CmUC05G095240 (gene) Watermelon (USVL531) v1

Overview
NameCmUC05G095240
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRetrotransposon gag protein
LocationCmU531Chr05: 21402648 .. 21413895 (+)
RNA-Seq ExpressionCmUC05G095240
SyntenyCmUC05G095240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTGAGCCTCACCAACAGGGGAACAAAAGATTTCCTAATCAGACATCCAGTTGAAAACTACTTCGTTCTTAAAGAGTTGGTCCTAAGGTTAGCTCGTGAAAAGAAGATTGAGTTAGATCTGGATACAATAGCTTAGACAAATCACGTTGTAGTGATGATGACTTCAAGTGTTCTGAAACTAAAAATATTTTATGACCAAAAAGAAAGCTTGGTCCAATTTGGGACCTTCAAGCCATAGTTGTTCGGTTCCAACATGAGATTCCAACGACAGACTCCAAAGAAAAAGATAAGCCTATTGAAGATGACGATGAGGGGTGGATCCTTGTGACTCGTCAAAAGAGAGGAAAGTAAAGTTTCATCCAAAAGGAGTTGCGCTTCCGTGGGAATTACAAAAGAGAAAACAATACTCATAAAAAGAAAGGAAAAAAAAAGGCATGGAAGCCTAAGCTTGTTGAGAAAGAAGACAAGGATCTCCCTCAACCTAGACGACAAGTAATATTAGCAGAGTTCCTCCCAAGAAACCTAGAACAACTACTTGAAGATAGCACTAGAATTTGTTACATGTCATGTTGTTACCACAACAAAGAGTGAAGATACTCTTTCAAGTTCGTTGAAGACGATAGTAGAATCAAAAGACTTATCATTGTTTAACATAGATGACTTATTGTCACTCCCTCAAGCAGCTAAGAGTGTCCTTATTGATGCATTGTTAGACTCCCCTGCATCAAGTTCACCTAGCCTTTATGGCATGCTCATGTGCCTCTTGTTGCACATACATAGGCTTGGATATAAGTCCCTGAGCCAGTTCGAATAACTAGGAAGGTGATGTGCGAAATCCACAATTGCACTGGTCAAGTTATAGTATAAAACGGTCAAGACCGAGTATCATATCAACTGGGAACTGAATTCAATAGATTCACCTATCTATTCAAGAATTGAATTGATTTTATCTAAGGAATTGAAACCAAGTTTGGGTTTTGTATTTTGAAAACAAGAAAAGAAAGTAAAAGCAAGTGAAACTTCAAGGGATAAGAGTGTTATAGTGTGTTGATTTCATTAATTAGTTCATTAAGTCATGTTTTAGGTTTAAATGGAATTATGTGCAAACAATATGTTTAAGTCTAGAAACTAAAGTCTAGTTATTTTCTTTAAAAAACAACCATTTCTTATGCAACTTAATTGATTACTAATTTTTTGAAACCAAATTAAGAGACATACATAATCATCTTTCTCTAATTACCTAGTTATTTTCATGAAAGATTAGTAGAGATTCAATGTCATAGATCAAATTAGACATACAATCACTCAATCATACATCTAACTTAACAAGTATTAAGGACCTCCCAATTTATAGAATTTCACAAATTTGTAGCCCAATTTCTTTCCTAAAATTCGGAATTTGTAATTTTAGAAAGACTGATGCCTAGGCGCTCTACCCTTGAATTCGAACGCCCATTGAAGCGCTAGGCAGCGCCTGGGCGCTCACTGCCCAAAGCCTAGGCGCTCCATAGATCCTAAAAAGTATAGCTCCTAGGTCTACAACACCGGGGCAGTGCCTAGGCGCTGCCCTACATTAGGGTTTTTCCATATTTTCTTCACTTTTTCACTCAGTTTTGACTCAGTTTAGTTCTTTTGACTTCTAAAACTTATTTTCTTCATTATTACCTAAAAACCACAAGCAAACACATGAAATCTAACAAAAAAAAAACTCTAAATTAAGAGCAATAAAAGCCTTTTTTGAGTGCTTTTTAGAAGGGCAAGATAAAAGTTGTCGACAACAATCATATAACTACTGGAGAAGTCGACGATTCAAAAGAAATTGAGCAAAGAACTTCTGTCTTCGATCATATCAAGCTTTCAGATACTCAATCAAGTCTTCCAAAGATTGGGTATGACCAAGACAAAAGAAGAAGATCAATATTTAGCAACCACAGCTCCACCCAAACTCCAGCCTTTAAAAGGCTAAGTATCCACAAATCGAAAAAAGAACGACCTTCAATATCTGGTTTTGAACGTCTCAAAATGACAAGCGATCAACGTGAAAGAAAGATGAAAACCTTAAAGGCAAAGCCATTTGTGAAGTAAATAAAAACGAGAAGATTCTTAGTCTTGTTTCTTCACGAAAGATTAGGAAGCTTTCTGTTGACATAAATACAAAATGTTCCTTGATGGTGAAACCAAAGCTCATTGTATTGACCCATGTTTGGGGTGAGAATATGAGTTGAGACATGAACTTAACTCATTGTTTAGGGAGCCAATATTGCATGTCACCAATTTTTATATTCATGTCCACCAACAATGTTTAAATGAAAAGAGTTACCAAATACATGAATATTTTTATAAAAAATGTTTAAATAAAAATGACTTTTGGAAAAATATTTTTTTCTAATTTAATCCAAATAGCTTGTATAATGGCAAAAAGATAAGTATTAATTGAAGTTTGGTAGGAGGAAGGAAGTTGTTGAACATGTCTATCAGATAGAAGATTTGGATGAACGTTTATGTAAATTCCTTTTTTATGTAAGTAGACTGGCTATTTGTTGGCCCATATCATATATAATTTTTTTTGTATCATATAATTGAGCTGGAGAATGTGGTCTTTGTTATATATTTTTTGTGTCAACCATGTAACGTAACAATTAATAGGGTCATTATAGTACAATTACATTTTGAAGATATTCCGCTAACAATATAAATCCAAATTTGTTTTGTTCCAAGAAATCAAATATAATTTTGTCCAACTTAACTAGGAAAATTACATGCACAAATTTGTAAAATGATTGCTTAAATGCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAATAATCCTGATCCAAAAGTAAACTAAACCCCATTTCCCAAAACTCTTAATATTACATATGTACTTTAAAATAAAATAAAACAAAGTGCAATCCAGAGTTTATTTAAAAGAAATATATATGTAGAATTATTGAATAAAAATGTTTCCAAATAAAAATAATCACCATAAAATAGATTATTTATGTCAGAAAAAACCGCACCAGATATCTTTGACATATGAACCCAACTCAGCACCCAAAACACCCAAAACACCCAAAACACAGACATATAAACTTTACAGACATATGAACTCAATTCAACACCCCAAACAACCTAGATTTGGAGGGTGTAACTGGGCACCCGGACTATACTAAAATGATATGCAAATAAAAGACAAAGAGTTTGAGGTTTTTTTTATGTATATGGAAGGTATTAACATTCCATGTTCAAAGAATGAAAATTTACTTTTCTTCAGTTACTAAGGAATGGTCTTTTTTAAGTTAAATATTATTTTGATGTTTAAATGTTACAGGCTTTATTGGTCACTATTAATATAAATAATAAACAATACTTATGAGTCAACATTAGGTCATCGAATTATAGACAACCAAAAAGTTCGTTGGGGACGATGTGCTAAAGATTTATGGAGGATTCCTCTATGTTCCCTATTATTGAGAATGGTTGGAGATCACTGTTGCTTGAAATACGACGATACTTAAGAGGAAGCAACAAAGTCATCTGACTTGGAGATGGAAAAGTTGCAGTAAAACCAATGAATTTAGAGATGGAGAAGATGTGGCGAAGCCATCGAATTTAAAGATGGAGAAGCATCGACAGAGAAACCATCAGACTTAGAGATGGAAAAGCAGCGGCGATGCCATCGAACTTGGAGATGAAAAGGTTGCAGAGGAACCATTTGAAGGGAATTGAGTCCAGACAGAAGCATGTGATCGTGTTATTGATTTCTTGAAGAATTAAAAAAAACAAAAACTAGAAGAAAAGGTTAAGCATCATACATTTGCCATGATACGTGAGCATAATGAAATCTCCTCTTCAATCTTGTTGTCTCCTTCTTGGATTCTTCTTATTCCACGAGATCTTCCTTGCTATGACTCTAGCAAGGATCCGGCTTTATGGGCCTAGGCTTGGTTGATCCATGGACCTGACCTTTGGGCTCAACTAATTGGATTTGGGCCTTAATTGTCTTTTAGGCCAAATTAAGCCTACTTTTGGGCTCAATTGGATTTTAAACTAAAAATTAATACCAAATTGAACCAAATCATTTTATTTGATCCAATGGTCATGATAAAAACACGTGGCATTATCGAATTTGTCAACTTTTGTCTTCAATTTCAATTTGGGACACATGTCGACTTCTAATTTGTATCAAATGTGATCATTTGTAATTTTGTCATTAATTTGAGAAATGACATGGCATTTTGTATTTGGTCCAAAATTTTTTCATTCAACTAGTTACAGTTTCTAATTATTATCCTCTGATTCTTTCTCTTGGATGCATAAACTTTAATCCTCAAGCTTGTTGATCTTCTTGGATGATCTTCTTAGAGGATCGACCTTTGGACTTGTTAGTCAGTTTGGATTAGCTAATGACTCGTTGATCAATTTGGATCGACCTTTGACTTATTGATTGGTTTGGATCGGCCTCTGGCTTATTGATCAGTTTGGATCGGCCTCTAGCTTGTTGATCTGTTTGGATCGACCTCTGACTTATTGATCAGTTTGGATCGACCTTTGTCTTGTTGATCAGCTTTGATAAGCTTTTGAATTATTGATCTGTCTGGATCAATCTTTAACTTGTCCACCTCTGCCTTGTTGATCAGTTTAGACGACCTTTACCTTGTTGATTAGCTTAGATCGGCCTCTAGCTTGTTAATCGATTTGGATCGACCATTGGCTAGTTGATCAACTCAGATCGACCTCTGGCTTGTTGATATGTTTGGGTTGACATATGGCTTGTTGATCCGCTTAAATTAACCTTTGGCTTGTTGATCGACTTGGATCAACCTCTAGCTTATTGATCTGCCTGTGAGCTTTTTCTTGAATTTGAGGAGGTTGAATCTTCAACTTGTAGGTTGTAGAGACGATGAATTTGTTGAAATCTTCTAATTTTTTAATCATCTAAGTCTTGAATTGTTTGAATTTTGAATCATGGAATTTTGGCTCTTATCAACTTTGACTAAAGATTATAGCTTCTATTCATCTAAGTGAAGACTTAGTGTATGTTTGAATGTTAAATCCTCAATCTGGGTTGGCAGGTTGGCGAGTTTGTTCTTAAATCAGCAAAGAGACTATCAATTTGTTGAAATCTTCTAAATTCTGGCTTCTAAATGCTTCAAATGATAGATGACCTCCCTTATTTATAGAGTTTTGGGAGACTCTCTATGTACTTGGGCTTGGTTGACATAGGACCCAACTTTTGGGCTTAAACTTAATTTAATATTTTTTAGGGATATTCAGGTATATAGCAGTAATTATACTTTCATTTGGAAAAATAGCAAAACACAAAATTGTTTTGAATTATAGCAAAATGTCTCCCTTGCACGTGAGACATTTTTTTTTGTTAATCCTAAAATGCCCTCAACGATATCTTGTATTACACAGTAATTAAATTATCTTCCTATATTATAACCTACAAAATCTCCCTTATTTGATTGAATTTTGAGATAGGATCAGATCATTTCTTTTTTTAAATATAATATTAACAGATTTGGAAATCTTTTTTTTTTTTTTTTTTTTTTTTTAGATTTTTCACCTAAAATCTTGGGAAGCATGCGATAAACTCTCCCCCATTCTCATCTTCTTCTCTTTCTTCGTTAGTGATAAGCACTCAAAAAATGCTTTTTATCCTTAAATTGGGGATGGTTTTATTAGATTTAATGTGTTTGTTAGTGGTTTTCAGGTGATAACGAAGAAAATAAGGTTTAGAAGTCAAAGGAACTAAACTGAGCCAAAATCGAGCGAACGGAAGAGAAAGTGGAAAAACCCTAGAAATAAGGCAGCGCAACCGAGAGCGTCGTTGCACCGCCCCGCTGCGCCCTAGACTTGAGAGCATCAAATTTGAAATTCTACTGGAGCGTCGTTGCACTTGTCGAGAGCATCGCTCGCGGCGGTGATGCACTTGAAACCAACCTACAATGTCAGACAGTGTAGCGACATTGACCCTTTTATGTCGAACAGTGTCACTACGCTCCTGGCGCCAACTTTCCTTTTTTGAAGATTTTTCAATTTTGGAAAATATTTTGGGCGGGCACTTCTATATATTGAGGGTTTTCAGCAACCCTAGATGTGAAGGAACACACAAGAAAATACACAAGAGAGTCCCAAAGAAAGCACACAAAATTGAAGAGAAAAGAGAGCCCAAAAGGTGTGAGTTTGGTACAATCAAGTGGAAATCGAAGGAGCTCAACAACGAGAGGCAATTCGAGAGTTTTTCTTCCTAAGTTTCTCTTTCCCTTTTACTTTTATGTTTGAGAACTCATATGCAAATATGTATTTGATGGCTATGTGTGGCTAAACTTATTGTTTTAGGGTGTTGGATGATTTAATTATGGATTTATGTCAATGACTTAGTACTTTTCATAGATGTTGTTGAATGATATGTTTTTCAATGTTATTGTGCTTATTCTTTATTGTTTGATCATCAATAAGTCTTAGGTTAAATGTATGTTGAATGATTGTATGTCTAATTGGATCTATGGCATTGAAACTCTACTAATCTTTCATGGAAATAGATAGGTTATTAGAGAAAGTTGATCATGACTAATATTAATGTTATGCTTCTTAACTGGGTTCAAGATATTAGTAATCAATTATGTTGCATAATAAATGGTTGTTTTTTAGAGAAAGTAATTCAGATATTAGTTTCTAGACTTAAACATATTATTTGCACATAATTCCATGAAAACCTAAAGCATGACTTAATGAAATAATTCATGACATCAACACCCTAGAATATTCTTATCCTTTGAAGTTTTGCTTGCTCTTGTTTTCTTGTTTTTAAAATCTAAATTTGAGGCCATTCCTTAGATAAAATCAATTCAATTCTTGAATAGTTAAGTGAATGTATTAAATTCAATCCCTAGTGGATACGATACTCGGACTTAAACCGTTTTATATTATAACTTGCCCTGTACACTTGTGGAATTGCACATCAGTTAGTCCTCCAACCCCCTGCCTCTTCCATTGCACCATCGTCCGGCTCAAAACCTAGCCGCACGCTAGCATCGTTCATGATTGGATCCCACTCGAGTCGCCCAGCTGCTCGTCAATGCGTTCAGCTACTTGTCGTCGGTCGCACCGCCCAGCCAATCGTTTTTCGTCGGTTTGAACTGCATTTTGTCATCGGTTGTTTTGTTCGCCAGCCTCTATTGCCTCCTTATCGTTCCTTGTACTCCACTATAGGTAGATACTATTGCCCCCTCTCCTTTCTCTCTCATAATTGTCTCTCTCTTTCTTATCGTCTCTCTCGTTTAGTTAGTAACTCTCTTTTATCCCATTAGAAATTGTAAGATCACAATCAAATGGTGAATATTCAAATTCTAGTCATTGGCGGGACATACCACGATGGAGGCTTGACGAAGCGAAATAAAGATTGTTAATTTGAAATTGAAAGATGAAGAAGAAAGATAATTAAAGAATAATTATTTTTTTATTCTCAACAATTTCAATCCCTTCATTATCAACTATCCATGAAGTAGTCATTATTTGCTTATTTCTTTTGTTGTTGACCAATTTTTCTTCAACAACATTTTAAAATTACAATGTAATTAACTAATGAACATCACACAATTTTCAATCGGTCATATCAATTACAATGTAATACAATTTTAATAATACAAAAATTTTAAAGATATGCTTCAAAGTGATTTCTTCAACGGCATATTAAAGTTATAATGTAATTCTTTTAAAATCTTATTAAAAAAAACAACAATATGTTAAAATTACATATCTTCATCTAAAAATTGAATCTTGTTTTTTTGTTTTTTTTCCTTTAATCTCATATCTTCTTTATTTTCTTTACATTTTTTATCTCGTCTCGATTTTAAAATCTCATATCTTCCAATCTATGTCTCTACTCCATCTTCATGCCATTGTCTAACTGCTATTGATTGTCCAAGTTTCTTTTCCCCTTTCGTTTCCCTCTCATAACCATCCCATTCTCCAACTTTTGTATTAGATCTCACCTTTTCACCAACTTTTGTTGTGTTGCAGAGCTCACTTTTTCACCAACTTTTGTTGTGTTGCAGAGCTCAATCTCAAGCATGGTAGAGGAAAACAAGATCCCTAAGGTTTGCATTGTAATTAATTTTATTTTCTGCTAATCAATCTTAATTTGCAAGGGAGGGATTCTTCACTTTTGGAGTTCCAATGGAGCTTTTGTGTATTAATCTCGAAGAATAGGACAACCATTTATTTTAAATGTTTTGAGGTTAGATCGTATTTTTAGAAGGTTGAATCAAATCTTATTTTTTTTTAAATACAATATATTTTAAATACCAATAAAATCTAGGTTGTCATAATTTTTAAAAAATATGTATTTTTGGAATAAATTAATTGTAGATACTATTTGGGGTATTTTTGTAATCTAATAATTAGTAATTAATTAAGTTCAAATTTGTTTTGCTATTTTTGCTAACCTATATTTTTCCAAATGTAAATTTCAAAAATGCTATTTCTCTTGTTAGCCCTATTTTTTAATAAACTTTTATTTAAATTTGACCCAATTTGTTTTAATAAACCTGGGTAGATCTAATTTTGGGTCCAATCACCACATGACATAATTTGATTAGGCAAGCTACATTGCCCTCGATGAAGCAGTGCCTAGACATGTAATGTTGTTTGATTTGTCAAGTTTTATGTCATTAATTTTAATTTAAAGGCACATGTAAATTTGTAATTGGTCTCGAATCTATCAATTATTAATTTAAATTAATGTCTAGGTAATTTGTGATTGACCAAAATTTCTTAATTAACAAATACAAATTAAACTATAGATATACATAATCGAAAATGGTGAGAAGTTGCGATACAAATAGTACAAAAAAAAAATAAATAAATAAACTAATTTGCTATATAACATAAGATAAAAGCATGATAAAATAGGATTGACTTGGACATGCAACCACGTGCAATATGCGCTCCACAAACATGACCATGGCACCATGCACACATTATCCAACTAGTACAAAAGAAAAAAAGGAAAGGTAAAATGAGTAAAAAGAGGATGCTTTCAACATAAAAATCTTGAAAATCCATGCTTCAAATCCTTTGACATGTTATATTACCGCAAAACATATGCAATAATCTAGATGCTCATTCTTAATGTCTCAACTACAATAGAAGTGGGATGAATTTTCATTTCCTAACACTAGACTTCAAGGATTTGGCAATGATAAATAGTTCTGCAGCGAGTATTTTTAAATCAACAATGTAAAGCGTAGAGGTGAATATTCAAACTTCTAACATTTTAGTTAAAAAACAAAAATAAAATTAATTAATTAATAACCTTAATCATGTGAGATACACTGATTCACGATTCTAGAGAGTTAATTTTATCCCATTATCTCATCGAGACAAACTCTATATTCATTTTGAACAACAAAAAGCAATTAATCAAGTACGACAACAAAATTTCCAACAAGCCTTACAATAATTTGTAGCATTTTTACCATAACGGCGAGTCACCAGGCCGAATCAAGCAGCGGGGCAGCATTGAGATAAGCCATCACCACATATTGCTACCAAATAGGCTGTTGTCATTTTTCAATTCTCAAAGGCTCCAACACTTGAAAAGGTTCTTCTACTGCTGGGGGCAATTTGCATCAGCATTATAGGGCCCTGTTTTGCTCAGGCAGGCTCGGCCAACAAGCATTCTCAACCGCTCTGATTGCTCCAATTTACCCTTTAAAATCACTTTTCCGCAGAAGGTACTGGGTCCAAAATCTGGATTGCCATCCCTTAAACCCACACCACATCACGAGCTGCATAGTCTTTTTCTAGTGGCTCAGGTTCTATGCTTCAATCAGCTGTCAATCTCCACCACTCAATATTTTCTCCCCCATCAGCCATGTTTGGGGATTGCAGCAATTGTCAAATAATAACAACTTGGTATCAAGCTTAGTTGTTCGGACCAAATACTGTTTCATTCGATCTCAATGGTGTGATTTCTTCATCCTCAGATACTCATTGCCTGGCTATGTTTCATTGGCTCAATAGATGTTAGCTAAGACTACAACCCCATAATTGACAGCAACCGAAGTTTGAAAACTTGTAGCAAATAGCTGTTTGAATCTCCTTCAAGATATAGATGTAGAGCGGCCTAATCTTTTTACGAGACTTAGAATTGACACCTAGAAAGAATACAGGAGATAGGTGAAAATCTTCTCAAAACAAAACAATGCAACGAAATTCAGTCCGTGTGTGTTGGTTGGCTCTTATTTTGAAATAGGGTAGCTCTATTAATAGTGTTTAGTTGGGTTAGACCCTCGAATCAAGCAGCAGTATCAGCAATAAGTCTGCCAAAAGAATCTTCTTTCTTCTCTTTCCTACACATCAAGTTCACATGCAGACTGACAAAAGACTATCACATGTCTTTGTTTCTTATGAAAATGTTAAATGACCTTCACTTTTTTACTTTGCTTTCAGTTATATCCTTACCCACCAACTACTGAAAGCAGTGGAGCTCGTTACTTACATTACTACTCCTCCCCACCCTTCATTACATATCCTCATATGCATTGAACATAAGATAGGCACTTCTTTCTAAGAAGAAAAAACGGCTTTTCTCTTATCTTTCAAAATTTAGCCATGAATCTGATTCTACTATTTGTCTTAGCTTCCTTGGTTCCAAGTTCCCTTCTGTTGGAAGTTCAGGCTGCTCATTCCCACCCGTCAAGAACATATTCTCATATTACTGTCATGGGTCTTGTTTATTGTGACACCTGCTCCAACAACACCTTCTCCAAACACAGTTACTTCTTATCAGGTAAAGCCCGATTTCATTTCTTCCCGCTATATAGTTAATAGAGTAAGCTGAAGCTAAAGTTTAAGTCCTAATTTCAACTAGTTGAACCTGAACTAGAGTTCAAATGGCAGAACTCGTATCTATTTTTTGTAATTATTATGCTGTACGTTTGTCATTTTGAGTTTGTGAGTTTGAGTTATTTTTCCTTTTTCTAAGCTTTGATATTATGGTTGGGTTTGAATAGTTTTGAGTAACCTAATTTCAAAAAGAACATTTTATTTATTTTATTCAAAGAGGGATTGAAAAAATTGATAGTCGTCGGTGGACTGTGTGTTTATAAATGGGGGGAAAACTAAAAACAGGTGCAGAAGTTCGAATCGACTGCAAATTCAAAGCAGAAACGCCGCGTACGGCGGAGCAGATAG

mRNA sequence

ATGAAGTTGAGCCTCACCAACAGGGGAACAAAAGATTTCCTAATCAGACATCCAGTTGAAAACTACTTCGTTCTTAAAGAGTTGGTCCTAAGAAAGCTTGGTCCAATTTGGGACCTTCAAGCCATAGTTGTTCGGTTCCAACATGAGATTCCAACGACAGACTCCAAAGAAAAAGATAAGCCTATTGAAGATGACGATGAGGGGTGGATCCTTAAGGGCAAGATAAAAGTTGTCGACAACAATCATATAACTACTGGAGAAGTCGACGATTCAAAAGAAATTGAGCAAAGAACTTCTGTCTTCGATCATATCAAGCTTTCAGATACTCAATCAAGTCTTCCAAAGATTGGCGCAACCGAGAGCGTCGTTGCACCGCCCCGCTGCGCCCTAGACTTGAGAGCATCAAATTTGAAATTCTACTGGAGCGTCGTTGCACTTGTCGAGAGCATCGCTCGCGGCGTCCTCCAACCCCCTGCCTCTTCCATTGCACCATCGTCCGGCTCAAAACCTAGCCGCACGCTAGCATCGTTCATGATTGGATCCCACTCGAGTCGCCCAGCTGCTCGTCAATGCGTTCAGCTACTTGTCGTCGGTCGCACCGCCCAGCCAATCGTTTTTCGTCGGTTTGAACTGCATTTTGTCATCGGTTGTTTTGTTCGCCAGCCTCTATTGCCTCCTTATCGTTCCTTGTACTCCACTATAGAGCTCACTTTTTCACCAACTTTTGTTGTGTTGCAGAGCTCAATCTCAAGCATGGTAGAGGAAAACAAGATCCCTAAGCATTTTTACCATAACGGCGAGTCACCAGGCCGAATCAAGCAGCGGGGCAGCATTGAGATAAGCCATCACCACATATTGCTACCAAATAGGCTGTTGTCATTTTTCAATTCTCAAAGGCTCCAACACTTGAAAAGGCTCGGCCAACAAGCATTCTCAACCGCTCTGATTGCTCCAATTTACCCTTTAAAATCACTTTTCCGCAGAAGGCTGCTCATTCCCACCCGTCAAGAACATATTCTCATATTACTGTCATGGGTCTTGTTTATTGTGACACCTGCTCCAACAACACCTTCTCCAAACACAGTTACTTCTTATCAGGTGCAGAAGTTCGAATCGACTGCAAATTCAAAGCAGAAACGCCGCGTACGGCGGAGCAGATAG

Coding sequence (CDS)

ATGAAGTTGAGCCTCACCAACAGGGGAACAAAAGATTTCCTAATCAGACATCCAGTTGAAAACTACTTCGTTCTTAAAGAGTTGGTCCTAAGAAAGCTTGGTCCAATTTGGGACCTTCAAGCCATAGTTGTTCGGTTCCAACATGAGATTCCAACGACAGACTCCAAAGAAAAAGATAAGCCTATTGAAGATGACGATGAGGGGTGGATCCTTAAGGGCAAGATAAAAGTTGTCGACAACAATCATATAACTACTGGAGAAGTCGACGATTCAAAAGAAATTGAGCAAAGAACTTCTGTCTTCGATCATATCAAGCTTTCAGATACTCAATCAAGTCTTCCAAAGATTGGCGCAACCGAGAGCGTCGTTGCACCGCCCCGCTGCGCCCTAGACTTGAGAGCATCAAATTTGAAATTCTACTGGAGCGTCGTTGCACTTGTCGAGAGCATCGCTCGCGGCGTCCTCCAACCCCCTGCCTCTTCCATTGCACCATCGTCCGGCTCAAAACCTAGCCGCACGCTAGCATCGTTCATGATTGGATCCCACTCGAGTCGCCCAGCTGCTCGTCAATGCGTTCAGCTACTTGTCGTCGGTCGCACCGCCCAGCCAATCGTTTTTCGTCGGTTTGAACTGCATTTTGTCATCGGTTGTTTTGTTCGCCAGCCTCTATTGCCTCCTTATCGTTCCTTGTACTCCACTATAGAGCTCACTTTTTCACCAACTTTTGTTGTGTTGCAGAGCTCAATCTCAAGCATGGTAGAGGAAAACAAGATCCCTAAGCATTTTTACCATAACGGCGAGTCACCAGGCCGAATCAAGCAGCGGGGCAGCATTGAGATAAGCCATCACCACATATTGCTACCAAATAGGCTGTTGTCATTTTTCAATTCTCAAAGGCTCCAACACTTGAAAAGGCTCGGCCAACAAGCATTCTCAACCGCTCTGATTGCTCCAATTTACCCTTTAAAATCACTTTTCCGCAGAAGGCTGCTCATTCCCACCCGTCAAGAACATATTCTCATATTACTGTCATGGGTCTTGTTTATTGTGACACCTGCTCCAACAACACCTTCTCCAAACACAGTTACTTCTTATCAGGTGCAGAAGTTCGAATCGACTGCAAATTCAAAGCAGAAACGCCGCGTACGGCGGAGCAGATAG

Protein sequence

MKLSLTNRGTKDFLIRHPVENYFVLKELVLRKLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWILKGKIKVVDNNHITTGEVDDSKEIEQRTSVFDHIKLSDTQSSLPKIGATESVVAPPRCALDLRASNLKFYWSVVALVESIARGVLQPPASSIAPSSGSKPSRTLASFMIGSHSSRPAARQCVQLLVVGRTAQPIVFRRFELHFVIGCFVRQPLLPPYRSLYSTIELTFSPTFVVLQSSISSMVEENKIPKHFYHNGESPGRIKQRGSIEISHHHILLPNRLLSFFNSQRLQHLKRLGQQAFSTALIAPIYPLKSLFRRRLLIPTRQEHILILLSWVLFIVTPAPTTPSPNTVTSYQVQKFESTANSKQKRRVRRSR
Homology
[Close]
BLAST of CmUC05G095240 vs. NCBI nr
Match: KAA0026300.1 (uncharacterized protein E6C27_scaffold19G003090 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 7.6e-06
Identity = 48/146 (32.88%), Postives = 72/146 (49.32%), Query Frame = 0 

Query: 13  FLIRHPVENYFVLKELVLR---------KLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIE 72
           ++I H V+  FVLKEL+LR          L      + IVV+F  E+   DS+EK++ IE
Sbjct: 220 WVISHLVDKCFVLKELILRLTREKKIELDLEKFGTFEPIVVQFHQEVALKDSQEKERSIE 279

Query: 73  DDDEGWILKGKIKVVDNNHI--TTGEVDDSKEIEQRTSVFDHIKLS-DTQSSLPK----- 132
           +DDEGW +   ++VV  + I  T  E    + +E+     D ++ + D   S P+     
Sbjct: 280 EDDEGWTVDENLEVVACHAINATKEESIPPRSLEEEEVSKDLLRFNVDDFLSFPQETKTI 339

Query: 133 -IGATESVVAPPRCALDLRASNLKFY 141
            I A  +  A   CAL +   N KFY
Sbjct: 340 VINALLNSAASSSCALTITYENAKFY 365

[Close]
BLAST of CmUC05G095240 vs. NCBI nr
Match: TYK21493.1 (uncharacterized protein E5676_scaffold305G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 7.6e-06
Identity = 48/146 (32.88%), Postives = 72/146 (49.32%), Query Frame = 0 

Query: 13  FLIRHPVENYFVLKELVLR---------KLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIE 72
           ++I H V+  FVLKEL+LR          L      + IVV+F  E+   DS+EK++ IE
Sbjct: 185 WVISHLVDKCFVLKELILRLTREKKIELDLEKFGTFEPIVVQFHQEVALKDSQEKERSIE 244

Query: 73  DDDEGWILKGKIKVVDNNHI--TTGEVDDSKEIEQRTSVFDHIKLS-DTQSSLPK----- 132
           +DDEGW +   ++VV  + I  T  E    + +E+     D ++ + D   S P+     
Sbjct: 245 EDDEGWTVDENLEVVACHAINATKEESIPPRSLEEEEVSKDLLRFNVDDFLSFPQETKTI 304

Query: 133 -IGATESVVAPPRCALDLRASNLKFY 141
            I A  +  A   CAL +   N KFY
Sbjct: 305 VINALLNSAASSSCALTITYENAKFY 330

[Close]
BLAST of CmUC05G095240 vs. NCBI nr
Match: TYK22678.1 (uncharacterized protein E5676_scaffold195G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-05
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 0 

Query: 14  LIRHPVENYFVLKELVLRK-LGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWILK 73
           +I HPVE  FVLKEL+LR+ L      + +VVRF  E+   DS+EK++ IE+DDEGW + 
Sbjct: 54  VISHPVEKCFVLKELILRESLVQFGTFEPVVVRFHQEVAPEDSQEKERLIEEDDEGWTIN 113

Query: 74  GKIKVVDNNHITTGE 88
               VV  + I   E
Sbjct: 114 ENPGVVACHAINATE 128

[Close]
BLAST of CmUC05G095240 vs. NCBI nr
Match: TYK16284.1 (uncharacterized protein E5676_scaffold21G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 6.4e-05
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 14  LIRHPVENYFVLKELVLRKLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWIL 72
           LI HP+E +FVLKEL   K G   + + +VV+F  E+   DS+EK++ IE+DDEGWI+
Sbjct: 153 LISHPIEKFFVLKEL---KFG---NFEPVVVQFHQEVAPEDSQEKERSIEEDDEGWIV 204

[Close]
BLAST of CmUC05G095240 vs. NCBI nr
Match: KAA0054592.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-04
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 0 

Query: 14  LIRHPVENYFVLKELVLR---------KLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIED 72
           +I HPVE  FVLKEL+LR          L      + +VVRF  E+   DS+EK++ IE+
Sbjct: 36  VISHPVEKCFVLKELILRLAREKKIELDLEEFGTFEPVVVRFHQEVAAEDSQEKERLIEE 95

[Close]
BLAST of CmUC05G095240 vs. ExPASy TrEMBL
Match: A0A5A7SJC0 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G003090 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-06
Identity = 48/146 (32.88%), Postives = 72/146 (49.32%), Query Frame = 0 

Query: 13  FLIRHPVENYFVLKELVLR---------KLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIE 72
           ++I H V+  FVLKEL+LR          L      + IVV+F  E+   DS+EK++ IE
Sbjct: 220 WVISHLVDKCFVLKELILRLTREKKIELDLEKFGTFEPIVVQFHQEVALKDSQEKERSIE 279

Query: 73  DDDEGWILKGKIKVVDNNHI--TTGEVDDSKEIEQRTSVFDHIKLS-DTQSSLPK----- 132
           +DDEGW +   ++VV  + I  T  E    + +E+     D ++ + D   S P+     
Sbjct: 280 EDDEGWTVDENLEVVACHAINATKEESIPPRSLEEEEVSKDLLRFNVDDFLSFPQETKTI 339

Query: 133 -IGATESVVAPPRCALDLRASNLKFY 141
            I A  +  A   CAL +   N KFY
Sbjct: 340 VINALLNSAASSSCALTITYENAKFY 365

[Close]
BLAST of CmUC05G095240 vs. ExPASy TrEMBL
Match: A0A5D3DD54 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00300 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-06
Identity = 48/146 (32.88%), Postives = 72/146 (49.32%), Query Frame = 0 

Query: 13  FLIRHPVENYFVLKELVLR---------KLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIE 72
           ++I H V+  FVLKEL+LR          L      + IVV+F  E+   DS+EK++ IE
Sbjct: 185 WVISHLVDKCFVLKELILRLTREKKIELDLEKFGTFEPIVVQFHQEVALKDSQEKERSIE 244

Query: 73  DDDEGWILKGKIKVVDNNHI--TTGEVDDSKEIEQRTSVFDHIKLS-DTQSSLPK----- 132
           +DDEGW +   ++VV  + I  T  E    + +E+     D ++ + D   S P+     
Sbjct: 245 EDDEGWTVDENLEVVACHAINATKEESIPPRSLEEEEVSKDLLRFNVDDFLSFPQETKTI 304

Query: 133 -IGATESVVAPPRCALDLRASNLKFY 141
            I A  +  A   CAL +   N KFY
Sbjct: 305 VINALLNSAASSSCALTITYENAKFY 330

[Close]
BLAST of CmUC05G095240 vs. ExPASy TrEMBL
Match: A0A5D3DGT6 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G001240 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.2e-06
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 0 

Query: 14  LIRHPVENYFVLKELVLRK-LGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWILK 73
           +I HPVE  FVLKEL+LR+ L      + +VVRF  E+   DS+EK++ IE+DDEGW + 
Sbjct: 54  VISHPVEKCFVLKELILRESLVQFGTFEPVVVRFHQEVAPEDSQEKERLIEEDDEGWTIN 113

Query: 74  GKIKVVDNNHITTGE 88
               VV  + I   E
Sbjct: 114 ENPGVVACHAINATE 128

[Close]
BLAST of CmUC05G095240 vs. ExPASy TrEMBL
Match: A0A5D3CZ99 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00550 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-05
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 14  LIRHPVENYFVLKELVLRKLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWIL 72
           LI HP+E +FVLKEL   K G   + + +VV+F  E+   DS+EK++ IE+DDEGWI+
Sbjct: 153 LISHPIEKFFVLKEL---KFG---NFEPVVVQFHQEVAPEDSQEKERSIEEDDEGWIV 204

[Close]
BLAST of CmUC05G095240 vs. ExPASy TrEMBL
Match: A0A5D3DV04 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00250 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.1e-05
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 0 

Query: 14  LIRHPVENYFVLKELVLR---------KLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIED 72
           +I HPVE  FVLKEL+LR          L      + +VVRF  E+   DS+EK++ IE+
Sbjct: 36  VISHPVEKCFVLKELILRLAREKKIELDLEEFGTFEPVVVRFHQEVAAEDSQEKERLIEE 95

The following BLAST results are available for this feature:
BLAST of CmUC05G095240 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0026300.17.6e-0632.88uncharacterized protein E6C27_scaffold19G003090 [Cucumis melo var. makuwa][more]
TYK21493.17.6e-0632.88uncharacterized protein E5676_scaffold305G00300 [Cucumis melo var. makuwa][more]
TYK22678.11.7e-0545.33uncharacterized protein E5676_scaffold195G001240 [Cucumis melo var. makuwa][more]
TYK16284.16.4e-0550.00uncharacterized protein E5676_scaffold21G00550 [Cucumis melo var. makuwa][more]
KAA0054592.11.9e-0444.78retrotransposon gag protein [Cucumis melo var. makuwa][more]
BLAST of CmUC05G095240 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC05G095240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SJC03.7e-0632.88Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G003090... [more]
A0A5D3DD543.7e-0632.88Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00300... [more]
A0A5D3DGT68.2e-0645.33Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3CZ993.1e-0550.00Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3DV049.1e-0544.78Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
BLAST of CmUC05G095240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC05G095240.1CmUC05G095240.1mRNA