1   MFNHYNPFSFTHKLKSPISCFRPDH-DPELHDNPSSPTSP--ALKSMTSDLPELRGMCRS 60

Query: 62  LVARFS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPP 116
           LVAR S  SRRRYHHS DFRYDPSSYALNFEDEQ+R DDEFPIRDFTSRLPASPP
Sbjct: 61  LVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPASPP 112

[Close]

BLAST of CmUC05G097540 vs. ExPASy TrEMBL
Match: A0A5A7VBS3 (DNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00970 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.1e-37
Identity = 89/117 (76.07%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 2   MLNEYSPFSFTHKLKSSI-RCFRPDH-GDLDETEDDSSPTTPRSPLKSMASELPELREMC 61
           M N Y+PFSFTHKLKSSI  CFRPDH  +L E EDD+        LKSM S+LPELR MC
Sbjct: 1   MFNHYNPFSFTHKLKSSIPSCFRPDHDAELHENEDDN------PALKSMTSDLPELRGMC 60

Query: 62  RNLVARFS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPP 116
           R+LVAR S  SRRRYHHSADFRYDPSSYALNFEDEQ+RDD+EFPIRDFTSRLPASPP
Sbjct: 61  RSLVARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDFTSRLPASPP 111

[Close]

BLAST of CmUC05G097540 vs. TAIR 10
Match: AT5G11070.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-10
Identity = 44/96 (45.83%), Postives = 54/96 (56.25%), Query Frame = 0


Query: 40  TPRSP---LKSMASELPELREMCRNLVAR-----------FSRSRRRYHHS----ADFRY 99
           TPRSP   LKS A EL ELR+ CR + +R           ++     +HHS     DF Y
Sbjct: 48  TPRSPYEWLKSTAQEL-ELRDRCRRVKSRIKVTCRNNNCAYNNCVHHHHHSQSYPGDFSY 107

Query: 100 DPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPPAK 118
           DP SYALNFED  +R DD+    +FT+RLP SP  K
Sbjct: 108 DPLSYALNFED-NVRADDDGSFPNFTARLPQSPVTK 141

[Close]

BLAST of CmUC05G097540 vs. TAIR 10
Match: AT5G35090.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 50/134 (37.31%), Postives = 66/134 (49.25%), Query Frame = 0


Query: 10  SFTHKLKSSI---RCFR-PDHGDLDETEDD--SSPTTPRSPLKS-----MASELPEL--- 69
           S   KLKS      CFR  +H   D   DD  SSP T     +S     M ++ P L   
Sbjct: 10  SLQKKLKSRFCIAGCFRTTNHHHHDNIPDDLPSSPVTTEKSTQSPHGGGMKTKSPRLTRT 69

Query: 70  ----REMCRNLVARF--------SRSRRRYHHSADFRYDPSSYALNFEDEQIRDD-DEFP 117
                E C++L+ R            +    H+ADF YDPSSYALNF+     D+ D FP
Sbjct: 70  LSKSHEKCKSLIHRMGGGVGGVGGHGKHIRRHTADFHYDPSSYALNFDKGDEDDNIDRFP 129

[Close]

BLAST of CmUC05G097540 vs. TAIR 10
Match: AT3G48020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62865.1); Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 2.3e-04
Identity = 27/63 (42.86%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 60  RNLVARFSRSRRR---YHHSADFRYDPSSYALNFEDEQIRDDDEF---PIRDFTSRLPAS 117
           +  + RF+R  RR   +  S  FRYDP SY L+FEDE   DDDE     +R F+ R  + 
Sbjct: 59  KTFIRRFNRDPRRGQDWDDSDKFRYDPVSYTLSFEDEDKDDDDEAGVGGVRSFSMRYASV 118

The following BLAST results are available for this feature:

BLAST of CmUC05G097540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022981208.1	4.2e-48	85.22	uncharacterized protein LOC111480417 [Cucurbita maxima]	[more]
XP_023523424.1	1.2e-47	85.96	uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]	[more]
XP_022940408.1	2.1e-47	85.22	uncharacterized protein LOC111446022 [Cucurbita moschata] >KAG6608139.1 hypothet...	[more]
KAG7031776.1	7.8e-47	85.09	hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022138148.1	1.9e-40	78.45	uncharacterized protein LOC111009386 [Momordica charantia]	[more]

BLAST of CmUC05G097540 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC05G097540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J1H3	2.0e-48	85.22	uncharacterized protein LOC111480417 OS=Cucurbita maxima OX=3661 GN=LOC111480417...	[more]
A0A6J1FP70	1.0e-47	85.22	uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC1114460...	[more]
A0A6J1CC83	9.1e-41	78.45	uncharacterized protein LOC111009386 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A0A0L4E2	9.4e-38	76.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652740 PE=4 SV=1	[more]
A0A5A7VBS3	2.1e-37	76.07	DNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00970 PE=...	[more]

BLAST of CmUC05G097540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11070.1	2.8e-10	45.83	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]
AT5G35090.1	1.4e-09	37.31	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]
AT3G48020.1	2.3e-04	42.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..51
None	No IPR available	PANTHER	PTHR33168:SF61	SUBFAMILY NOT NAMED	coord: 11..115
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 11..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC05G097540.1	CmUC05G097540.1	mRNA