CmUC04G074830 (gene) Watermelon (USVL531) v1

Overview
NameCmUC04G074830
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr04: 21407371 .. 21407774 (-)
RNA-Seq ExpressionCmUC04G074830
SyntenyCmUC04G074830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGACTTCAAGGTTATTAGATCCTAATCTTATAATGTGATGAGTTGATATATCTTTAGCTGTTATATGGCTAAATAACTGACTTATTTTTAGGTTGTACCTGCGATAGTGAAAGCTGTTGAAAGCAAAGGAGAAGAGATAGAGAAGGCTGTGGAAGAAGTGAAGGGGGCATTGGAACCACTTGAGAAAGAATTGGGTTTGTGGACATTGTAGGCACCGCCGTAGCCTGCTGGTTGCCTGCCATTGAAGAAGCTTTAAGGATTGAGCTGCTAACAACCCACAAATTTCCAAACCTAAGACTATGGAGTGAAGAGCTTTCCAACCACAACGTGGTGAAGGAGCTTCTGCCTAAAAAGGATGAGGTTGTTGCCTTTGTGCAAGCTATTTTCTCCAAGAATTAA

mRNA sequence

ATGGCCGACTTCAAGGTTGTACCTGCGATAGTGAAAGCTGTTGAAAGCAAAGGAGAAGAGATAGAGAAGGCTGTGGAAGAAGTGAAGGGGGCATTGGAACCACTTGAGAAAGAATTGGAGCTTTCCAACCACAACGTGGTGAAGGAGCTTCTGCCTAAAAAGGATGAGGTTGTTGCCTTTGTGCAAGCTATTTTCTCCAAGAATTAA

Coding sequence (CDS)

ATGGCCGACTTCAAGGTTGTACCTGCGATAGTGAAAGCTGTTGAAAGCAAAGGAGAAGAGATAGAGAAGGCTGTGGAAGAAGTGAAGGGGGCATTGGAACCACTTGAGAAAGAATTGGAGCTTTCCAACCACAACGTGGTGAAGGAGCTTCTGCCTAAAAAGGATGAGGTTGTTGCCTTTGTGCAAGCTATTTTCTCCAAGAATTAA

Protein sequence

MADFKVVPAIVKAVESKGEEIEKAVEEVKGALEPLEKELELSNHNVVKELLPKKDEVVAFVQAIFSKN
Homology
BLAST of CmUC04G074830 vs. NCBI nr
Match: XP_008448606.1 (PREDICTED: probable glutathione S-transferase [Cucumis melo] >KAA0045119.1 putative glutathione S-transferase [Cucumis melo var. makuwa] >TYK23618.1 putative glutathione S-transferase [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 5.6e-05
Identity = 45/116 (38.79%), Postives = 53/116 (45.69%), Query Frame = 0

Query: 3   DFKVVPAIVKAVESKGEEIEKAVEEVKGALEPLEKEL----------------------- 62
           D KVV  + K   SKGEE+EKAVEEVK ALEPLEKEL                       
Sbjct: 103 DGKVVSTLGKIRGSKGEEMEKAVEEVKEALEPLEKELKSNKFFGGEKIGFLDIVGILIAF 162

Query: 63  ---------------------------ELSNHNVVKELLPKKDEVVAFVQAIFSKN 69
                                      EL+N+NVVKEL+PKKD++VA  + I  KN
Sbjct: 163 WIPASEEALGIELLTSHKFPNLIHWIEELANNNVVKELIPKKDDLVAHFKTILGKN 218

BLAST of CmUC04G074830 vs. NCBI nr
Match: XP_011653660.1 (glutathione S-transferase U8 [Cucumis sativus] >KGN54314.1 hypothetical protein Csa_017953 [Cucumis sativus])

HSP 1 Score: 53.5 bits (127), Expect = 8.1e-04
Identity = 42/116 (36.21%), Postives = 51/116 (43.97%), Query Frame = 0

Query: 3   DFKVVPAIVKAVESKGEEIEKAVEEVKGALEPLEKEL----------------------- 62
           D KVV A+ K   SKGE IE+AVEE K ALEPLEKEL                       
Sbjct: 103 DGKVVSALGKVCGSKGEVIEEAVEEAKEALEPLEKELKSNKFFGGEKIGFLDIVGILIAF 162

Query: 63  ---------------------------ELSNHNVVKELLPKKDEVVAFVQAIFSKN 69
                                      EL+N NVVKEL+PKKD++V  ++ +  KN
Sbjct: 163 WIPASEEALGIEMLTAHKFPNLIQWIEELANDNVVKELIPKKDDLVTHMKTVLGKN 218

BLAST of CmUC04G074830 vs. ExPASy TrEMBL
Match: A0A5D3DJF9 (Putative glutathione S-transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001320 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-05
Identity = 45/116 (38.79%), Postives = 53/116 (45.69%), Query Frame = 0

Query: 3   DFKVVPAIVKAVESKGEEIEKAVEEVKGALEPLEKEL----------------------- 62
           D KVV  + K   SKGEE+EKAVEEVK ALEPLEKEL                       
Sbjct: 103 DGKVVSTLGKIRGSKGEEMEKAVEEVKEALEPLEKELKSNKFFGGEKIGFLDIVGILIAF 162

Query: 63  ---------------------------ELSNHNVVKELLPKKDEVVAFVQAIFSKN 69
                                      EL+N+NVVKEL+PKKD++VA  + I  KN
Sbjct: 163 WIPASEEALGIELLTSHKFPNLIHWIEELANNNVVKELIPKKDDLVAHFKTILGKN 218

BLAST of CmUC04G074830 vs. ExPASy TrEMBL
Match: A0A1S3BJG8 (probable glutathione S-transferase OS=Cucumis melo OX=3656 GN=LOC103490729 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-05
Identity = 45/116 (38.79%), Postives = 53/116 (45.69%), Query Frame = 0

Query: 3   DFKVVPAIVKAVESKGEEIEKAVEEVKGALEPLEKEL----------------------- 62
           D KVV  + K   SKGEE+EKAVEEVK ALEPLEKEL                       
Sbjct: 103 DGKVVSTLGKIRGSKGEEMEKAVEEVKEALEPLEKELKSNKFFGGEKIGFLDIVGILIAF 162

Query: 63  ---------------------------ELSNHNVVKELLPKKDEVVAFVQAIFSKN 69
                                      EL+N+NVVKEL+PKKD++VA  + I  KN
Sbjct: 163 WIPASEEALGIELLTSHKFPNLIHWIEELANNNVVKELIPKKDDLVAHFKTILGKN 218

BLAST of CmUC04G074830 vs. ExPASy TrEMBL
Match: A0A0A0KZS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303130 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.9e-04
Identity = 42/116 (36.21%), Postives = 51/116 (43.97%), Query Frame = 0

Query: 3   DFKVVPAIVKAVESKGEEIEKAVEEVKGALEPLEKEL----------------------- 62
           D KVV A+ K   SKGE IE+AVEE K ALEPLEKEL                       
Sbjct: 103 DGKVVSALGKVCGSKGEVIEEAVEEAKEALEPLEKELKSNKFFGGEKIGFLDIVGILIAF 162

Query: 63  ---------------------------ELSNHNVVKELLPKKDEVVAFVQAIFSKN 69
                                      EL+N NVVKEL+PKKD++V  ++ +  KN
Sbjct: 163 WIPASEEALGIEMLTAHKFPNLIQWIEELANDNVVKELIPKKDDLVTHMKTVLGKN 218

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008448606.15.6e-0538.79PREDICTED: probable glutathione S-transferase [Cucumis melo] >KAA0045119.1 putat... [more]
XP_011653660.18.1e-0436.21glutathione S-transferase U8 [Cucumis sativus] >KGN54314.1 hypothetical protein ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DJF92.7e-0538.79Putative glutathione S-transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S3BJG82.7e-0538.79probable glutathione S-transferase OS=Cucumis melo OX=3656 GN=LOC103490729 PE=3 ... [more]
A0A0A0KZS03.9e-0436.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303130 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC04G074830.1CmUC04G074830.1mRNA