CmUC05G088070 (gene) Watermelon (USVL531) v1

Overview
NameCmUC05G088070
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionSsrA-binding protein
LocationCmU531Chr05: 6735094 .. 6735684 (-)
RNA-Seq ExpressionCmUC05G088070
SyntenyCmUC05G088070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGAAAGGCTTGCACCATCTTCAACCAAAACCCTCGAGATCCTAAAAAGTCTCATTCCGACTCAGGTTAGGTCTCGAGTTTTTTAAGCAGTTGAAAAGTCATTTCAAACAACAAACTTTTTAATTTCTGAATAGAGTTTGTTTGATTGTTTGTTAATAATTGTAATTTTAAAAGTTAATTGACAATTGTGTTCTGTTTGTTTTTCAGAGCAAGAGAAGCGAGTGGATGTGAGGAATCTTCAAGGGGAGGTGATGGCGTGTGGGTATGAAGATGTGCACGTGATGTGGTCTATTTTAGACAAGGCCAATTCAACAGCCACTGCTACTGCCGCCACTTGTAATGTGTCTTCTTAACCACGGACGACTGACGTCGCTGCTGCTGCCGCCGTCGTCACCGGTTGCTTAATTGTTGTTGTACATAAACCCAGCAATACCTCTCTTTCTCTGTGTTATTTTGGAGTTTGATGATTTTTGTTTATTTGTAGGGAATGAATCCCCATGATTTGAAGCTTTTAATCATGGTGAGATTTAAGCTTTTTATTACTCTTAAATCTTAA

mRNA sequence

ATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGAAAGGCTTGCACCATCTTCAACCAAAACCCTCGAGATCCTAAAAAGTCTCATTCCGACTCAGAGCAAGAGAAGCGAGTGGATGTGAGGAATCTTCAAGGGGAGCCACTGCTACTGCCGCCACTTGTAATGTGTCTTCTTAACCACGGACGACTGACGTCGCTGCTGCTGCCGCCGTCGTCACCGGGAATGAATCCCCATGATTTGAAGCTTTTAATCATGGTGAGATTTAAGCTTTTTATTACTCTTAAATCTTAA

Coding sequence (CDS)

ATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGAAAGGCTTGCACCATCTTCAACCAAAACCCTCGAGATCCTAAAAAGTCTCATTCCGACTCAGAGCAAGAGAAGCGAGTGGATGTGAGGAATCTTCAAGGGGAGCCACTGCTACTGCCGCCACTTGTAATGTGTCTTCTTAACCACGGACGACTGACGTCGCTGCTGCTGCCGCCGTCGTCACCGGGAATGAATCCCCATGATTTGAAGCTTTTAATCATGGTGAGATTTAAGCTTTTTATTACTCTTAAATCTTAA

Protein sequence

MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEPLLLPPLVMCLLNHGRLTSLLLPPSSPGMNPHDLKLLIMVRFKLFITLKS
Homology
BLAST of CmUC05G088070 vs. NCBI nr
Match: XP_008439007.1 (PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo] >KAA0052144.1 uncharacterized protein E6C27_scaffold1589G00140 [Cucumis melo var. makuwa] >TYK30595.1 uncharacterized protein E5676_scaffold60158G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 6.3e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE 48
          MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE 47

BLAST of CmUC05G088070 vs. NCBI nr
Match: KAG7018537.1 (putative GTP diphosphokinase CRSH, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.4 bits (246), Expect = 1.8e-17
Identity = 55/87 (63.22%), Postives = 63/87 (72.41%), Query Frame = 0

Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEPLLL----PPLVM 60
          MASWKKTIISPFRKACTIFNQ+PRDPKKS SDSEQEKRVDVRNLQGE +        ++ 
Sbjct: 1  MASWKKTIISPFRKACTIFNQHPRDPKKSPSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 CLLNHGRLTSLLLPPSSPGMNPHDLKL 84
           +L+    T+      +  MNPHDLKL
Sbjct: 61 SILDKANSTTTTATACNE-MNPHDLKL 86

BLAST of CmUC05G088070 vs. NCBI nr
Match: XP_038898749.1 (uncharacterized protein LOC120086267 [Benincasa hispida])

HSP 1 Score: 97.8 bits (242), Expect = 5.4e-17
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0

Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE 48
          MASWKKTIISPFRKACTIFNQN RDPKKSHSDSEQEKRVDVRNLQGE
Sbjct: 1  MASWKKTIISPFRKACTIFNQNTRDPKKSHSDSEQEKRVDVRNLQGE 47

BLAST of CmUC05G088070 vs. NCBI nr
Match: XP_022138108.1 (uncharacterized protein LOC111009357 [Momordica charantia])

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 0

Query: 1   MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE 48
           MASWKKTIISPFRKACTIFNQ PRDPKKSHSDSEQEKRVDVR+LQGE
Sbjct: 58  MASWKKTIISPFRKACTIFNQQPRDPKKSHSDSEQEKRVDVRDLQGE 104

BLAST of CmUC05G088070 vs. NCBI nr
Match: XP_004147637.1 (uncharacterized protein LOC101206709 [Cucumis sativus] >KGN57215.1 hypothetical protein Csa_010169 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-16
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0

Query: 1  MASWKKTIISPFRKACTIFNQNPRD-PKKSHSDSEQEKRVDVRNLQGE 48
          MASWKKTIISPFRKACTIFNQNPRD PKKSHSDSEQEKRVDVRNLQGE
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGE 48

BLAST of CmUC05G088070 vs. ExPASy TrEMBL
Match: A0A5A7U9W0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold60158G00010 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.1e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE 48
          MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE 47

BLAST of CmUC05G088070 vs. ExPASy TrEMBL
Match: A0A1S3AXS6 (uncharacterized protein LOC103483930 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483930 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.1e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE 48
          MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE 47

BLAST of CmUC05G088070 vs. ExPASy TrEMBL
Match: A0A6J1CC51 (uncharacterized protein LOC111009357 OS=Momordica charantia OX=3673 GN=LOC111009357 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.8e-17
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 0

Query: 1   MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE 48
           MASWKKTIISPFRKACTIFNQ PRDPKKSHSDSEQEKRVDVR+LQGE
Sbjct: 58  MASWKKTIISPFRKACTIFNQQPRDPKKSHSDSEQEKRVDVRDLQGE 104

BLAST of CmUC05G088070 vs. ExPASy TrEMBL
Match: A0A0A0L5H1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171230 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.6e-17
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0

Query: 1  MASWKKTIISPFRKACTIFNQNPRD-PKKSHSDSEQEKRVDVRNLQGE 48
          MASWKKTIISPFRKACTIFNQNPRD PKKSHSDSEQEKRVDVRNLQGE
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGE 48

BLAST of CmUC05G088070 vs. ExPASy TrEMBL
Match: A0A6J1IUX8 (uncharacterized protein LOC111479526 OS=Cucurbita maxima OX=3661 GN=LOC111479526 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-16
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 0

Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE 48
          MASWKKTIISPFRKACTIFNQ+PRDPKKS SDSEQEKRVDVRNLQGE
Sbjct: 1  MASWKKTIISPFRKACTIFNQHPRDPKKSPSDSEQEKRVDVRNLQGE 47

BLAST of CmUC05G088070 vs. TAIR 10
Match: AT3G17580.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48330.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 7.0e-07
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 0

Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKK-------SHSDSEQEKRVDVRNLQGE 48
          MASWKKTI +PF+KA T FNQ  + PKK       + +  E EKR+ V+ LQGE
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQSPKKGCRGRMDAQAREEHEKRM-VQELQGE 53

BLAST of CmUC05G088070 vs. TAIR 10
Match: AT1G48330.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 3.8e-05
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDS--EQEKRVDVRNLQGE 48
          MASWKKTI +PF+KA T FNQ  +  + +++ +  E EKR  V+ LQG+
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQTNRHANAKAREEHEKRT-VQELQGD 48

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008439007.16.3e-18100.00PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo] >KAA00... [more]
KAG7018537.11.8e-1763.22putative GTP diphosphokinase CRSH, chloroplastic [Cucurbita argyrosperma subsp. ... [more]
XP_038898749.15.4e-1797.87uncharacterized protein LOC120086267 [Benincasa hispida][more]
XP_022138108.11.2e-1695.74uncharacterized protein LOC111009357 [Momordica charantia][more]
XP_004147637.11.6e-1697.92uncharacterized protein LOC101206709 [Cucumis sativus] >KGN57215.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U9W03.1e-18100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3AXS63.1e-18100.00uncharacterized protein LOC103483930 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1CC515.8e-1795.74uncharacterized protein LOC111009357 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A0A0L5H17.6e-1797.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171230 PE=4 SV=1[more]
A0A6J1IUX81.7e-1695.74uncharacterized protein LOC111479526 OS=Cucurbita maxima OX=3661 GN=LOC111479526... [more]
Match NameE-valueIdentityDescription
AT3G17580.17.0e-0751.85unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G48330.13.8e-0548.98unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC05G088070.1CmUC05G088070.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane