CmUC05G093240 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC05G093240
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr05: 13914927 .. 13915256 (+)
RNA-Seq Expression	CmUC05G093240
Synteny	CmUC05G093240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTACACTTGCTCAGATGCGCAATGATGAAGAGATTCAAAGAAAGAGTAGATAGATTTGAAGAAAGGATGAACGTCCTAAGAAGGCAATTTGCCACTGAATTTTCTGCCACAAAGCACAGGGTCCCAATACAACCTCAATTCCCCCCCCCCCCCCAACTTGAAGAAAGGATTGCGGTCATAGAGGCCTCAGTTAGAGCTCTAAGGAGACAAGCTCAAGGAAAAAATGACTTGGGTACCAAAGACTTGGTGGCACTGCAAGGTACTATCAAGGCAAACGTTAGCATGCTACAAAATGATCTTCGTTCACTGATGAAGGAGATCACCTAG

mRNA sequence

ATGCTACACTTGCTCAGATGCGCAATGATGAAGAGATTCAAAGAAAGAGTAGATAGATTTGAAGAAAGGATGAACGTCCTAAGAAGGCAATTTGCCACTGAATTTTCTGCCACAAAGCACAGGGTCCCAATACAACCTCAATTCCCCCCCCCCCCCCAACTTGAAGAAAGGATTGCGGTCATAGAGGCCTCAGTTAGAGCTCTAAGGAGACAAGCTCAAGGAAAAAATGACTTGGGTACCAAAGACTTGGTGGCACTGCAAGGTACTATCAAGGCAAACGTTAGCATGCTACAAAATGATCTTCGTTCACTGATGAAGGAGATCACCTAG

Coding sequence (CDS)

ATGCTACACTTGCTCAGATGCGCAATGATGAAGAGATTCAAAGAAAGAGTAGATAGATTTGAAGAAAGGATGAACGTCCTAAGAAGGCAATTTGCCACTGAATTTTCTGCCACAAAGCACAGGGTCCCAATACAACCTCAATTCCCCCCCCCCCCCCAACTTGAAGAAAGGATTGCGGTCATAGAGGCCTCAGTTAGAGCTCTAAGGAGACAAGCTCAAGGAAAAAATGACTTGGGTACCAAAGACTTGGTGGCACTGCAAGGTACTATCAAGGCAAACGTTAGCATGCTACAAAATGATCTTCGTTCACTGATGAAGGAGATCACCTAG

Protein sequence

MLHLLRCAMMKRFKERVDRFEERMNVLRRQFATEFSATKHRVPIQPQFPPPPQLEERIAVIEASVRALRRQAQGKNDLGTKDLVALQGTIKANVSMLQNDLRSLMKEIT

Homology

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BLAST of CmUC05G093240 vs. ExPASy TrEMBL
Match: A0A0A0KJL0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419480 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-04
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 21  EERMNVLRRQFATEFSATKHRVPIQPQ-FPPPPQLEERIAVIEASVRALRRQAQGKNDLG 80
           E+R++V + +F T+   T      QPQ FP   QLEERIA++EAS   L +Q Q ++D  
Sbjct: 81  EKRIDVSKGKFVTKLLLT------QPQNFPKLLQLEERIAILEASFETLGKQVQKESDSS 140

Query: 81  TKDLVALQGTIKANVSM 97
             D + LQG +KAN+SM
Sbjct: 141 GNDSMLLQGVVKANISM 151

The following BLAST results are available for this feature:

BLAST of CmUC05G093240 vs.


Match Name	E-value	Identity	Description

BLAST of CmUC05G093240 vs.


Match Name	E-value	Identity	Description

BLAST of CmUC05G093240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJL0	1.7e-04	44.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419480 PE=4 SV=1	[more]

BLAST of CmUC05G093240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 10..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC05G093240.1	CmUC05G093240.1	mRNA