CmUC05G084160 (gene) Watermelon (USVL531) v1

Overview
NameCmUC05G084160
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Descriptionglycine-rich cell wall structural protein
LocationCmU531Chr05: 3304704 .. 3304961 (+)
RNA-Seq ExpressionCmUC05G084160
SyntenyCmUC05G084160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGCTTTTTGTAATGCTTTTGTTGGTCGTCGTTGCCGCGGCGCGTAACGTTCCGGGCGGGGATCAGGTGGAGTTCGTGAACGCGGTTGAAGTGAAGGCGGCGGAGCTGCCGAGGGATGGTGGCCGTGGTGATGCTGTTCGTGACGAGAAGAATTTTGTCTATGGCGGAATTGGCGGCTTTGCTGGCATGGGCGGGTACGTACACTTAAAACCACTTTTAACCGTTTACAAACACTTCTTATCGCTCCATTAA

mRNA sequence

ATGGAGAAGCTTTTTGTAATGCTTTTGTTGGTCGTCGTTGCCGCGGCGCGTAACGTTCCGGGCGGGGATCAGGTGGAGTTCGTGAACGCGGTTGAAGTGAAGGCGGCGGAGCTGCCGAGGGATGGTGGCCGTGGTGATGCTGTTCGTGACGAGAAGAATTTTGTCTATGGCGGAATTGGCGGCTTTGCTGGCATGGGCGGGTACGTACACTTAAAACCACTTTTAACCGTTTACAAACACTTCTTATCGCTCCATTAA

Coding sequence (CDS)

ATGGAGAAGCTTTTTGTAATGCTTTTGTTGGTCGTCGTTGCCGCGGCGCGTAACGTTCCGGGCGGGGATCAGGTGGAGTTCGTGAACGCGGTTGAAGTGAAGGCGGCGGAGCTGCCGAGGGATGGTGGCCGTGGTGATGCTGTTCGTGACGAGAAGAATTTTGTCTATGGCGGAATTGGCGGCTTTGCTGGCATGGGCGGGTACGTACACTTAAAACCACTTTTAACCGTTTACAAACACTTCTTATCGCTCCATTAA

Protein sequence

MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHLKPLLTVYKHFLSLH
Homology
BLAST of CmUC05G084160 vs. NCBI nr
Match: XP_011652752.1 (glycine-rich protein 23 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 5.2e-24
Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = 0

Query: 1  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIG 60
          MEKLFVM LLV VAAAR VPGGDQ EFV AVEVKAAELPR+ GRGDAVRDEKNF+YGG+G
Sbjct: 1  MEKLFVMFLLVAVAAARGVPGGDQAEFVEAVEVKAAELPRNAGRGDAVRDEKNFIYGGVG 60

Query: 61 GFAGMGGYVHL 72
          GFAGMGGY  L
Sbjct: 61 GFAGMGGYAGL 71

BLAST of CmUC05G084160 vs. NCBI nr
Match: XP_038876527.1 (glycine-rich protein 23-like [Benincasa hispida])

HSP 1 Score: 117.5 bits (293), Expect = 5.7e-23
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 0

Query: 1  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIG 60
          MEKLFVMLLLV VA AR+VP GD+VEFV+AVEVKA E+P+DGGRGDAV D+KNFVYGGIG
Sbjct: 1  MEKLFVMLLLVAVAVARSVPSGDRVEFVDAVEVKAEEMPKDGGRGDAVHDQKNFVYGGIG 60

Query: 61 GFAGMGGYVHL 72
          GFAGMGGY  L
Sbjct: 61 GFAGMGGYAGL 71

BLAST of CmUC05G084160 vs. NCBI nr
Match: KAA0049179.1 (putative PE-PGRS family protein PE_PGRS46 [Cucumis melo var. makuwa] >TYK17381.1 putative PE-PGRS family protein PE_PGRS46 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 7.5e-23
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 0

Query: 1  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIG 60
          MEKLFV+ LLV +AAAR VPGGDQ EFV AVEVKAAELPR+ GRGD VRDEKNF+YGG+G
Sbjct: 1  MEKLFVLFLLVAIAAARGVPGGDQAEFVEAVEVKAAELPRNAGRGDNVRDEKNFIYGGVG 60

Query: 61 GFAGMGGYVHL 72
          GFAGMGGY  L
Sbjct: 61 GFAGMGGYAGL 71

BLAST of CmUC05G084160 vs. NCBI nr
Match: XP_008439361.1 (PREDICTED: uncharacterized PE-PGRS family protein PE_PGRS46 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 2.2e-22
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 0

Query: 1  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIG 60
          MEKLFV+ LLV +AAAR VPGGDQ EFV AVEVKA ELPR+ GRGD VRDEKNF+YGG+G
Sbjct: 1  MEKLFVLFLLVAIAAARGVPGGDQAEFVEAVEVKAVELPRNAGRGDNVRDEKNFIYGGVG 60

Query: 61 GFAGMGGYVHL 72
          GFAGMGGY  L
Sbjct: 61 GFAGMGGYAGL 71

BLAST of CmUC05G084160 vs. NCBI nr
Match: KAE8650313.1 (hypothetical protein Csa_010764 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.2e-20
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 0

Query: 7  MLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMG 66
          M LLV VAAAR VPGGDQ EFV AVEVKAAELPR+ GRGDAVRDEKNF+YGG+GGFAGMG
Sbjct: 1  MFLLVAVAAARGVPGGDQAEFVEAVEVKAAELPRNAGRGDAVRDEKNFIYGGVGGFAGMG 60

Query: 67 GYVHL 72
          GY  L
Sbjct: 61 GYAGL 65

BLAST of CmUC05G084160 vs. ExPASy TrEMBL
Match: A0A5D3CZJ9 (Putative PE-PGRS family protein PE_PGRS46 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002410 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.6e-23
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 0

Query: 1  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIG 60
          MEKLFV+ LLV +AAAR VPGGDQ EFV AVEVKAAELPR+ GRGD VRDEKNF+YGG+G
Sbjct: 1  MEKLFVLFLLVAIAAARGVPGGDQAEFVEAVEVKAAELPRNAGRGDNVRDEKNFIYGGVG 60

Query: 61 GFAGMGGYVHL 72
          GFAGMGGY  L
Sbjct: 61 GFAGMGGYAGL 71

BLAST of CmUC05G084160 vs. ExPASy TrEMBL
Match: A0A1S3AYL0 (uncharacterized PE-PGRS family protein PE_PGRS46 OS=Cucumis melo OX=3656 GN=LOC103484176 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 0

Query: 1  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIG 60
          MEKLFV+ LLV +AAAR VPGGDQ EFV AVEVKA ELPR+ GRGD VRDEKNF+YGG+G
Sbjct: 1  MEKLFVLFLLVAIAAARGVPGGDQAEFVEAVEVKAVELPRNAGRGDNVRDEKNFIYGGVG 60

Query: 61 GFAGMGGYVHL 72
          GFAGMGGY  L
Sbjct: 61 GFAGMGGYAGL 71

BLAST of CmUC05G084160 vs. ExPASy TrEMBL
Match: A0A6J1IHK9 (glycine-rich cell wall structural protein OS=Cucurbita maxima OX=3661 GN=LOC111473638 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.8e-20
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 0

Query: 1  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIG 60
          MEKLFVML L VVAAARNVPG +QV+FV+AVEVKAAELP  G  G AVRDEKNF+YGG+G
Sbjct: 1  MEKLFVMLFLAVVAAARNVPGAEQVQFVDAVEVKAAELPTAG--GGAVRDEKNFIYGGVG 60

Query: 61 GFAGMGGYVHL 72
          GFAGMGGY  L
Sbjct: 61 GFAGMGGYAGL 69

BLAST of CmUC05G084160 vs. ExPASy TrEMBL
Match: A0A0A0L460 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133210 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.1e-19
Identity = 54/69 (78.26%), Postives = 58/69 (84.06%), Query Frame = 0

Query: 1  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGI- 60
          MEKLFVM LLV VAAAR VPGGDQ EFV AVEVKAAELPR+ GRGDAVRDEKNF+YGG+ 
Sbjct: 1  MEKLFVMFLLVAVAAARGVPGGDQAEFVEAVEVKAAELPRNAGRGDAVRDEKNFIYGGVG 60

Query: 61 -GGFAGMGG 68
           GG   +GG
Sbjct: 61 LGGLPMLGG 69

BLAST of CmUC05G084160 vs. ExPASy TrEMBL
Match: A0A6J1G005 (glycine-rich cell wall structural protein 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449466 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.3e-16
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 0

Query: 1  MEKLFVMLLLVVVA---AARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYG 60
          MEKLFVML L VVA   AARNVPG ++V+FV+AV+VKAAEL   G  GDA RDEK F+YG
Sbjct: 1  MEKLFVMLFLAVVAAATAARNVPGAEKVQFVDAVQVKAAELLAAG--GDAGRDEKTFIYG 60

Query: 61 GIGGFAGMGGYVHL 72
          G+GGFAGMGGY  L
Sbjct: 61 GVGGFAGMGGYAGL 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011652752.15.2e-2484.51glycine-rich protein 23 [Cucumis sativus][more]
XP_038876527.15.7e-2381.69glycine-rich protein 23-like [Benincasa hispida][more]
KAA0049179.17.5e-2380.28putative PE-PGRS family protein PE_PGRS46 [Cucumis melo var. makuwa] >TYK17381.1... [more]
XP_008439361.12.2e-2278.87PREDICTED: uncharacterized PE-PGRS family protein PE_PGRS46 [Cucumis melo][more]
KAE8650313.11.2e-2083.08hypothetical protein Csa_010764 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CZJ93.6e-2380.28Putative PE-PGRS family protein PE_PGRS46 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A1S3AYL01.1e-2278.87uncharacterized PE-PGRS family protein PE_PGRS46 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A6J1IHK93.8e-2078.87glycine-rich cell wall structural protein OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A0A0L4604.1e-1978.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133210 PE=4 SV=1[more]
A0A6J1G0057.3e-1670.27glycine-rich cell wall structural protein 1 isoform X2 OS=Cucurbita moschata OX=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34463GLYCINE-RICH PROTEINcoord: 4..71
NoneNo IPR availablePANTHERPTHR34463:SF12GLYCINE-RICH PROTEINcoord: 4..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC05G084160.1CmUC05G084160.1mRNA