CmUC05G082560 (gene) Watermelon (USVL531) v1

Overview
NameCmUC05G082560
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr05: 1860487 .. 1860876 (+)
RNA-Seq ExpressionCmUC05G082560
SyntenyCmUC05G082560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAGAAAGACGACAACACAAGTCGTGAAATGGCTGTGTGGCTGCGCTGAAGAAAATGAAGCCGCCGCCATGGGCGTAGATCAAAATGGGAAGTTTGTTGGTGGGATTTTGGGGAATATTGTGGGCTTATAGAGGCGAATGAAGGTTTTATTGGAAGGGTTTAGGGGAATGTCTTTAGAAATTGTAGAGACATTATAGGTGTTGGGATTGGGGGTTTGTGTCGGGGATATTGTGGGAAATAGGTCAGGTCTGGTGATTGAGCCGTCTGGGTTGAGCTTGATGTTGAGAAGCTCGAAGGGAACACTAATGGAGGTTGTTGCAGTTGCAGAGGGGGATTCCGCCATTGGAGATGGAGAAGATGGTGAATGTTTTGGTGGTCGGTTTTGA

mRNA sequence

ATGAGCAGAAAGACGACAACACAAGTCGTGAAATGGCTGTGTGGCTGCGCTGAAGAAAATGAAGCCGCCGCCATGGGCGTAGATCAAAATGGGAAGTCAGGTCTGGTGATTGAGCCGTCTGGGTTGAGCTTGATGTTGAGAAGCTCGAAGGGAACACTAATGGAGGTTGTTGCAGTTGCAGAGGGGGATTCCGCCATTGGAGATGGAGAAGATGGTGAATGTTTTGGTGGTCGGTTTTGA

Coding sequence (CDS)

ATGAGCAGAAAGACGACAACACAAGTCGTGAAATGGCTGTGTGGCTGCGCTGAAGAAAATGAAGCCGCCGCCATGGGCGTAGATCAAAATGGGAAGTCAGGTCTGGTGATTGAGCCGTCTGGGTTGAGCTTGATGTTGAGAAGCTCGAAGGGAACACTAATGGAGGTTGTTGCAGTTGCAGAGGGGGATTCCGCCATTGGAGATGGAGAAGATGGTGAATGTTTTGGTGGTCGGTTTTGA

Protein sequence

MSRKTTTQVVKWLCGCAEENEAAAMGVDQNGKSGLVIEPSGLSLMLRSSKGTLMEVVAVAEGDSAIGDGEDGECFGGRF
Homology
[Close]
BLAST of CmUC05G082560 vs. NCBI nr
Match: KAA0049015.1 (hypothetical protein E6C27_scaffold171G002400 [Cucumis melo var. makuwa] >TYK17549.1 hypothetical protein E5676_scaffold434G004190 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 4.0e-10
Identity = 42/75 (56.00%), Postives = 47/75 (62.67%), Query Frame = 0 

Query: 1  MSRKTTTQVVKWLCGCAEENEAAAMGVDQNGKSGLVIEPSGLSLMLRSSKGTLMEVVAVA 60
          MS    T+ VKWLCGCAE               GLVIEPS  SLMLR SKG++MEVV VA
Sbjct: 1  MSENAATRNVKWLCGCAE---------------GLVIEPSRFSLMLRRSKGSIMEVVEVA 60

Query: 61 EGDSAIGDGEDGECF 76
          + DS IGDGE+ E F
Sbjct: 61 KRDSVIGDGEESEWF 60

[Close]
BLAST of CmUC05G082560 vs. NCBI nr
Match: KGN56575.1 (hypothetical protein Csa_010993 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 5.0e-05
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 24 AMGVDQNGKSGLVIEPSGLSLMLRSSKGTLMEVVAVAEGDSAIGDGEDGECF 76
          ++G     + GLVI+PS  SLMLR SKG++MEVV VA+ DS IGDGE+ E F
Sbjct: 4  SVGGTVENRLGLVIQPSEFSLMLRHSKGSIMEVVEVAKRDSVIGDGEESEWF 55

[Close]
BLAST of CmUC05G082560 vs. ExPASy TrEMBL
Match: A0A5D3D3K3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004190 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 42/75 (56.00%), Postives = 47/75 (62.67%), Query Frame = 0 

Query: 1  MSRKTTTQVVKWLCGCAEENEAAAMGVDQNGKSGLVIEPSGLSLMLRSSKGTLMEVVAVA 60
          MS    T+ VKWLCGCAE               GLVIEPS  SLMLR SKG++MEVV VA
Sbjct: 1  MSENAATRNVKWLCGCAE---------------GLVIEPSRFSLMLRRSKGSIMEVVEVA 60

Query: 61 EGDSAIGDGEDGECF 76
          + DS IGDGE+ E F
Sbjct: 61 KRDSVIGDGEESEWF 60

[Close]
BLAST of CmUC05G082560 vs. ExPASy TrEMBL
Match: A0A0A0L3R3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G124930 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-05
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 24 AMGVDQNGKSGLVIEPSGLSLMLRSSKGTLMEVVAVAEGDSAIGDGEDGECF 76
          ++G     + GLVI+PS  SLMLR SKG++MEVV VA+ DS IGDGE+ E F
Sbjct: 4  SVGGTVENRLGLVIQPSEFSLMLRHSKGSIMEVVEVAKRDSVIGDGEESEWF 55

The following BLAST results are available for this feature:
BLAST of CmUC05G082560 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0049015.14.0e-1056.00hypothetical protein E6C27_scaffold171G002400 [Cucumis melo var. makuwa] >TYK175... [more]
KGN56575.15.0e-0557.69hypothetical protein Csa_010993 [Cucumis sativus][more]
BLAST of CmUC05G082560 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC05G082560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D3K31.9e-1056.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L3R32.4e-0557.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G124930 PE=4 SV=1[more]
BLAST of CmUC05G082560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC05G082560.1CmUC05G082560.1mRNA