CmUC04G079940 (gene) Watermelon (USVL531) v1

Overview
NameCmUC04G079940
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Descriptionbifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like
LocationCmU531Chr04: 26110763 .. 26111348 (-)
RNA-Seq ExpressionCmUC04G079940
SyntenyCmUC04G079940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACCCCGCCGAATTACCGAACTCCAACACTGCATGAGATGAACCAGAACGACGACGTTTTTAAGAGCCTCAACTTCCTGACAGTGAAGCCCTATGTGCCACTGCCACTGCCACCTAACTTTCCTTTCATTTTCCACAATGTCATGCATTACATTTAAGAAAATTTAGAACGAATGTATTTAAATTTTATGTTTGATGTATTAATTGATAAGTAAAATTTCACCAAGTTAATTAAATAATTTAATTTTAAATCTTATCAAATCTTGCAAGATCAGAGCATTTTTGTCATAAAAGTTTTTAAAGTAAAAACCGGATTTGAAATTATTTCGAATTTTAATATCATTCTATTTTTTACATACCAAACAAGGAAATTCATTTAAAATCAGTTATTAATTTAAATATTCCAAAAATAAGTTTCAAACATGGCATTAATTCCATTCCTTAAACATTCTTATTTTGTAATCTTTGCTTAATCAGTTTCCTACTCCCATTCACAAGTGGAACCTTCCAAATCTGCCCAACAATACCCACGGTTGGATCAAGGCCATTTGTTCATTATATATATTCACCCTCCCTAACTAA

mRNA sequence

ATGGAGACCCCGCCGAATTACCGAACTCCAACACTGCATGAGATGAACCAGAACGACGACGTTTTTAAGAGCCTCAACTTCCTGACAGTGAAGCCCTATGTGCCACTGCCACTGCCACCTAACTTTCCTTTCATTTTCCACAATTTTCCTACTCCCATTCACAAGTGGAACCTTCCAAATCTGCCCAACAATACCCACGGTTGGATCAAGGCCATTTGTTCATTATATATATTCACCCTCCCTAACTAA

Coding sequence (CDS)

ATGGAGACCCCGCCGAATTACCGAACTCCAACACTGCATGAGATGAACCAGAACGACGACGTTTTTAAGAGCCTCAACTTCCTGACAGTGAAGCCCTATGTGCCACTGCCACTGCCACCTAACTTTCCTTTCATTTTCCACAATTTTCCTACTCCCATTCACAAGTGGAACCTTCCAAATCTGCCCAACAATACCCACGGTTGGATCAAGGCCATTTGTTCATTATATATATTCACCCTCCCTAACTAA

Protein sequence

METPPNYRTPTLHEMNQNDDVFKSLNFLTVKPYVPLPLPPNFPFIFHNFPTPIHKWNLPNLPNNTHGWIKAICSLYIFTLPN
Homology
BLAST of CmUC04G079940 vs. NCBI nr
Match: XP_038895263.1 (LOW QUALITY PROTEIN: bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial [Benincasa hispida])

HSP 1 Score: 70.5 bits (171), Expect = 7.8e-09
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 14  EMNQNDDVFKSLNFLTVKPYVP-------LPLPPNFPFIFHNFPTPIHKWNLPNLPNNTH 71
           E  +ND+V  SLNFL+V+PYVP        P+P +F  +    PTPIHKWNLPNLPNNT 
Sbjct: 74  ESKKNDEVRNSLNFLSVRPYVPPSWASHLNPIPTHFSSL-ARLPTPIHKWNLPNLPNNTE 133

BLAST of CmUC04G079940 vs. NCBI nr
Match: XP_022998051.1 (bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 14  EMNQNDDVFKSLNFLTVKPYVP-------LPLPPNFPFIFHNFPTPIHKWNLPNLPNNTH 71
           E  +ND V  SLNF +V+PYVP        P+P +F  + H  PTPIHKWNLPNLP NT 
Sbjct: 74  ESKKNDKVLDSLNFFSVRPYVPPSWASHLTPIPTHFSSLGH-LPTPIHKWNLPNLPTNTE 133

BLAST of CmUC04G079940 vs. NCBI nr
Match: XP_022949139.1 (bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like [Cucurbita moschata] >KAG7037073.1 putative D-cysteine desulfhydrase 1, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 14  EMNQNDDVFKSLNFLTVKPYVP-------LPLPPNFPFIFHNFPTPIHKWNLPNLPNNTH 71
           E  +ND V  SLNF +VKPYVP        P+P +F  + H  PTPIHKWNLPNLP NT 
Sbjct: 75  ESKKNDKVLDSLNFFSVKPYVPPSWASHLNPIPTHFSSLGH-LPTPIHKWNLPNLPANTE 134

BLAST of CmUC04G079940 vs. NCBI nr
Match: XP_023522011.1 (bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 14  EMNQNDDVFKSLNFLTVKPYVP-------LPLPPNFPFIFHNFPTPIHKWNLPNLPNNTH 71
           E  +ND V  SLNF +VKPYVP        P+P +F  + H  PTPIHKWNLPNLP NT 
Sbjct: 75  ESKKNDKVLDSLNFFSVKPYVPPSWASHLNPIPTHFSSLGH-LPTPIHKWNLPNLPANTE 134

BLAST of CmUC04G079940 vs. NCBI nr
Match: XP_023000776.1 (putative D-cysteine desulfhydrase 1, mitochondrial isoform X1 [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 14 EMNQNDDVFKSLNFLTVKPYVP-------LPLPPNFPFIFHNFPTPIHKWNLPNLPNNTH 71
          +M +ND V +SL FLTV+ YVP         +PP+F  + H F TPIHKWNLPNLP NTH
Sbjct: 12 KMEENDAVPESLEFLTVRRYVPPSWASHLSHIPPHFSSLGH-FTTPIHKWNLPNLPKNTH 71

BLAST of CmUC04G079940 vs. ExPASy Swiss-Prot
Match: Q6ZHE5 (Putative D-cysteine desulfhydrase 1, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0773300 PE=2 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-07
Identity = 27/51 (52.94%), Postives = 32/51 (62.75%), Query Frame = 0

Query: 26  NFLTVKPYVP------LPLPPNFPFIFHNFPTPIHKWNLPNLPNNTHGWIK 71
           +FL+ +PY P      L   P+  F   +FPTPIHKWNLPNLPN T  WIK
Sbjct: 56  SFLSKRPYAPPSWASHLSPAPSQTFSLGHFPTPIHKWNLPNLPNGTEVWIK 106

BLAST of CmUC04G079940 vs. ExPASy Swiss-Prot
Match: F4HYF3 (Bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DCD PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.3e-06
Identity = 26/51 (50.98%), Postives = 30/51 (58.82%), Query Frame = 0

Query: 26 NFLTVKPYVP------LPLPPNFPFIFHNFPTPIHKWNLPNLPNNTHGWIK 71
          +FLT KPY P      L   P+  F   + PTPIH+WNLP LPN T  WIK
Sbjct: 30 DFLTKKPYSPPSWASHLRPLPSHTFSLAHLPTPIHRWNLPGLPNGTELWIK 80

BLAST of CmUC04G079940 vs. ExPASy TrEMBL
Match: A0A6J1K967 (bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111492816 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.4e-09
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 14  EMNQNDDVFKSLNFLTVKPYVP-------LPLPPNFPFIFHNFPTPIHKWNLPNLPNNTH 71
           E  +ND V  SLNF +V+PYVP        P+P +F  + H  PTPIHKWNLPNLP NT 
Sbjct: 74  ESKKNDKVLDSLNFFSVRPYVPPSWASHLTPIPTHFSSLGH-LPTPIHKWNLPNLPTNTE 133

BLAST of CmUC04G079940 vs. ExPASy TrEMBL
Match: A0A6J1KEL6 (putative D-cysteine desulfhydrase 1, mitochondrial isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111495123 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.4e-09
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 14 EMNQNDDVFKSLNFLTVKPYVP-------LPLPPNFPFIFHNFPTPIHKWNLPNLPNNTH 71
          +M +ND V +SL FLTV+ YVP         +PP+F  + H F TPIHKWNLPNLP NTH
Sbjct: 12 KMEENDAVPESLEFLTVRRYVPPSWASHLSHIPPHFSSLGH-FTTPIHKWNLPNLPKNTH 71

BLAST of CmUC04G079940 vs. ExPASy TrEMBL
Match: A0A6J1KGS6 (putative D-cysteine desulfhydrase 1, mitochondrial isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495123 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.4e-09
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 14 EMNQNDDVFKSLNFLTVKPYVP-------LPLPPNFPFIFHNFPTPIHKWNLPNLPNNTH 71
          +M +ND V +SL FLTV+ YVP         +PP+F  + H F TPIHKWNLPNLP NTH
Sbjct: 12 KMEENDAVPESLEFLTVRRYVPPSWASHLSHIPPHFSSLGH-FTTPIHKWNLPNLPKNTH 71

BLAST of CmUC04G079940 vs. ExPASy TrEMBL
Match: A0A6J1GBY4 (bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111452580 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.4e-09
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 14  EMNQNDDVFKSLNFLTVKPYVP-------LPLPPNFPFIFHNFPTPIHKWNLPNLPNNTH 71
           E  +ND V  SLNF +VKPYVP        P+P +F  + H  PTPIHKWNLPNLP NT 
Sbjct: 75  ESKKNDKVLDSLNFFSVKPYVPPSWASHLNPIPTHFSSLGH-LPTPIHKWNLPNLPANTE 134

BLAST of CmUC04G079940 vs. ExPASy TrEMBL
Match: A0A0A0LVC4 (PALP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G031770 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.2e-08
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 0

Query: 14  EMNQNDDVFKSLNFLTVKPYVP-------LPLPPNFPFIFHNFPTPIHKWNLPNLPNNTH 71
           E  Q+D+V  SLNFL+V+PYVP        P+P +   +    PTPIHKWNLPNLPNNT 
Sbjct: 71  ESKQHDEVPNSLNFLSVRPYVPPSWASHLNPIPTHLSSL-ARLPTPIHKWNLPNLPNNTE 130

BLAST of CmUC04G079940 vs. TAIR 10
Match: AT1G48420.1 (D-cysteine desulfhydrase )

HSP 1 Score: 50.8 bits (120), Expect = 5.9e-07
Identity = 26/51 (50.98%), Postives = 30/51 (58.82%), Query Frame = 0

Query: 26 NFLTVKPYVP------LPLPPNFPFIFHNFPTPIHKWNLPNLPNNTHGWIK 71
          +FLT KPY P      L   P+  F   + PTPIH+WNLP LPN T  WIK
Sbjct: 30 DFLTKKPYSPPSWASHLRPLPSHTFSLAHLPTPIHRWNLPGLPNGTELWIK 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038895263.17.8e-0954.69LOW QUALITY PROTEIN: bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1... [more]
XP_022998051.11.3e-0853.13bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminas... [more]
XP_022949139.11.7e-0854.69bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminas... [more]
XP_023522011.11.7e-0854.69bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminas... [more]
XP_023000776.11.7e-0856.25putative D-cysteine desulfhydrase 1, mitochondrial isoform X1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q6ZHE53.4e-0752.94Putative D-cysteine desulfhydrase 1, mitochondrial OS=Oryza sativa subsp. japoni... [more]
F4HYF38.3e-0650.98Bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminas... [more]
Match NameE-valueIdentityDescription
A0A6J1K9676.4e-0953.13bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminas... [more]
A0A6J1KEL68.4e-0956.25putative D-cysteine desulfhydrase 1, mitochondrial isoform X2 OS=Cucurbita maxim... [more]
A0A6J1KGS68.4e-0956.25putative D-cysteine desulfhydrase 1, mitochondrial isoform X1 OS=Cucurbita maxim... [more]
A0A6J1GBY48.4e-0954.69bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminas... [more]
A0A0A0LVC43.2e-0853.13PALP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G031770 PE=3 S... [more]
Match NameE-valueIdentityDescription
AT1G48420.15.9e-0750.98D-cysteine desulfhydrase [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC04G079940.1CmUC04G079940.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process