CmUC05G082070 (gene) Watermelon (USVL531) v1

Overview
NameCmUC05G082070
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Descriptionpentatricopeptide repeat-containing protein DOT4, chloroplastic-like
LocationCmU531Chr05: 1518160 .. 1518543 (-)
RNA-Seq ExpressionCmUC05G082070
SyntenyCmUC05G082070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTGCTTTTCGAGATGTGGACGCAACCTGTTTGTCATAAGTCCCAAAAGAAAAATTTATACGATAGGTCCCACGATCGATGCTACTTCAACCACAAAACCAGTGTACTACGAAGACCCAGTTGAATTTTATGCTCAACGAGAGGGTGTAATATCTTGGAAGTTTAAAATCACCAATTTCAACCAGACTCTGCTTTTGGCTTCTTCAAGATGATGTTCTCAAAATGGGCACAGGCCAGATCATGTGACAATGCACAACGTAATAAGAGCCATTGACTCATTCAGCAGGGATTCAATGATTTAGGTGATGCATGGAGGAGTGATCAAAAAGGGTTTTGAGTCAGAAGTGGCAGTTTCAACAGCCCTTCTTGGATTTTATTAA

mRNA sequence

ATGTTGTGCTTTTCGAGATGTGGACGCAACCTGTTTGTCATAAGTCCCAAAAGAAAAATTTATACGATAGGTCCCACGATCGATGCTACTTCAACCACAAAACCAGTGTACTACGAAGACCCAGTTGAATTTTATGCTCAACGAGAGGACTCTGCTTTTGGCTTCTTCAAGATGATGTTCTCAAAATGGGCACAGGCCAGATCATGTGACAATGCACAACGAGTGATCAAAAAGGGTTTTGAGTCAGAAGTGGCAGTTTCAACAGCCCTTCTTGGATTTTATTAA

Coding sequence (CDS)

ATGTTGTGCTTTTCGAGATGTGGACGCAACCTGTTTGTCATAAGTCCCAAAAGAAAAATTTATACGATAGGTCCCACGATCGATGCTACTTCAACCACAAAACCAGTGTACTACGAAGACCCAGTTGAATTTTATGCTCAACGAGAGGACTCTGCTTTTGGCTTCTTCAAGATGATGTTCTCAAAATGGGCACAGGCCAGATCATGTGACAATGCACAACGAGTGATCAAAAAGGGTTTTGAGTCAGAAGTGGCAGTTTCAACAGCCCTTCTTGGATTTTATTAA

Protein sequence

MLCFSRCGRNLFVISPKRKIYTIGPTIDATSTTKPVYYEDPVEFYAQREDSAFGFFKMMFSKWAQARSCDNAQRVIKKGFESEVAVSTALLGFY
Homology
BLAST of CmUC05G082070 vs. NCBI nr
Match: XP_038885271.1 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g01580 [Benincasa hispida])

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-24
Identity = 74/131 (56.49%), Postives = 78/131 (59.54%), Query Frame = 0

Query: 1   MLCFSRCGRNLFVISPKRKIYTIGPTIDATSTTKPVYYEDPVEFYAQRED---------- 60
           MLCFSRC RNLFVISP RK YTIGP +DATST K VYYEDPVE+YAQRED          
Sbjct: 1   MLCFSRCARNLFVISPNRKNYTIGPMMDATSTEKRVYYEDPVEYYAQREDVVSWTSKITN 60

Query: 61  --------SAFGFFKMMFSK---------WAQARSCDNAQ----------RVIKKGFESE 95
                   SAFGFFKMMFS           +  R+ D              VIK GFESE
Sbjct: 61  LVRTGQPESAFGFFKMMFSNGHRPNHVTMLSVIRAIDALSWNSMIEVMHGGVIKMGFESE 120

BLAST of CmUC05G082070 vs. NCBI nr
Match: XP_016898949.1 (PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-21
Identity = 72/131 (54.96%), Postives = 76/131 (58.02%), Query Frame = 0

Query: 1   MLCFSRCGRNLFVISPKRKIYTIGPTIDATSTTKPVYYEDPVEFYAQRED---------- 60
           MLCFSRC RNLFVISP RK YTI   +DATST K  Y+EDPVEFYAQRED          
Sbjct: 1   MLCFSRCARNLFVISPNRKNYTIRSMMDATSTKKRGYFEDPVEFYAQREDVISWTSKITN 60

Query: 61  --------SAFGFFKMMFS--------------KWAQARSCDNAQRV-----IKKGFESE 95
                   SAFGFFKMMFS              +   A S D+   V     IK GFESE
Sbjct: 61  LVRAGQPESAFGFFKMMFSNGHRPNYVTMLSVIRAIDALSWDSMIEVMHGVTIKMGFESE 120

BLAST of CmUC05G082070 vs. NCBI nr
Match: XP_022974593.1 (pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Cucurbita maxima] >XP_022974594.1 pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 110.5 bits (275), Expect = 7.8e-21
Identity = 68/131 (51.91%), Postives = 75/131 (57.25%), Query Frame = 0

Query: 1   MLCFSRCGRNLFVISPKRKIYTIGPTIDATSTTKPVYYEDPVEFYAQRE----------- 60
           MLCFSRC RNLFV +P+RK YTIGP IDATS  K  YYEDPV F+AQ+E           
Sbjct: 1   MLCFSRCARNLFVKNPQRKNYTIGPVIDATSAKKQAYYEDPVGFFAQQEDVISWTSKITN 60

Query: 61  -------DSAFGFFKMMFSK---------WAQARSCDNAQ----------RVIKKGFESE 95
                  DSAFGFFKMMF+           +  R+ D              VIK GFESE
Sbjct: 61  LVRTGQPDSAFGFFKMMFANGHRPNHVTMLSVLRAIDALSWESTIEVMHGGVIKMGFESE 120

BLAST of CmUC05G082070 vs. NCBI nr
Match: KAG7028589.1 (Pentatricopeptide repeat-containing protein DOT4, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.8 bits (260), Expect = 4.3e-19
Identity = 66/131 (50.38%), Postives = 73/131 (55.73%), Query Frame = 0

Query: 1   MLCFSRCGRNLFVISPKRKIYTIGPTIDATSTTKPVYYEDPVEFYAQRE----------- 60
           MLCFSRC RNLFV SP+RK YTIG  ID TS  K  YYEDPV F+A++E           
Sbjct: 1   MLCFSRCARNLFVKSPQRKNYTIGSVIDDTSAKKQAYYEDPVGFFAKQEDVISWTSKITN 60

Query: 61  -------DSAFGFFKMMFSK---------WAQARSCDNAQ----------RVIKKGFESE 95
                  DSAFGFFKMMF+           +  R+ D              VIK GFESE
Sbjct: 61  LVRTGQPDSAFGFFKMMFANGHRPNHVTMLSVLRAIDALSWESTIEVMHGGVIKMGFESE 120

BLAST of CmUC05G082070 vs. NCBI nr
Match: KAG6597124.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.8 bits (260), Expect = 4.3e-19
Identity = 66/131 (50.38%), Postives = 73/131 (55.73%), Query Frame = 0

Query: 1   MLCFSRCGRNLFVISPKRKIYTIGPTIDATSTTKPVYYEDPVEFYAQRE----------- 60
           MLCFSRC RNLFV SP+RK YTIG  ID TS  K  YYEDPV F+A++E           
Sbjct: 1   MLCFSRCARNLFVKSPQRKNYTIGSVIDDTSAKKQAYYEDPVGFFAKQEDVISWTSKITN 60

Query: 61  -------DSAFGFFKMMFSK---------WAQARSCDNAQ----------RVIKKGFESE 95
                  DSAFGFFKMMF+           +  R+ D              VIK GFESE
Sbjct: 61  LVRTGQPDSAFGFFKMMFANGHRPNHVTMLSVLRAIDALSWESTIEVMHGGVIKMGFESE 120

BLAST of CmUC05G082070 vs. ExPASy TrEMBL
Match: A0A0A0L489 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122420 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.5e-22
Identity = 72/131 (54.96%), Postives = 77/131 (58.78%), Query Frame = 0

Query: 1   MLCFSRCGRNLFVISPKRKIYTIGPTIDATSTTKPVYYEDPVEFYAQRED---------- 60
           MLCFSRC RNLFV+S KRK YTI   +DATST K VY+EDPVEFYAQRED          
Sbjct: 1   MLCFSRCARNLFVVSSKRKDYTIRSMVDATSTKKRVYFEDPVEFYAQREDVISWTSKITN 60

Query: 61  --------SAFGFFKMMFS--------------KWAQARSCDNAQR-----VIKKGFESE 95
                   SAFGFFKMMFS              +   A S D+        VIK GFESE
Sbjct: 61  LVRTGQPESAFGFFKMMFSNGHRPNYVTMLSVIRAIDALSWDSMIEVMHGVVIKMGFESE 120

BLAST of CmUC05G082070 vs. ExPASy TrEMBL
Match: A0A1S4DSI8 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucumis melo OX=3656 GN=LOC103484166 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.8e-22
Identity = 72/131 (54.96%), Postives = 76/131 (58.02%), Query Frame = 0

Query: 1   MLCFSRCGRNLFVISPKRKIYTIGPTIDATSTTKPVYYEDPVEFYAQRED---------- 60
           MLCFSRC RNLFVISP RK YTI   +DATST K  Y+EDPVEFYAQRED          
Sbjct: 1   MLCFSRCARNLFVISPNRKNYTIRSMMDATSTKKRGYFEDPVEFYAQREDVISWTSKITN 60

Query: 61  --------SAFGFFKMMFS--------------KWAQARSCDNAQRV-----IKKGFESE 95
                   SAFGFFKMMFS              +   A S D+   V     IK GFESE
Sbjct: 61  LVRAGQPESAFGFFKMMFSNGHRPNYVTMLSVIRAIDALSWDSMIEVMHGVTIKMGFESE 120

BLAST of CmUC05G082070 vs. ExPASy TrEMBL
Match: A0A6J1IGR3 (pentatricopeptide repeat-containing protein DOT4, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111473280 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.8e-21
Identity = 68/131 (51.91%), Postives = 75/131 (57.25%), Query Frame = 0

Query: 1   MLCFSRCGRNLFVISPKRKIYTIGPTIDATSTTKPVYYEDPVEFYAQRE----------- 60
           MLCFSRC RNLFV +P+RK YTIGP IDATS  K  YYEDPV F+AQ+E           
Sbjct: 1   MLCFSRCARNLFVKNPQRKNYTIGPVIDATSAKKQAYYEDPVGFFAQQEDVISWTSKITN 60

Query: 61  -------DSAFGFFKMMFSK---------WAQARSCDNAQ----------RVIKKGFESE 95
                  DSAFGFFKMMF+           +  R+ D              VIK GFESE
Sbjct: 61  LVRTGQPDSAFGFFKMMFANGHRPNHVTMLSVLRAIDALSWESTIEVMHGGVIKMGFESE 120

BLAST of CmUC05G082070 vs. ExPASy TrEMBL
Match: A0A6J1F1Z2 (pentatricopeptide repeat-containing protein DOT4, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441423 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.1e-19
Identity = 66/131 (50.38%), Postives = 73/131 (55.73%), Query Frame = 0

Query: 1   MLCFSRCGRNLFVISPKRKIYTIGPTIDATSTTKPVYYEDPVEFYAQRE----------- 60
           MLCFSRC RNLFV SP+RK YTIG  ID TS  K  YYEDPV F+A++E           
Sbjct: 1   MLCFSRCARNLFVKSPQRKNYTIGSVIDDTSAKKQAYYEDPVGFFAKQEDVISWTSKITN 60

Query: 61  -------DSAFGFFKMMFSK---------WAQARSCDNAQ----------RVIKKGFESE 95
                  DSAFGFFKMMF+           +  R+ D              VIK GFESE
Sbjct: 61  LVRTGQPDSAFGFFKMMFANGHRPNYVTMLSVLRAIDALSWESTIEVMHGGVIKMGFESE 120

BLAST of CmUC05G082070 vs. ExPASy TrEMBL
Match: A0A6J1D2H4 (pentatricopeptide repeat-containing protein DOT4, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016401 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.0e-18
Identity = 65/132 (49.24%), Postives = 74/132 (56.06%), Query Frame = 0

Query: 1   MLCFSRCGRNLFVISPKRKIYTIGPTIDATSTT-KPVYYEDPVEFYAQRED--------- 60
           MLCFSRC RNLFV SP+RK Y I P ++ATS+  K  YYEDPV FYAQRED         
Sbjct: 1   MLCFSRCARNLFVKSPQRKNYMIDPMVEATSSNKKQAYYEDPVGFYAQREDVISWTSKIT 60

Query: 61  ---------SAFGFFKMMFS--------------KWAQARSCDNAQR-----VIKKGFES 95
                    +AFGFFK MF+              +   A S ++        VIK GFES
Sbjct: 61  NLVRTGQSEAAFGFFKTMFANGHRPNHVTMLSVIRAIDALSWESMNEVVHGGVIKMGFES 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038885271.14.4e-2456.49LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g01... [more]
XP_016898949.11.2e-2154.96PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing pro... [more]
XP_022974593.17.8e-2151.91pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Cucurbita ... [more]
KAG7028589.14.3e-1950.38Pentatricopeptide repeat-containing protein DOT4, chloroplastic, partial [Cucurb... [more]
KAG6597124.14.3e-1950.38Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L4891.5e-2254.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122420 PE=4 SV=1[more]
A0A1S4DSI85.8e-2254.96LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g56... [more]
A0A6J1IGR33.8e-2151.91pentatricopeptide repeat-containing protein DOT4, chloroplastic-like OS=Cucurbit... [more]
A0A6J1F1Z22.1e-1950.38pentatricopeptide repeat-containing protein DOT4, chloroplastic-like OS=Cucurbit... [more]
A0A6J1D2H43.0e-1849.24pentatricopeptide repeat-containing protein DOT4, chloroplastic isoform X1 OS=Mo... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC05G082070.1CmUC05G082070.1mRNA