CmUC04G071560 (gene) Watermelon (USVL531) v1

Overview
NameCmUC04G071560
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr04: 15041865 .. 15042101 (-)
RNA-Seq ExpressionCmUC04G071560
SyntenyCmUC04G071560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGACTTCAATACAACTTCTTTCCCACTGATCTCCTCTACCCTAAACCCTCTTCTTCTTCTTCTTCCTCAGAAGCCATTAATAGGGCAGGTGTCACCTTCAAAACCCCACTAAAAGGCAATAAAGCTGAAGAAGATGATCATGGTGATGAACCCAAGAGCTTGACCATTCAAAAGGCTGATAGATCATCATTGATTCTCAAGCATCAAATCAAGACTTCTTCAACTTTCTAA

mRNA sequence

ATGGCTGGACTTCAATACAACTTCTTTCCCACTGATCTCCTCTACCCTAAACCCTCTTCTTCTTCTTCTTCCTCAGAAGCCATTAATAGGGCAGGTGTCACCTTCAAAACCCCACTAAAAGGCAATAAAGCTGAAGAAGATGATCATGGTGATGAACCCAAGAGCTTGACCATTCAAAAGGCTGATAGATCATCATTGATTCTCAAGCATCAAATCAAGACTTCTTCAACTTTCTAA

Coding sequence (CDS)

ATGGCTGGACTTCAATACAACTTCTTTCCCACTGATCTCCTCTACCCTAAACCCTCTTCTTCTTCTTCTTCCTCAGAAGCCATTAATAGGGCAGGTGTCACCTTCAAAACCCCACTAAAAGGCAATAAAGCTGAAGAAGATGATCATGGTGATGAACCCAAGAGCTTGACCATTCAAAAGGCTGATAGATCATCATTGATTCTCAAGCATCAAATCAAGACTTCTTCAACTTTCTAA

Protein sequence

MAGLQYNFFPTDLLYPKPSSSSSSSEAINRAGVTFKTPLKGNKAEEDDHGDEPKSLTIQKADRSSLILKHQIKTSSTF
Homology
BLAST of CmUC04G071560 vs. NCBI nr
Match: KGN53975.1 (hypothetical protein Csa_018873 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 6.2e-24
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRAGVTFKTPLKGNKAEED--DHGDEPKS--L 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRA VTFKTPL+GNK +++  DHGDEPKS  +
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60

Query: 61 TIQKADRSSLILKHQIKTSST 78
            QK DRS LILKHQIK++S+
Sbjct: 61 ISQKVDRSPLILKHQIKSTSS 81

BLAST of CmUC04G071560 vs. NCBI nr
Match: KAG6603410.1 (hypothetical protein SDJN03_04019, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.5 bits (293), Expect = 5.3e-23
Identity = 61/84 (72.62%), Postives = 68/84 (80.95%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKP-------SSSSSSSEAINRAGVTFKTPLKGNKAEEDDHGDEP 60
          MAGLQYNFFPTDLLYPKP       SSSSSSS+AINRA VTFK P++GN+ EEDDHGD  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQDEEDDHGDGA 60

Query: 61 KSLTIQKADRSSLILKHQIKTSST 78
          KSL+IQK DRS LILKHQ+K  S+
Sbjct: 61 KSLSIQKGDRSPLILKHQVKNDSS 84

BLAST of CmUC04G071560 vs. NCBI nr
Match: ADN34001.1 (hypothetical protein [Cucumis melo subsp. melo] >KAA0063834.1 hypothetical protein E6C27_scaffold827G00560 [Cucumis melo var. makuwa] >TYK28218.1 hypothetical protein E5676_scaffold258G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-22
Identity = 69/82 (84.15%), Postives = 70/82 (85.37%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRAGVTFKTPLKGNKAEED-DHGDEPKS-LTI 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRA VTFKT L+GNK EED DHGDE KS L  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKSRLFS 60

Query: 61 QK-ADRSSLILKHQIK-TSSTF 79
          QK ADRS LILKHQ K TSSTF
Sbjct: 61 QKVADRSPLILKHQSKSTSSTF 82

BLAST of CmUC04G071560 vs. ExPASy TrEMBL
Match: A0A0A0KWJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.0e-24
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRAGVTFKTPLKGNKAEED--DHGDEPKS--L 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRA VTFKTPL+GNK +++  DHGDEPKS  +
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60

Query: 61 TIQKADRSSLILKHQIKTSST 78
            QK DRS LILKHQIK++S+
Sbjct: 61 ISQKVDRSPLILKHQIKSTSS 81

BLAST of CmUC04G071560 vs. ExPASy TrEMBL
Match: A0A5A7V9D3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G00320 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.7e-23
Identity = 69/82 (84.15%), Postives = 70/82 (85.37%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRAGVTFKTPLKGNKAEED-DHGDEPKS-LTI 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRA VTFKT L+GNK EED DHGDE KS L  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKSRLFS 60

Query: 61 QK-ADRSSLILKHQIK-TSSTF 79
          QK ADRS LILKHQ K TSSTF
Sbjct: 61 QKVADRSPLILKHQSKSTSSTF 82

BLAST of CmUC04G071560 vs. ExPASy TrEMBL
Match: E5GC02 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.7e-23
Identity = 69/82 (84.15%), Postives = 70/82 (85.37%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRAGVTFKTPLKGNKAEED-DHGDEPKS-LTI 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRA VTFKT L+GNK EED DHGDE KS L  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKSRLFS 60

Query: 61 QK-ADRSSLILKHQIK-TSSTF 79
          QK ADRS LILKHQ K TSSTF
Sbjct: 61 QKVADRSPLILKHQSKSTSSTF 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN53975.16.2e-2477.78hypothetical protein Csa_018873 [Cucumis sativus][more]
KAG6603410.15.3e-2372.62hypothetical protein SDJN03_04019, partial [Cucurbita argyrosperma subsp. sorori... [more]
ADN34001.12.0e-2284.15hypothetical protein [Cucumis melo subsp. melo] >KAA0063834.1 hypothetical prote... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KWJ23.0e-2477.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1[more]
A0A5A7V9D39.7e-2384.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E5GC029.7e-2384.15Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..59
NoneNo IPR availablePANTHERPTHR38223FAMILY NOT NAMEDcoord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC04G071560.1CmUC04G071560.1mRNA