CmUC04G073240 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC04G073240
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330
Location	CmU531Chr04: 18989135 .. 18989526 (+)
RNA-Seq Expression	CmUC04G073240
Synteny	CmUC04G073240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCCTCTGCTTGTGCCCAATGCCCAACAGTTACCCAGAAACGCCGGTTGTGCTCGATGCCTGACGCTAGACGTTGCCCTTCCTGCTTGTGCCAACGTCGCCTTCTACTTGTGCCAACGCCCTCTGCTTCTTTTCTCCTCCTTCTGCTCCTTCTTTCTCTCTTTGCCTCCCTTCAGGTATTCATCTAACATTTCTCTCCCTTTTCTTTCTTCTTTATAGCATTCTTATGTGGGGATTTGATTTGTATTCTTTGTTCGATGTTTGTAAGGTGTATTCTGCGGAAGTGGAGAAAGATGAGTTGGATGGACCTAAAGATCTTGGTCGACGTAGCAAGGTGAGTACGATTCATTATCTTTCTCGTTATGCTTTGTATAAAGTGGTTTTATAG

mRNA sequence

ATGCCGCCCTCTGCTTGTGCCCAATGCCCAACAGTTACCCAGAAACGCCGGTTGTGCTCGATGCCTGACGCTAGACGTTGCCCTTCCTGCTTGTGCCAACGTCGCCTTCTACTTGTGCCAACGCCCTCTGCTTCTTTTCTCCTCCTTCTGCTCCTTCTTTCTCTCTTTGCCTCCCTTCAGGTGTATTCTGCGGAAGTGGAGAAAGATGAGTTGGATGGACCTAAAGATCTTGGTCGACGTAGCAAGGTGAGTACGATTCATTATCTTTCTCGTTATGCTTTGTATAAAGTGGTTTTATAG

Coding sequence (CDS)

ATGCCGCCCTCTGCTTGTGCCCAATGCCCAACAGTTACCCAGAAACGCCGGTTGTGCTCGATGCCTGACGCTAGACGTTGCCCTTCCTGCTTGTGCCAACGTCGCCTTCTACTTGTGCCAACGCCCTCTGCTTCTTTTCTCCTCCTTCTGCTCCTTCTTTCTCTCTTTGCCTCCCTTCAGGTGTATTCTGCGGAAGTGGAGAAAGATGAGTTGGATGGACCTAAAGATCTTGGTCGACGTAGCAAGGTGAGTACGATTCATTATCTTTCTCGTTATGCTTTGTATAAAGTGGTTTTATAG

Protein sequence

MPPSACAQCPTVTQKRRLCSMPDARRCPSCLCQRRLLLVPTPSASFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKVSTIHYLSRYALYKVVL

Homology

[Close]

BLAST of CmUC04G073240 vs. NCBI nr
Match: XP_038889550.1 (GDT1-like protein 4 [Benincasa hispida])

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 43 SASFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKVS 85
          S+SFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSK+S
Sbjct: 14 SSSFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKIS 55

[Close]

BLAST of CmUC04G073240 vs. NCBI nr
Match: XP_008441858.1 (PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-09
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 43 SASFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKVS 85
          S SFLL LLLLSLFAS+QVYSAE EKDELDGPKDLGRRSK+S
Sbjct: 14 SPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRSKIS 55

[Close]

BLAST of CmUC04G073240 vs. NCBI nr
Match: KAA0049878.1 (putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK07616.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-09
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 43 SASFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKVS 85
          S SFLL LLLLSLFAS+QVYSAE EKDELDGPKDLGRRSK+S
Sbjct: 14 SPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRSKIS 55

[Close]

BLAST of CmUC04G073240 vs. NCBI nr
Match: KGN61261.1 (hypothetical protein Csa_006241 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 43 SASFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKVS 85
          SASFLL LL LSLFAS QVYSAEVEKD+LDGPKDLGRRSK+S
Sbjct: 14 SASFLLFLLFLSLFASHQVYSAEVEKDDLDGPKDLGRRSKMS 55

[Close]

BLAST of CmUC04G073240 vs. NCBI nr
Match: XP_011648996.1 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 43 SASFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKVS 85
          SASFLL LL LSLFAS QVYSAEVEKD+LDGPKDLGRRSK+S
Sbjct: 14 SASFLLFLLFLSLFASHQVYSAEVEKDDLDGPKDLGRRSKMS 55

[Close]

BLAST of CmUC04G073240 vs. ExPASy TrEMBL
Match: A0A5A7U3P6 (GDT1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00130 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-09
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 43 SASFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKVS 85
          S SFLL LLLLSLFAS+QVYSAE EKDELDGPKDLGRRSK+S
Sbjct: 14 SPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRSKIS 55

[Close]

BLAST of CmUC04G073240 vs. ExPASy TrEMBL
Match: A0A1S3B4E3 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucumis melo OX=3656 GN=LOC103485889 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-09
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 43 SASFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKVS 85
          S SFLL LLLLSLFAS+QVYSAE EKDELDGPKDLGRRSK+S
Sbjct: 14 SPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRSKIS 55

[Close]

BLAST of CmUC04G073240 vs. ExPASy TrEMBL
Match: A0A0A0LMQ4 (GDT1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G074220 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.9e-09
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 43 SASFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKVS 85
          SASFLL LL LSLFAS QVYSAEVEKD+LDGPKDLGRRSK+S
Sbjct: 14 SASFLLFLLFLSLFASHQVYSAEVEKDDLDGPKDLGRRSKMS 55

[Close]

BLAST of CmUC04G073240 vs. ExPASy TrEMBL
Match: A0A6J1KA70 (putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxima OX=3661 GN=LOC111492492 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 43 SASFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKVS 85
          S S +LLLLL+SLFAS+QVYSAEVEK+ELDGPKDLGRRSK+S
Sbjct: 14 SPSLILLLLLVSLFASVQVYSAEVEKEELDGPKDLGRRSKIS 55

[Close]

BLAST of CmUC04G073240 vs. ExPASy TrEMBL
Match: A0A6J1EPP7 (putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita moschata OX=3662 GN=LOC111436248 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.2e-07
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 43 SASFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKVS 85
          S S +LLLLL+SLFAS+QV+SAEVEK+ELD PKDLGRRSK+S
Sbjct: 14 SPSLILLLLLVSLFASVQVFSAEVEKEELDVPKDLGRRSKIS 55

The following BLAST results are available for this feature:

BLAST of CmUC04G073240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889550.1	1.3e-10	95.24	GDT1-like protein 4 [Benincasa hispida]	[more]
XP_008441858.1	3.2e-09	88.10	PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing pro...	[more]
KAA0049878.1	3.2e-09	88.10	putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] ...	[more]
KGN61261.1	1.2e-08	88.10	hypothetical protein Csa_006241 [Cucumis sativus]	[more]
XP_011648996.1	1.2e-08	88.10	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23...	[more]

BLAST of CmUC04G073240 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC04G073240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3P6	1.6e-09	88.10	GDT1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G...	[more]
A0A1S3B4E3	1.6e-09	88.10	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23...	[more]
A0A0A0LMQ4	5.9e-09	88.10	GDT1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G074220 PE=3 SV=1	[more]
A0A6J1KA70	1.3e-08	83.33	putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxi...	[more]
A0A6J1EPP7	4.2e-07	78.57	putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita mosc...	[more]

BLAST of CmUC04G073240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC04G073240.1	CmUC04G073240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070588	calcium ion transmembrane transport
biological_process	GO:0032468	Golgi calcium ion homeostasis
biological_process	GO:0032472	Golgi calcium ion transport
biological_process	GO:0071421	manganese ion transmembrane transport
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015085	calcium ion transmembrane transporter activity
molecular_function	GO:0005384	manganese ion transmembrane transporter activity
molecular_function	GO:0008270	zinc ion binding