CmUC05G089200 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC05G089200
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	LysM domain-containing protein
Location	CmU531Chr05: 7966522 .. 7966875 (-)
RNA-Seq Expression	CmUC05G089200
Synteny	CmUC05G089200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCCGCCTCTCTATTTGCAGAACTAGGCCATTGTCTTCACGATCCCTAATCGACGTCGTTTCCTGGTACTGCGCCTTGGGCCTGTTGGGCCTCATCCTGATTGGGTCCATCAGAGAAACTTCTTCCTCTTCCTCCTCCGGTGACCGGTTGCTGAGAGGGCGGCCGTGCGATGAGATTTATGTGGTCGGAGAAGGAGAAACACTTCATACCATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTTATTAAAATTATCGCCGCCCATAAACCTTCCAACTTCGGATTAATCCAACCTGCTTAA

mRNA sequence

ATGCCCCGCCTCTCTATTTGCAGAACTAGGCCATTGTCTTCACGATCCCTAATCGACGTCGTTTCCTGGTACTGCGCCTTGGGCCTGTTGGGCCTCATCCTGATTGGGTCCATCAGAGAAACTTCTTCCTCTTCCTCCTCCGGTGACCGGTTGCTGAGAGGGCGGCCGTGCGATGAGATTTATGTGGTCGGAGAAGGAGAAACACTTCATACCATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTTATTAAAATTATCGCCGCCCATAAACCTTCCAACTTCGGATTAATCCAACCTGCTTAA

Coding sequence (CDS)

ATGCCCCGCCTCTCTATTTGCAGAACTAGGCCATTGTCTTCACGATCCCTAATCGACGTCGTTTCCTGGTACTGCGCCTTGGGCCTGTTGGGCCTCATCCTGATTGGGTCCATCAGAGAAACTTCTTCCTCTTCCTCCTCCGGTGACCGGTTGCTGAGAGGGCGGCCGTGCGATGAGATTTATGTGGTCGGAGAAGGAGAAACACTTCATACCATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTTATTAAAATTATCGCCGCCCATAAACCTTCCAACTTCGGATTAATCCAACCTGCTTAA

Protein sequence

MPRLSICRTRPLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAAHKPSNFGLIQPA

Homology

[Close]

BLAST of CmUC05G089200 vs. NCBI nr
Match: KAG6576752.1 (hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014795.1 hypothetical protein SDJN02_22424, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181.8 bits (460), Expect = 3.4e-42
Identity = 92/120 (76.67%), Postives = 96/120 (80.00%), Query Frame = 0


Query: 1   MPRLSICRTRPLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGD--------RLL 60
           MP L   RT P SSR LIDVVSWYCAL LLGLILIGSIRETSSSS+S D         LL
Sbjct: 1   MPLLYTSRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLL 60

Query: 61  RGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAAHKPSNFG 113
            GR CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII++H P   G
Sbjct: 61  TGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKLG 120

[Close]

BLAST of CmUC05G089200 vs. NCBI nr
Match: XP_022985106.1 (uncharacterized protein LOC111483184 [Cucurbita maxima])

HSP 1 Score: 179.5 bits (454), Expect = 1.7e-41
Identity = 89/119 (74.79%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 1   MPRLSICRTRPLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGD-------RLLR 60
           MP L   RT P SSR LIDVVSWYCA+ +LGLILIGSIRETSSS+S+ D        LL 
Sbjct: 1   MPLLYTSRTEPPSSRLLIDVVSWYCAVAILGLILIGSIRETSSSASADDGSQMLRGNLLT 60

Query: 61  GRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAAHKPSNFG 113
           GR CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII++H P   G
Sbjct: 61  GRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKLG 119

[Close]

BLAST of CmUC05G089200 vs. NCBI nr
Match: XP_008439155.1 (PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo] >KAA0063496.1 Peptidoglycan-binding LysM domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 4.2e-40
Identity = 92/119 (77.31%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MPRLSICRTR----PLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRG-- 60
           MP +SI R+R      SSR LIDVVSWYCA+GLLGLILIGSIRETSSSS    R LRG  
Sbjct: 1   MPGVSIPRSRRPQYSSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSGDQGRSLRGNL 60

Query: 61  ---RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAAHKPSN 111
              RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIA+   +N
Sbjct: 61  VTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASSTHNN 119

[Close]

BLAST of CmUC05G089200 vs. NCBI nr
Match: KGN57357.2 (hypothetical protein Csa_009741 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 1.8e-38
Identity = 89/112 (79.46%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 1   MPRLSICRTR--PLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRG---- 60
           MP +S+ R+R    SSR LIDVVSWYCA+GLLGLILIGSIRETSSS     RLLRG    
Sbjct: 7   MPGVSVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSGDG--RLLRGNLVT 66

Query: 61  -RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAA 106
            RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIIA+
Sbjct: 67  WRPCDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIAS 116

[Close]

BLAST of CmUC05G089200 vs. NCBI nr
Match: XP_004150301.1 (uncharacterized protein LOC101210054 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 1.8e-38
Identity = 89/112 (79.46%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 1   MPRLSICRTR--PLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRG---- 60
           MP +S+ R+R    SSR LIDVVSWYCA+GLLGLILIGSIRETSSS     RLLRG    
Sbjct: 1   MPGVSVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSGDG--RLLRGNLVT 60

Query: 61  -RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAA 106
            RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIIA+
Sbjct: 61  WRPCDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIAS 110

[Close]

BLAST of CmUC05G089200 vs. ExPASy TrEMBL
Match: A0A6J1J769 (uncharacterized protein LOC111483184 OS=Cucurbita maxima OX=3661 GN=LOC111483184 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.2e-42
Identity = 89/119 (74.79%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 1   MPRLSICRTRPLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGD-------RLLR 60
           MP L   RT P SSR LIDVVSWYCA+ +LGLILIGSIRETSSS+S+ D        LL 
Sbjct: 1   MPLLYTSRTEPPSSRLLIDVVSWYCAVAILGLILIGSIRETSSSASADDGSQMLRGNLLT 60

Query: 61  GRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAAHKPSNFG 113
           GR CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII++H P   G
Sbjct: 61  GRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKLG 119

[Close]

BLAST of CmUC05G089200 vs. ExPASy TrEMBL
Match: A0A5A7VAP9 (Peptidoglycan-binding LysM domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold7478G00010 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.0e-40
Identity = 92/119 (77.31%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MPRLSICRTR----PLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRG-- 60
           MP +SI R+R      SSR LIDVVSWYCA+GLLGLILIGSIRETSSSS    R LRG  
Sbjct: 1   MPGVSIPRSRRPQYSSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSGDQGRSLRGNL 60

Query: 61  ---RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAAHKPSN 111
              RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIA+   +N
Sbjct: 61  VTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASSTHNN 119

[Close]

BLAST of CmUC05G089200 vs. ExPASy TrEMBL
Match: A0A1S3AXP2 (uncharacterized protein LOC103484036 OS=Cucumis melo OX=3656 GN=LOC103484036 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.0e-40
Identity = 92/119 (77.31%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MPRLSICRTR----PLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRG-- 60
           MP +SI R+R      SSR LIDVVSWYCA+GLLGLILIGSIRETSSSS    R LRG  
Sbjct: 1   MPGVSIPRSRRPQYSSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSGDQGRSLRGNL 60

Query: 61  ---RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAAHKPSN 111
              RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIA+   +N
Sbjct: 61  VTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASSTHNN 119

[Close]

BLAST of CmUC05G089200 vs. ExPASy TrEMBL
Match: A0A0A0L5R9 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G179200 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.5e-39
Identity = 89/112 (79.46%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 1   MPRLSICRTR--PLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRG---- 60
           MP +S+ R+R    SSR LIDVVSWYCA+GLLGLILIGSIRETSSS     RLLRG    
Sbjct: 1   MPGVSVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSGDG--RLLRGNLVT 60

Query: 61  -RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAA 106
            RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIIA+
Sbjct: 61  WRPCDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIAS 110

[Close]

BLAST of CmUC05G089200 vs. ExPASy TrEMBL
Match: A0A6J1DRZ3 (uncharacterized protein LOC111023841 OS=Momordica charantia OX=3673 GN=LOC111023841 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.2e-38
Identity = 81/108 (75.00%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 13  SSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGD-------RLLRGRPCDEIYVVGE 72
           SSR   DVVSWYCA+G+L LILIGSIRE++ S+ + D        L+RGRPCDEIYVVGE
Sbjct: 15  SSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGE 74

Query: 73  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAAHKPSNFGL 114
           GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII++  PSN GL
Sbjct: 75  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPSNSGL 122

[Close]

BLAST of CmUC05G089200 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 122.5 bits (306), Expect = 2.3e-28
Identity = 56/84 (66.67%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 19  DVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRGRPCDEIYVVGEGETLHTISDKCGD 78
           D+ +W  A+ LL LIL+ S+RE ++S+S        +PC+EIY+VGEGETLHTI DKCGD
Sbjct: 10  DMSAWCSAVVLLSLILLLSVRENNASNSIRGSQFSTKPCEEIYIVGEGETLHTIGDKCGD 69

Query: 79  PFIVERNPHIHDPDDVFPGLVIKI 103
           PFIVERNPHIHDPDDVFPGLV+KI
Sbjct: 70  PFIVERNPHIHDPDDVFPGLVLKI 93

[Close]

BLAST of CmUC05G089200 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 109.4 bits (272), Expect = 2.0e-24
Identity = 53/96 (55.21%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 19  DVVSWYCALGLLGLILIGSIRETSSSSSSGD------------RLLRGRPCDEIYVVGEG 78
           + V+ YC + LL L L GS++  S+   SG+            + +  RPC+E+YVVGEG
Sbjct: 10  NTVASYCLVALLILTLAGSVK-NSNGGGSGEYYRGRNCEVWRGKQMMERPCEELYVVGEG 69

Query: 79  ETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 103
           +TLH+IS+KCGDPFIVERNPHIHDPDDVFPGL+IK+
Sbjct: 70  DTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

[Close]

BLAST of CmUC05G089200 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 94.4 bits (233), Expect = 6.7e-20
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 0


Query: 13  SSRSLIDVVSWYCALGLLGLILIGSIRETSSSSS------SGDRLLRG----RP-CDEIY 72
           SS ++ + +SWYCA+    ++L+ S +     S+          ++ G    RP CDEIY
Sbjct: 5   SSMAVAEKISWYCAVFAAMMLLMNSFQVAQEGSTEIVEKQQPSMMITGYSHRRPACDEIY 64

Query: 73  VVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 103
            V EGETL TIS+KCGDP+IVE NPHIHD DD+FPGL+I+I
Sbjct: 65  EVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRI 105

The following BLAST results are available for this feature:

BLAST of CmUC05G089200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576752.1	3.4e-42	76.67	hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022985106.1	1.7e-41	74.79	uncharacterized protein LOC111483184 [Cucurbita maxima]	[more]
XP_008439155.1	4.2e-40	77.31	PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo] >KAA0063496.1 Pep...	[more]
KGN57357.2	1.8e-38	79.46	hypothetical protein Csa_009741 [Cucumis sativus]	[more]
XP_004150301.1	1.8e-38	79.46	uncharacterized protein LOC101210054 [Cucumis sativus]	[more]

BLAST of CmUC05G089200 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC05G089200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J769	8.2e-42	74.79	uncharacterized protein LOC111483184 OS=Cucurbita maxima OX=3661 GN=LOC111483184...	[more]
A0A5A7VAP9	2.0e-40	77.31	Peptidoglycan-binding LysM domain-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A1S3AXP2	2.0e-40	77.31	uncharacterized protein LOC103484036 OS=Cucumis melo OX=3656 GN=LOC103484036 PE=...	[more]
A0A0A0L5R9	8.5e-39	79.46	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G179200 PE=4 S...	[more]
A0A6J1DRZ3	3.2e-38	75.00	uncharacterized protein LOC111023841 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of CmUC05G089200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62150.1	2.3e-28	66.67	peptidoglycan-binding LysM domain-containing protein	[more]
AT4G25433.1	2.0e-24	55.21	peptidoglycan-binding LysM domain-containing protein	[more]
AT3G52790.1	6.7e-20	48.51	peptidoglycan-binding LysM domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 61..102 e-value: 2.0E-4 score: 21.4
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 60..102 e-value: 2.43577E-5 score: 37.0797
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 54..110 e-value: 3.9E-7 score: 31.5
None	No IPR available	PANTHER	PTHR33648	EMBRYO SAC 1	coord: 13..106
None	No IPR available	PANTHER	PTHR33648:SF31	PROTEIN, PUTATIVE-RELATED	coord: 13..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC05G089200.1	CmUC05G089200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity