CmUC05G080490 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC05G080490
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Ty3/gypsy retrotransposon protein
Location	CmU531Chr05: 309728 .. 310532 (+)
RNA-Seq Expression	CmUC05G080490
Synteny	CmUC05G080490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAACACGCCCTACCGAAAAGGAAGTTCCTGGGGGGAGAAGGCAAGAGCTCAGGAGCAAGAGTGGAGCGAGAAACAGGGGGTTAAAGAACGAAAACAGAGGAAGGGTATGTGGACCAAAGGAAATTAAAAAAGGTGGAAATGCCAGTATTTGATGGCGAGCAACCAGACTTGTGGTTATTTAGAGCTGAGAGATATTTTGACATCCATCAACTATTTGATTCATAGAAAATTACGGTGACTTCAATTAGTTTTATGGGGCGGTGTTACATTGGTATCACTGGGCTGATGGACGAGAACGATTTTTCGATTGGGTGGACTTGAAACGCCGATTGCTCGACAGATTCCGACTATCGCAGGAAGGTTCCAATTGTGCTTGATTTCTTGCTGTTAGGCAGTTGAGCATGGTGTCAGAGTACAGAGAGCGCTTTGAGGCTCTTTCGGCACCCTTACCTCACCTTCTGGATGAAGTCTTGGAAAGCACGTTTCTTAACGGGTTGGACCCTGAGGTCAGAGCTGAAATCATCTGTTATGAGCCCAAGGGTCTGGGCCAAATTATGGGGGGGCCCAAAAGGTGGAAGATAAAAATTTAGTCATTGCCAATCGACTTAATACTAATAGGGGAATCAAACCCTATGTGTCAATTGGCCAGGGCTGTACGCCCTAGTGGGCCTGCCTTGAAAAGCCCAGCGAAGGCGATTAAGGCAGCTCCTATACGTTCAATCACGTTGTCAAACCCACTACCATACCAGAAGAAAGAAGTTCCTTTTAAACGACTATCAGATGCTGAGTTGCAAGCTTGA

mRNA sequence

ATGAGAAACACGCCCTACCGAAAAGGAAGTTCCTGGGGGGAGAAGGCAAGAGCTCAGGAGCAAGAGTGGAGCGAGAAACAGGGGGTTAAAGAACGAAAACAGAGGAAGGAGCTGAGAGATATTTTGACATCCATCAACTATTTGATTCATAGAAAATTACGGCAGTTGAGCATGGTGTCAGAGTACAGAGAGCGCTTTGAGGCTCTTTCGGCACCCTTACCTCACCTTCTGGATGAAGTCTTGGAAAGCACGTTTCTTAACGGGTTGGACCCTGAGGTCAGAGCTGAAATCATCTGTTATGAGCCCAAGGGGGAATCAAACCCTATGTGTCAATTGGCCAGGGCTGTACGCCCTAGTGGGCCTGCCTTGAAAAGCCCAGCGAAGGCGATTAAGGCAGCTCCTATACGTTCAATCACGTTGTCAAACCCACTACCATACCAGAAGAAAGAAGTTCCTTTTAAACGACTATCAGATGCTGAGTTGCAAGCTTGA

Coding sequence (CDS)

ATGAGAAACACGCCCTACCGAAAAGGAAGTTCCTGGGGGGAGAAGGCAAGAGCTCAGGAGCAAGAGTGGAGCGAGAAACAGGGGGTTAAAGAACGAAAACAGAGGAAGGAGCTGAGAGATATTTTGACATCCATCAACTATTTGATTCATAGAAAATTACGGCAGTTGAGCATGGTGTCAGAGTACAGAGAGCGCTTTGAGGCTCTTTCGGCACCCTTACCTCACCTTCTGGATGAAGTCTTGGAAAGCACGTTTCTTAACGGGTTGGACCCTGAGGTCAGAGCTGAAATCATCTGTTATGAGCCCAAGGGGGAATCAAACCCTATGTGTCAATTGGCCAGGGCTGTACGCCCTAGTGGGCCTGCCTTGAAAAGCCCAGCGAAGGCGATTAAGGCAGCTCCTATACGTTCAATCACGTTGTCAAACCCACTACCATACCAGAAGAAAGAAGTTCCTTTTAAACGACTATCAGATGCTGAGTTGCAAGCTTGA

Protein sequence

MRNTPYRKGSSWGEKARAQEQEWSEKQGVKERKQRKELRDILTSINYLIHRKLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQLARAVRPSGPALKSPAKAIKAAPIRSITLSNPLPYQKKEVPFKRLSDAELQA

Homology

[Close]

BLAST of CmUC05G080490 vs. NCBI nr
Match: KAA0031882.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 7.4e-11
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 52  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKG 105
           +L     V+++RERFEALSAPL HL DEVLESTFLNGLDPE++AE++ YEP G
Sbjct: 136 RLPSRKKVADFRERFEALSAPLSHLSDEVLESTFLNGLDPEIKAEVLSYEPVG 188

[Close]

BLAST of CmUC05G080490 vs. NCBI nr
Match: TYJ98385.1 (retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-08
Identity = 44/117 (37.61%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 52  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQ 111
           +++Q S V EYR  F+ L APL  + ++V+E TF+NGL P +RAE+    PKG +  M Q
Sbjct: 29  RIQQESSVEEYRNLFDKLVAPLSDIPEKVVEDTFMNGLLPWIRAEVFYGRPKGLAE-MMQ 88

Query: 112 LARAV----RPSGPALKSPAKAIKAAPIRSITLSNPLPYQ-KKEVPFKRLSDAELQA 164
           +A+ +    +P    + +  +     P+ +ITL N    + +KE  F+RL DAE QA
Sbjct: 89  IAQLITNSSKPMTGNITTENRGNTTFPVHTITLRNSNANEVRKETNFRRLPDAEFQA 144

[Close]

BLAST of CmUC05G080490 vs. NCBI nr
Match: RVW41094.1 (hypothetical protein CK203_069772 [Vitis vinifera])

HSP 1 Score: 68.2 bits (165), Expect = 7.7e-08
Identity = 44/132 (33.33%), Postives = 67/132 (50.76%), Query Frame = 0


Query: 53  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQL 112
           +RQ   +  YR  FE L+ PL  + +EV+ESTF+NGL PE+RAE+   +P G  + M   
Sbjct: 140 VRQQGTMVAYRREFEILATPLKGISEEVMESTFMNGLLPEIRAELRLLKPYGLGHLMEMA 199

Query: 113 AR----------AVRPSGPALKSPAKAIKAA-----------PIRSITLSNPLPYQKKEV 164
            R          A  P+GP      K + +A             R++ +      Q++E+
Sbjct: 200 QRVEDRNLAMRAACEPNGPNGPKSTKMLSSANRGEWKIGENFQTRAVAVGEKTMSQRREI 259

[Close]

BLAST of CmUC05G080490 vs. NCBI nr
Match: RVW50870.1 (Pentatricopeptide repeat-containing protein [Vitis vinifera])

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-07
Identity = 45/129 (34.88%), Postives = 67/129 (51.94%), Query Frame = 0


Query: 53  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQL 112
           +RQ   V+ YR  FE L+ PL  +L+EV+ESTF+NGL PE+RAE+   +  G  + M   
Sbjct: 342 VRQQGTVAAYRREFEILATPLKGILEEVMESTFMNGLLPEIRAELHLLQLYGLGHLMEMA 401

Query: 113 AR----------AVRPSGP--------ALKSPAKAIKAAPIRSITLSNPLPYQKKEVPFK 164
            R          A  P+GP          +   K  K    R++ +      Q++E+P K
Sbjct: 402 QRVEDRNLAMRAACEPNGPKSTKMLSSTNQGDWKIGKKFQTRAVVVGEKTMSQRREIPIK 461

[Close]

BLAST of CmUC05G080490 vs. NCBI nr
Match: KAA0066460.1 (uncharacterized protein E6C27_scaffold21G005610 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-07
Identity = 47/140 (33.57%), Postives = 70/140 (50.00%), Query Frame = 0


Query: 52  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPM-- 111
           +++Q S V EYR  F+ L APL  + ++V+E TF+NGL P +RAE+ C  PKG +  M  
Sbjct: 190 RIQQESSVEEYRNLFDKLVAPLSDIPEKVVEDTFMNGLLPWIRAEVFCGRPKGLAEMMQI 249

Query: 112 --------------------C-----QLARAVRPSGPALKSPAKAIKAAPIRSITLSNPL 164
                               C     Q+  + +P+   + +  +     PIR+ITL N  
Sbjct: 250 AQLVENKEFAQNEAKLNGYSCGKYNPQITNSSKPTTGNITTENRGNTTFPIRTITLRNSN 309

[Close]

BLAST of CmUC05G080490 vs. ExPASy TrEMBL
Match: A0A5A7SLB5 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46346G00030 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.6e-11
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 52  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKG 105
           +L     V+++RERFEALSAPL HL DEVLESTFLNGLDPE++AE++ YEP G
Sbjct: 136 RLPSRKKVADFRERFEALSAPLSHLSDEVLESTFLNGLDPEIKAEVLSYEPVG 188

[Close]

BLAST of CmUC05G080490 vs. ExPASy TrEMBL
Match: A0A5D3BJ44 (Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001280 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.2e-08
Identity = 44/117 (37.61%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 52  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQ 111
           +++Q S V EYR  F+ L APL  + ++V+E TF+NGL P +RAE+    PKG +  M Q
Sbjct: 29  RIQQESSVEEYRNLFDKLVAPLSDIPEKVVEDTFMNGLLPWIRAEVFYGRPKGLAE-MMQ 88

Query: 112 LARAV----RPSGPALKSPAKAIKAAPIRSITLSNPLPYQ-KKEVPFKRLSDAELQA 164
           +A+ +    +P    + +  +     P+ +ITL N    + +KE  F+RL DAE QA
Sbjct: 89  IAQLITNSSKPMTGNITTENRGNTTFPVHTITLRNSNANEVRKETNFRRLPDAEFQA 144

[Close]

BLAST of CmUC05G080490 vs. ExPASy TrEMBL
Match: A0A438E000 (Retrotrans_gag domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_069772 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.7e-08
Identity = 44/132 (33.33%), Postives = 67/132 (50.76%), Query Frame = 0


Query: 53  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQL 112
           +RQ   +  YR  FE L+ PL  + +EV+ESTF+NGL PE+RAE+   +P G  + M   
Sbjct: 140 VRQQGTMVAYRREFEILATPLKGISEEVMESTFMNGLLPEIRAELRLLKPYGLGHLMEMA 199

Query: 113 AR----------AVRPSGPALKSPAKAIKAA-----------PIRSITLSNPLPYQKKEV 164
            R          A  P+GP      K + +A             R++ +      Q++E+
Sbjct: 200 QRVEDRNLAMRAACEPNGPNGPKSTKMLSSANRGEWKIGENFQTRAVAVGEKTMSQRREI 259

[Close]

BLAST of CmUC05G080490 vs. ExPASy TrEMBL
Match: A0A438ET29 (Pentatricopeptide repeat-containing protein OS=Vitis vinifera OX=29760 GN=VvCHDh000351_0 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.8e-08
Identity = 45/129 (34.88%), Postives = 67/129 (51.94%), Query Frame = 0


Query: 53  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQL 112
           +RQ   V+ YR  FE L+ PL  +L+EV+ESTF+NGL PE+RAE+   +  G  + M   
Sbjct: 342 VRQQGTVAAYRREFEILATPLKGILEEVMESTFMNGLLPEIRAELHLLQLYGLGHLMEMA 401

Query: 113 AR----------AVRPSGP--------ALKSPAKAIKAAPIRSITLSNPLPYQKKEVPFK 164
            R          A  P+GP          +   K  K    R++ +      Q++E+P K
Sbjct: 402 QRVEDRNLAMRAACEPNGPKSTKMLSSTNQGDWKIGKKFQTRAVVVGEKTMSQRREIPIK 461

[Close]

BLAST of CmUC05G080490 vs. ExPASy TrEMBL
Match: A0A5A7VH17 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005610 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.3e-08
Identity = 47/140 (33.57%), Postives = 70/140 (50.00%), Query Frame = 0


Query: 52  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPM-- 111
           +++Q S V EYR  F+ L APL  + ++V+E TF+NGL P +RAE+ C  PKG +  M  
Sbjct: 190 RIQQESSVEEYRNLFDKLVAPLSDIPEKVVEDTFMNGLLPWIRAEVFCGRPKGLAEMMQI 249

Query: 112 --------------------C-----QLARAVRPSGPALKSPAKAIKAAPIRSITLSNPL 164
                               C     Q+  + +P+   + +  +     PIR+ITL N  
Sbjct: 250 AQLVENKEFAQNEAKLNGYSCGKYNPQITNSSKPTTGNITTENRGNTTFPIRTITLRNSN 309

The following BLAST results are available for this feature:

BLAST of CmUC05G080490 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031882.1	7.4e-11	67.92	gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]	[more]
TYJ98385.1	4.5e-08	37.61	retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]	[more]
RVW41094.1	7.7e-08	33.33	hypothetical protein CK203_069772 [Vitis vinifera]	[more]
RVW50870.1	1.0e-07	34.88	Pentatricopeptide repeat-containing protein [Vitis vinifera]	[more]
KAA0066460.1	1.3e-07	33.57	uncharacterized protein E6C27_scaffold21G005610 [Cucumis melo var. makuwa]	[more]

BLAST of CmUC05G080490 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC05G080490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLB5	3.6e-11	67.92	Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3BJ44	2.2e-08	37.61	Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1...	[more]
A0A438E000	3.7e-08	33.33	Retrotrans_gag domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_069...	[more]
A0A438ET29	4.8e-08	34.88	Pentatricopeptide repeat-containing protein OS=Vitis vinifera OX=29760 GN=VvCHDh...	[more]
A0A5A7VH17	6.3e-08	33.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CmUC05G080490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC05G080490.1	CmUC05G080490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane