CmUC05G092800 (gene) Watermelon (USVL531) v1

Overview
NameCmUC05G092800
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr05: 12657195 .. 12657956 (-)
RNA-Seq ExpressionCmUC05G092800
SyntenyCmUC05G092800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGTCTGCAAAAGTTATGAAGAAAGAGAAGAGGAAAGAGAGGGTGTTTGGCCGAATTAATGAGAATATCAAAAACTTCCAGACCCCTGGCATTCCGTCTAGGGATTTCCTTCCATCAGGGGCGCCCACTGGCTTCGAAACTATCCAAAAAAACCGAAAAGACTCAGAAGTTCCTTTGTCATTCACAGAAGAAGCCGAAAAGTCTTCCCCAATTAGCATGAAGTCCAATCGGGAAGAGTTTCCCTTCCAGACATTGCCACCCCCTCTTCAGCTCCCTCGAGCTCGCGTGTTCACCCCTCTTCAGCAGTCTCCAGCACACAAGGTTTCCCCGATCAAGAGCCCTTTCTTCCCAGCCGTTAGAAGGAGATCAGACCTCTTCAAACCCTTCCTAAAACACTTCAGCAGAGGAAAAACATCGTTCCTCAACCTTTGGTTAGCTTTGACAAATGCAGATCTACTTGAGGTTAGTTGTGCAAACTCTCAAGTCCCCCAACAATCTGGTAACAGGTCAGCACTCCCCCTCTCTTCTTCGCAAATATTTCACCAATCAAAAATTCTAATCCCAGGATCAAATATTCTCTTCTTGCGAGGCTCCCCAAGTTCTTACCGGCCCAAGCCAAATAAGATTCAAGACTTAGAAGAGGAATCACTCATCAGCATAAGTAGTGATGAATTGAATGAGCCAGAAGAAGATGAGAACCACTTAAGTTTGGTTTTGGATGAATCCATCGGTGAAGATCTAAATACTTTTCCAGACTAA

mRNA sequence

ATGCGGTCTGCAAAAGTTATGAAGAAAGAGAAGAGGAAAGAGAGGGTGTTTGGCCGAATTAATGAGAATATCAAAAACTTCCAGACCCCTGGCATTCCGTCTAGGGATTTCCTTCCATCAGGGGCGCCCACTGGCTTCGAAACTATCCAAAAAAACCGAAAAGACTCAGAAGTTCCTTTGTCATTCACAGAAGAAGCCGAAAAGTCTTCCCCAATTAGCATGAAGTCCAATCGGGAAGAGTTTCCCTTCCAGACATTGCCACCCCCTCTTCAGCTCCCTCGAGCTCGCGTGTTCACCCCTCTTCAGCAGTCTCCAGCACACAAGGTTTCCCCGATCAAGAGCCCTTTCTTCCCAGCCGTTAGAAGGAGATCAGACCTCTTCAAACCCTTCCTAAAACACTTCAGCAGAGGAAAAACATCGTTCCTCAACCTTTGGTTAGCTTTGACAAATGCAGATCTACTTGAGGTTAGTTGTGCAAACTCTCAAGTCCCCCAACAATCTGGTAACAGGTCAGCACTCCCCCTCTCTTCTTCGCAAATATTTCACCAATCAAAAATTCTAATCCCAGGATCAAATATTCTCTTCTTGCGAGGCTCCCCAAGTTCTTACCGGCCCAAGCCAAATAAGATTCAAGACTTAGAAGAGGAATCACTCATCAGCATAAGTAGTGATGAATTGAATGAGCCAGAAGAAGATGAGAACCACTTAAGTTTGGTTTTGGATGAATCCATCGGTGAAGATCTAAATACTTTTCCAGACTAA

Coding sequence (CDS)

ATGCGGTCTGCAAAAGTTATGAAGAAAGAGAAGAGGAAAGAGAGGGTGTTTGGCCGAATTAATGAGAATATCAAAAACTTCCAGACCCCTGGCATTCCGTCTAGGGATTTCCTTCCATCAGGGGCGCCCACTGGCTTCGAAACTATCCAAAAAAACCGAAAAGACTCAGAAGTTCCTTTGTCATTCACAGAAGAAGCCGAAAAGTCTTCCCCAATTAGCATGAAGTCCAATCGGGAAGAGTTTCCCTTCCAGACATTGCCACCCCCTCTTCAGCTCCCTCGAGCTCGCGTGTTCACCCCTCTTCAGCAGTCTCCAGCACACAAGGTTTCCCCGATCAAGAGCCCTTTCTTCCCAGCCGTTAGAAGGAGATCAGACCTCTTCAAACCCTTCCTAAAACACTTCAGCAGAGGAAAAACATCGTTCCTCAACCTTTGGTTAGCTTTGACAAATGCAGATCTACTTGAGGTTAGTTGTGCAAACTCTCAAGTCCCCCAACAATCTGGTAACAGGTCAGCACTCCCCCTCTCTTCTTCGCAAATATTTCACCAATCAAAAATTCTAATCCCAGGATCAAATATTCTCTTCTTGCGAGGCTCCCCAAGTTCTTACCGGCCCAAGCCAAATAAGATTCAAGACTTAGAAGAGGAATCACTCATCAGCATAAGTAGTGATGAATTGAATGAGCCAGAAGAAGATGAGAACCACTTAAGTTTGGTTTTGGATGAATCCATCGGTGAAGATCTAAATACTTTTCCAGACTAA

Protein sequence

MRSAKVMKKEKRKERVFGRINENIKNFQTPGIPSRDFLPSGAPTGFETIQKNRKDSEVPLSFTEEAEKSSPISMKSNREEFPFQTLPPPLQLPRARVFTPLQQSPAHKVSPIKSPFFPAVRRRSDLFKPFLKHFSRGKTSFLNLWLALTNADLLEVSCANSQVPQQSGNRSALPLSSSQIFHQSKILIPGSNILFLRGSPSSYRPKPNKIQDLEEESLISISSDELNEPEEDENHLSLVLDESIGEDLNTFPD
Homology
[Close]
BLAST of CmUC05G092800 vs. NCBI nr
Match: KAA0057401.1 (hypothetical protein E6C27_scaffold280G002750 [Cucumis melo var. makuwa] >TYK30100.1 hypothetical protein E5676_scaffold216G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 6.3e-09
Identity = 52/142 (36.62%), Postives = 71/142 (50.00%), Query Frame = 0 

Query: 108 KVSPIKSPFFPAVRRRSDLFKPFLKHFSRGKTSFLNLWLALTNADLLEVSCANSQVPQQS 167
           K   +KS   P  +R   LFKPF K FSR +TSF N W  +TN DLLE  C   QVP   
Sbjct: 175 KDKKLKSSKVP--KRNYPLFKPFRKQFSRKRTSFNNSWTKITNPDLLEEGCVKLQVPGIV 234

Query: 168 GNRSALPLSSSQIFHQSKILIPGSNILFLRGSPSSYRPKPNKIQDLEEESLISISSDELN 227
            N+S +  SS    + S       ++  +RG+            D EEES++S+SS++L 
Sbjct: 235 QNKSVISSSSLNHINHSSGSSQAHHVSLVRGTRIPL--------DSEEESVVSVSSEDLE 294

Query: 228 EPEEDENHLSLVLDESIGEDLN 250
             E+DE    +   E   ED+N
Sbjct: 295 RDEDDE----IKTSEEFHEDMN 302

[Close]
BLAST of CmUC05G092800 vs. ExPASy TrEMBL
Match: A0A5A7UV76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00800 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.0e-09
Identity = 52/142 (36.62%), Postives = 71/142 (50.00%), Query Frame = 0 

Query: 108 KVSPIKSPFFPAVRRRSDLFKPFLKHFSRGKTSFLNLWLALTNADLLEVSCANSQVPQQS 167
           K   +KS   P  +R   LFKPF K FSR +TSF N W  +TN DLLE  C   QVP   
Sbjct: 175 KDKKLKSSKVP--KRNYPLFKPFRKQFSRKRTSFNNSWTKITNPDLLEEGCVKLQVPGIV 234

Query: 168 GNRSALPLSSSQIFHQSKILIPGSNILFLRGSPSSYRPKPNKIQDLEEESLISISSDELN 227
            N+S +  SS    + S       ++  +RG+            D EEES++S+SS++L 
Sbjct: 235 QNKSVISSSSLNHINHSSGSSQAHHVSLVRGTRIPL--------DSEEESVVSVSSEDLE 294

Query: 228 EPEEDENHLSLVLDESIGEDLN 250
             E+DE    +   E   ED+N
Sbjct: 295 RDEDDE----IKTSEEFHEDMN 302

[Close]
BLAST of CmUC05G092800 vs. ExPASy TrEMBL
Match: A0A0A0KHK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G408260 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-06
Identity = 47/130 (36.15%), Postives = 62/130 (47.69%), Query Frame = 0 

Query: 55  DSEVPLSFTEEAEKSSPISMKSNREEFPFQTLPPPLQLPRARVFT---PLQQSPAHKVSP 114
           DS   L  + ++     I+  S++E      L PP Q+      +   P   S    +  
Sbjct: 58  DSNTSLPISNQSNNEVHIAFHSSKENLNNNLLKPPSQITSKVDISHKLPAVISLHQHMKK 117

Query: 115 IKSPFFPAVRRRSDLFKPFLKHFSRGKTSFLNLWLALTNADLLEVSCANSQVPQQSGNRS 174
            K       +R S+LFK F KHF+R KTSF N W  +TN D+LE SC   QVP    NRS
Sbjct: 118 NKCNSSKVSQRSSNLFKSFHKHFARKKTSFYNSWTKITNPDVLEASCVKIQVPGLEQNRS 177

Query: 175 A-LPLSSSQI 181
           A LPL +  I
Sbjct: 178 ASLPLLNKPI 187

The following BLAST results are available for this feature:
BLAST of CmUC05G092800 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0057401.16.3e-0936.62hypothetical protein E6C27_scaffold280G002750 [Cucumis melo var. makuwa] >TYK301... [more]
BLAST of CmUC05G092800 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC05G092800 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UV763.0e-0936.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KHK41.4e-0636.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G408260 PE=4 SV=1[more]
BLAST of CmUC05G092800 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC05G092800.1CmUC05G092800.1mRNA