CmUC05G095920 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC05G095920
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	GRAS domain-containing protein
Location	CmU531Chr05: 24353656 .. 24354044 (-)
RNA-Seq Expression	CmUC05G095920
Synteny	CmUC05G095920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAATTTGATAACTTGGTAGCCACAGCAAGAGGTGTCGTGTCTATCGATGGAGATCCATTCCAGCGTCTTGGCGCTTACATGGTGGAAGGGTTGGTGGCGAGGAAAGAGGAATCGGGGGTGAATATATATCGGACTCTAAACTATAGAGAGCCTGCAAGTGATGATTAGTTATCTTTTATGCATATGGTATATGAAATCTGCCCCTATTTGAAGTTCGGTTACATGGCAGTGAATGGGGCAATTATCTAGGCCTATGGAAACGAAGACCGCATCCACATCATAGACTTCCAGATTACTCAGGGGACGTAGTGGTTAACTCTTCTTCAGGCACTTGCAGCAAGGCCAAGTGGGCCTCCCCATGTGAGGATAACCGGTATCATTGA

mRNA sequence

ATGAAGGAATTTGATAACTTGGTAGCCACAGCAAGAGGTGTCGTGTCTATCGATGGAGATCCATTCCAGCGTCTTGGCGCTTACATGGTGGAAGGGTTGGTGGCGAGGAAAGAGGAATCGGGGGTGAATATATATCGGACTCTAAACTATAGAGAGCCTGCAATTCGGTTACATGGCAGTGAATGGGGCAATTATCTAGGCCTATGGAAACGAAGACCGCATCCACATCATAGACTTCCAGATTACTCAGGGGACGTAGTGGTTAACTCTTCTTCAGGCACTTGCAGCAAGGCCAAGTGGGCCTCCCCATGTGAGGATAACCGGTATCATTGA

Coding sequence (CDS)

ATGAAGGAATTTGATAACTTGGTAGCCACAGCAAGAGGTGTCGTGTCTATCGATGGAGATCCATTCCAGCGTCTTGGCGCTTACATGGTGGAAGGGTTGGTGGCGAGGAAAGAGGAATCGGGGGTGAATATATATCGGACTCTAAACTATAGAGAGCCTGCAATTCGGTTACATGGCAGTGAATGGGGCAATTATCTAGGCCTATGGAAACGAAGACCGCATCCACATCATAGACTTCCAGATTACTCAGGGGACGTAGTGGTTAACTCTTCTTCAGGCACTTGCAGCAAGGCCAAGTGGGCCTCCCCATGTGAGGATAACCGGTATCATTGA

Protein sequence

MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPAIRLHGSEWGNYLGLWKRRPHPHHRLPDYSGDVVVNSSSGTCSKAKWASPCEDNRYH

Homology

[Close]

BLAST of CmUC05G095920 vs. NCBI nr
Match: TYK25996.1 (scarecrow-like protein 21 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA 55
           MK+FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Sbjct: 240 MKDFDNLVATARGAVSIGGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA 293

[Close]

BLAST of CmUC05G095920 vs. NCBI nr
Match: XP_008454576.1 (PREDICTED: scarecrow-like protein 21 [Cucumis melo] >KAA0063490.1 scarecrow-like protein 21 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA 55
           MK+FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Sbjct: 240 MKDFDNLVATARGAVSIGGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA 293

[Close]

BLAST of CmUC05G095920 vs. NCBI nr
Match: XP_004151967.1 (scarecrow-like protein 21 [Cucumis sativus] >KGN57951.1 hypothetical protein Csa_010100 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA 55
           MK+FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Sbjct: 240 MKDFDNLVATARGAVSIGGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA 293

[Close]

BLAST of CmUC05G095920 vs. NCBI nr
Match: XP_038899119.1 (scarecrow-like protein 21 [Benincasa hispida])

HSP 1 Score: 94.4 bits (233), Expect = 6.7e-16
Identity = 45/54 (83.33%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA 55
           M +FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Sbjct: 238 MMDFDNLVATARGAVSIGGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA 291

[Close]

BLAST of CmUC05G095920 vs. NCBI nr
Match: XP_022940516.1 (scarecrow-like protein 21 [Cucurbita moschata])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA 55
           M++FDNLVA ARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Sbjct: 228 MEDFDNLVAIARGAVSISGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA 281

[Close]

BLAST of CmUC05G095920 vs. ExPASy Swiss-Prot
Match: Q69VG1 (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-12
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 2   KEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           +EF  LV  ARGVVSI+G+P QRLGAY++EGLVAR   SG NIYR L  REP
Sbjct: 218 EEFHKLVQEARGVVSINGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREP 269

[Close]

BLAST of CmUC05G095920 vs. ExPASy Swiss-Prot
Match: Q8GVE1 (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.3e-09
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 5   DNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           D ++   R +VS+ G+P +RLGAYMVEGLVAR   SG++IY+ L  +EP
Sbjct: 194 DMMIPELRKIVSVSGEPLERLGAYMVEGLVARLASSGISIYKALKCKEP 242

[Close]

BLAST of CmUC05G095920 vs. ExPASy Swiss-Prot
Match: Q9S7H5 (Scarecrow-like protein 21 OS=Arabidopsis thaliana OX=3702 GN=SCL21 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-08
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 12  RGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           RG+VSI G+P QRLGAYM+EGLVAR   SG +IY++L  REP
Sbjct: 77  RGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKSLQSREP 118

[Close]

BLAST of CmUC05G095920 vs. ExPASy Swiss-Prot
Match: Q9SDQ3 (Scarecrow-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=SCL1 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           ++E  ++V   R +VSI GDP QR+ AYMVEGL AR   SG  IYR L  +EP
Sbjct: 238 LEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEP 290

[Close]

BLAST of CmUC05G095920 vs. ExPASy Swiss-Prot
Match: Q8H125 (Scarecrow-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SCL5 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-07
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 5   DNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           D L++  + +VS+ G+P QRLGAYM+EGLVAR   SG +IY+ L  ++P
Sbjct: 247 DWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDP 295

[Close]

BLAST of CmUC05G095920 vs. ExPASy TrEMBL
Match: A0A5A7V8I4 (Scarecrow-like protein 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold977G00810 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.6e-17
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA 55
           MK+FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Sbjct: 240 MKDFDNLVATARGAVSIGGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA 293

[Close]

BLAST of CmUC05G095920 vs. ExPASy TrEMBL
Match: A0A5D3DQQ1 (Scarecrow-like protein 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold668G00110 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.6e-17
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA 55
           MK+FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Sbjct: 240 MKDFDNLVATARGAVSIGGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA 293

[Close]

BLAST of CmUC05G095920 vs. ExPASy TrEMBL
Match: A0A0A0LD17 (GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G405510 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.6e-17
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA 55
           MK+FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Sbjct: 240 MKDFDNLVATARGAVSIGGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA 293

[Close]

BLAST of CmUC05G095920 vs. ExPASy TrEMBL
Match: A0A1S3BYH5 (scarecrow-like protein 21 OS=Cucumis melo OX=3656 GN=LOC103494964 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.6e-17
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA 55
           MK+FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Sbjct: 240 MKDFDNLVATARGAVSIGGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA 293

[Close]

BLAST of CmUC05G095920 vs. ExPASy TrEMBL
Match: A0A6J1IWJ4 (scarecrow-like protein 21 OS=Cucurbita maxima OX=3661 GN=LOC111480553 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.3e-16
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA 55
           M++FDNLVA ARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Sbjct: 225 MEDFDNLVAIARGAVSISGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA 278

[Close]

BLAST of CmUC05G095920 vs. TAIR 10
Match: AT2G04890.1 (SCARECROW-like 21 )

HSP 1 Score: 60.8 bits (146), Expect = 7.7e-10
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 12  RGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           RG+VSI G+P QRLGAYM+EGLVAR   SG +IY++L  REP
Sbjct: 77  RGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKSLQSREP 118

[Close]

BLAST of CmUC05G095920 vs. TAIR 10
Match: AT1G21450.1 (SCARECROW-like 1 )

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-08
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           ++E  ++V   R +VSI GDP QR+ AYMVEGL AR   SG  IYR L  +EP
Sbjct: 238 LEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEP 290

[Close]

BLAST of CmUC05G095920 vs. TAIR 10
Match: AT1G50600.1 (scarecrow-like 5 )

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-08
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 5   DNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           D L++  + +VS+ G+P QRLGAYM+EGLVAR   SG +IY+ L  ++P
Sbjct: 247 DWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDP 295

[Close]

BLAST of CmUC05G095920 vs. TAIR 10
Match: AT4G17230.1 (SCARECROW-like 13 )

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-07
Identity = 25/43 (58.14%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 14  VVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPAIR 57
           +VS+ G P QRLG YM EGL AR E SG NIY++L   EP  R
Sbjct: 184 MVSVSGSPIQRLGTYMAEGLRARLEGSGSNIYKSLKCNEPTGR 226

[Close]

BLAST of CmUC05G095920 vs. TAIR 10
Match: AT5G48150.1 (GRAS family transcription factor )

HSP 1 Score: 52.0 bits (123), Expect = 3.6e-07
Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 6   NLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLN 50
           +++   R +VS+ G+P QRLGAY++EGLVA+   SG +IY+ LN
Sbjct: 140 SMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKALN 183

The following BLAST results are available for this feature:

BLAST of CmUC05G095920 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK25996.1	1.4e-16	85.19	scarecrow-like protein 21 [Cucumis melo var. makuwa]	[more]
XP_008454576.1	1.4e-16	85.19	PREDICTED: scarecrow-like protein 21 [Cucumis melo] >KAA0063490.1 scarecrow-like...	[more]
XP_004151967.1	1.4e-16	85.19	scarecrow-like protein 21 [Cucumis sativus] >KGN57951.1 hypothetical protein Csa...	[more]
XP_038899119.1	6.7e-16	83.33	scarecrow-like protein 21 [Benincasa hispida]	[more]
XP_022940516.1	1.5e-15	81.48	scarecrow-like protein 21 [Cucurbita moschata]	[more]

BLAST of CmUC05G095920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q69VG1	1.2e-12	67.31	Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonic...	[more]
Q8GVE1	6.3e-09	53.06	Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonic...	[more]
Q9S7H5	1.1e-08	66.67	Scarecrow-like protein 21 OS=Arabidopsis thaliana OX=3702 GN=SCL21 PE=1 SV=1	[more]
Q9SDQ3	1.6e-07	52.83	Scarecrow-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=SCL1 PE=2 SV=1	[more]
Q8H125	2.0e-07	51.02	Scarecrow-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SCL5 PE=1 SV=1	[more]

BLAST of CmUC05G095920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8I4	6.6e-17	85.19	Scarecrow-like protein 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5D3DQQ1	6.6e-17	85.19	Scarecrow-like protein 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0LD17	6.6e-17	85.19	GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G405510 PE=3 S...	[more]
A0A1S3BYH5	6.6e-17	85.19	scarecrow-like protein 21 OS=Cucumis melo OX=3656 GN=LOC103494964 PE=3 SV=1	[more]
A0A6J1IWJ4	7.3e-16	81.48	scarecrow-like protein 21 OS=Cucurbita maxima OX=3661 GN=LOC111480553 PE=3 SV=1	[more]

BLAST of CmUC05G095920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04890.1	7.7e-10	66.67	SCARECROW-like 21	[more]
AT1G21450.1	1.1e-08	52.83	SCARECROW-like 1	[more]
AT1G50600.1	1.4e-08	51.02	scarecrow-like 5	[more]
AT4G17230.1	1.6e-07	58.14	SCARECROW-like 13	[more]
AT5G48150.1	3.6e-07	50.00	GRAS family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..110
None	No IPR available	PANTHER	PTHR31636:SF151	CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 1	coord: 1..54
IPR005202	Transcription factor GRAS	PANTHER	PTHR31636	OSJNBA0084A10.13 PROTEIN-RELATED	coord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC05G095920.1	CmUC05G095920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding