CmUC05G091920 (gene) Watermelon (USVL531) v1

Overview
NameCmUC05G091920
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionPathogenesis-related homeodomain protein
LocationCmU531Chr05: 10926724 .. 10927570 (-)
RNA-Seq ExpressionCmUC05G091920
SyntenyCmUC05G091920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATTATTCGGCTATTTACCCTCTTCCAAGAAACACACAAGGTCAGATGCTGGCATTGTTTGAAGGGAGGTAATTCCGAGAACAATCCCAATTGTTTGTAGGTCTTTGTGATCACATTGATATTCCTCTTATCTAATCCCTCACGCATAAATGCTTAGTCTTAGTTATGAAAATCTAGAGTTTGTTGTTAGATATTTATTTGCATTTTCAAGTGAATGTTCTCATCAGACCTTTCTCTTGATATGTGTTAAACAATCAATAGCTCCATCCATTTAGTTGGAGAGATTGTTCTGTTAAACGACCTTGGATTTGTTCAGTATGAAGTCACATATGAATTCATATCAGCTGGCAGTAGTCCATTTCTTTTATCCTCTGCAGGGCCATCTTTGAATTTTGCAAGCTATGCCAACTTGAACACCCCTGGGAAAGAAGCCAGGCAAATAGAACTAGAGAGCTACAGCTACCCTTCGGCCTCGGAAGCTTTGCTGCAGATAGATCACTTATGGATGCAACATCGCTCTCAAGTCTAATTTTGACATTGCTTTGGCTCTTTGATCCATAGTTTAATGTCATCATCCTTAGTGAAATATTTTGCAATTAATCTGGTTATGCTATGTGAACTTTAGGTTCTGCAAAATCGAAATGTTGACATTTATGTCTAATGTAGTTCTCTGTACAAATTGAAAGCAATCGGATCTCCTGCAGTTGGATCCTACTTTTATCAAATTGAACGAGTAAAAATGCTGTCAGCAAGTCAAATTGGTATCAAATCCTCCTCCATGCTGATGGAGCTTACTTCCAAGATTTCTGGATGTTTTCATCTTCTGAACACTGGAAGGTGA

mRNA sequence

ATGGGAAATTATTCGGCTATTTACCCTCTTCCAAGAAACACACAAGGTCAGATGCTGGCATTGTTTGAAGGGAGGGCCATCTTTGAATTTTGCAAGCTATGCCAACTTGAACACCCCTGGGAAAGAAGCCAGGCAAATAGAACTAGAGAGCTACAGCTACCCTTCGGCCTCGGAAGCTTTGCTGCAGATAGATCACTTATGGATGCAACATCGCTCTCAAGTTCTGCAAAATCGAAATTTGGATCCTACTTTTATCAAATTGAACGAGTAAAAATGCTGTCAGCAAGTCAAATTGGTATCAAATCCTCCTCCATGCTGATGGAGCTTACTTCCAAGATTTCTGGATGTTTTCATCTTCTGAACACTGGAAGGTGA

Coding sequence (CDS)

ATGGGAAATTATTCGGCTATTTACCCTCTTCCAAGAAACACACAAGGTCAGATGCTGGCATTGTTTGAAGGGAGGGCCATCTTTGAATTTTGCAAGCTATGCCAACTTGAACACCCCTGGGAAAGAAGCCAGGCAAATAGAACTAGAGAGCTACAGCTACCCTTCGGCCTCGGAAGCTTTGCTGCAGATAGATCACTTATGGATGCAACATCGCTCTCAAGTTCTGCAAAATCGAAATTTGGATCCTACTTTTATCAAATTGAACGAGTAAAAATGCTGTCAGCAAGTCAAATTGGTATCAAATCCTCCTCCATGCTGATGGAGCTTACTTCCAAGATTTCTGGATGTTTTCATCTTCTGAACACTGGAAGGTGA

Protein sequence

MGNYSAIYPLPRNTQGQMLALFEGRAIFEFCKLCQLEHPWERSQANRTRELQLPFGLGSFAADRSLMDATSLSSSAKSKFGSYFYQIERVKMLSASQIGIKSSSMLMELTSKISGCFHLLNTGR
Homology
[Close]
BLAST of CmUC05G091920 vs. NCBI nr
Match: KAA0037199.1 (pathogenesis-related homeodomain protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 5.8e-08
Identity = 34/44 (77.27%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 25  RAIFEFCKLCQLEHPWERSQANRTRELQLPFGLGSFAADRSLMD 69
           RAIF+FCK CQLE PWE SQANRT ELQLPFGL S   DRSLM+
Sbjct: 290 RAIFDFCKPCQLERPWEGSQANRTIELQLPFGLRS---DRSLME 330

[Close]
BLAST of CmUC05G091920 vs. NCBI nr
Match: TYK13874.1 (pathogenesis-related homeodomain protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 5.8e-08
Identity = 34/44 (77.27%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 25  RAIFEFCKLCQLEHPWERSQANRTRELQLPFGLGSFAADRSLMD 69
           RAIF+FCK CQLE PWE SQANRT ELQLPFGL S   DRSLM+
Sbjct: 291 RAIFDFCKPCQLERPWEGSQANRTIELQLPFGLRS---DRSLME 331

[Close]
BLAST of CmUC05G091920 vs. ExPASy TrEMBL
Match: A0A5D3CS50 (Pathogenesis-related homeodomain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00610 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 34/44 (77.27%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 25  RAIFEFCKLCQLEHPWERSQANRTRELQLPFGLGSFAADRSLMD 69
           RAIF+FCK CQLE PWE SQANRT ELQLPFGL S   DRSLM+
Sbjct: 291 RAIFDFCKPCQLERPWEGSQANRTIELQLPFGLRS---DRSLME 331

[Close]
BLAST of CmUC05G091920 vs. ExPASy TrEMBL
Match: A0A5A7T752 (Pathogenesis-related homeodomain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G001120 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 34/44 (77.27%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 25  RAIFEFCKLCQLEHPWERSQANRTRELQLPFGLGSFAADRSLMD 69
           RAIF+FCK CQLE PWE SQANRT ELQLPFGL S   DRSLM+
Sbjct: 290 RAIFDFCKPCQLERPWEGSQANRTIELQLPFGLRS---DRSLME 330

The following BLAST results are available for this feature:
BLAST of CmUC05G091920 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037199.15.8e-0877.27pathogenesis-related homeodomain protein [Cucumis melo var. makuwa][more]
TYK13874.15.8e-0877.27pathogenesis-related homeodomain protein [Cucumis melo var. makuwa][more]
BLAST of CmUC05G091920 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC05G091920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CS502.8e-0877.27Pathogenesis-related homeodomain protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7T7522.8e-0877.27Pathogenesis-related homeodomain protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of CmUC05G091920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC05G091920.1CmUC05G091920.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific