CmUC04G071460 (gene) Watermelon (USVL531) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTACAATTCTAAACAAGGGGCTTCCAGTATTAGGAGAAATTTCTCGAAGAGCCATGGATCCCATTTTAGCATCCAAGTACGATCGAGTTTCTTGATGAATTTTAATAGGAATAGGTTCCTACCTATAATTTCCACTTGAAATCCATTTCCCATTTTTCAGGCACTTGAAAATGTCTTTTTGATGGCATCCATGGTAATGTTCATTGGAGATGGTAATTTGCCTATAAGGCATTGATTCAACTGGTAATTCACGTCTCCAACAATTTCAGGAATAATTCCTACCGGAACTAAAATATAAGTGAATCCAATAGCTAGTTGTAGTCTTTCTGTTAAAACCAAAATGTAACTGATTTGTATGAACTATAAATACAAAATCAGATATGGAAAATAATTTTTTACAAACTGATACACAAGTTGTAAAGAAAGAAAGAAATAAACTCATTTGCATTCTTCTTTTCCTCTGTGGATGTAAGCAAAGTCTTGGCCGAATCATGTAAAATACTTGTGTCCATCTTCTTCTTGTTCCCTTTCTTTTACTCCGTTCATGCAACATTTTTCTTCTAAGTTTCAACCTCAAATCGCCATTGAAGATCAAAGAAAGAAAAGAGAGAAATTAGAGATTAGAGAGAAGTTCGGTTGAAAGAAGCAAGAAAGAGAGAGAAGGAAAATAATTTATGAATTGAAAAGTAAAACTCAAATTGAATTTTAGAAGAAACAGCCTTCCCACACGTCAGTCAAAATCAGTAGACGTGACCATCTACTAACCATTCTTTCTACCAAACAAGTTTTATCCAATTCTTTCCTTGGGTTCTCTAAATTGGGCCTTAAAATCACAATCTCAGCCCAACAAATTGGTATCAGAGCTTCAAGAAAATCAAGAAAGAAGTTCTTGGAGGTTCAAGAATAAAAAATCTAAGTAACATTGGCAGTAGCAAGGTTTGAAATAAGAAAGTTTGAAGGAAATGGTGATTTTGGCTTGTGGAAACCCAAAATCAAAGCCATTCTTGGACAGTAGAAGGCTGACAAGGCCCTTTTGGACCCATTATCTCTCCTAGAAACATTAACTGCACAAGAAAAGGAAGACATGGAGCTGACAGCCTATGGGATTCTAATTTTGAATCTAAGTAACAGTGTCCTAAGGCAGGTTATAGATCAAGATACAACTCCCACAATATGGACAAAATTGAAAGGTCTCTTTGCCATAAAAGACCTCCCAAATAAGATATTTCTGAGAGAAAAGTTCTTCACATTTAAGATGGATTCGGCTAAAACACTCACTGAAAATTTAGATGAGTTTAAGAAGATAGTAACTGAATTCAGGAGTCTTGGTGAGAAACTAAAGGATGACAATGAAGCTTATGTGCTATTGAATTCCCTTCTAAATGCATACAAAGAGGTAAAACTTTAAAGTATGGTAGAGAGTCAATTACCACTGATGTCATAATTTCAGCTCTTAAAATCAAAGAATTGGAGCTTCATGCTACCAAGAAAGAGCAGCCTAGTGCAGAAGGGCTATTTGTCAAGAGCAAGGACAAATCGAATTTGTCTAAAGGTGGGAAACAACAGTCTAATGAGGAATATAAGCCTAAGACAAAGCTAAGATGCAACTATTGCAAGAAGAGGGGCCACCTCATGAGAGATTGCTACAGCTTGAAGAGGAAAAAATCAGGAAAAAGAGAAAAAGGCTAAGGGGAAGCAGCCTGAAGCTTCTATAGTTGAAGGCTTCTATTTCTACTCCGATGCACTAACTTCTACAAGAGACAAAGCTAACCTAATAAGCCCTTTTGGGAAGCATGATTGA ATGGCTACAATTCTAAACAAGGGGCTTCCAGTATTAGGAGAAATTTCTCGAAGAGCCATGGATCCCATTTTAGCATCCAAGTACGATCGAAAGGCTGACAAGGCCCTTTTGGACCCATTATCTCTCCTAGAAACATTAACTGCACAAGAAAAGGAAGACATGGAGCTGACAGCCTATGGGATTCTAATTTTGAATCTAAGTAACAGTGTCCTAAGGCAGGTTATAGATCAAGATACAACTCCCACAATATGGACAAAATTGAAAGGTCTCTTTGCCATAAAAGACCTCCCAAATAAGATATTTCTGAGAGAAAAGTTCTTCACATTTAAGATGGATTCGGCTAAAACACTCACTGAAAATTTAGATGAGTTTAAGAAGATAGTAACTGAATTCAGGAGTCTTGGTGAGAAACTAAAGGATGACAATGAAGCTTATGTGCTATTGAATTCCCTTCTAAATGCATACAAAGAGAAAGAGCAGCCTAGTGCAGAAGGGCTATTTGTCAAGAGCAAGGACAAATCGAATTTGTCTAAAGGTGGGAAACAACAAGGAAAAAATCAGGAAAAAGAGAAAAAGGCTAAGGGGAAGCAGCCTGAAGCTTCTATAGTTGAAGGCTTCTATTTCTACTCCGATGCACTAACTTCTACAAGAGACAAAGCTAACCTAATAAGCCCTTTTGGGAAGCATGATTGA ATGGCTACAATTCTAAACAAGGGGCTTCCAGTATTAGGAGAAATTTCTCGAAGAGCCATGGATCCCATTTTAGCATCCAAGTACGATCGAAAGGCTGACAAGGCCCTTTTGGACCCATTATCTCTCCTAGAAACATTAACTGCACAAGAAAAGGAAGACATGGAGCTGACAGCCTATGGGATTCTAATTTTGAATCTAAGTAACAGTGTCCTAAGGCAGGTTATAGATCAAGATACAACTCCCACAATATGGACAAAATTGAAAGGTCTCTTTGCCATAAAAGACCTCCCAAATAAGATATTTCTGAGAGAAAAGTTCTTCACATTTAAGATGGATTCGGCTAAAACACTCACTGAAAATTTAGATGAGTTTAAGAAGATAGTAACTGAATTCAGGAGTCTTGGTGAGAAACTAAAGGATGACAATGAAGCTTATGTGCTATTGAATTCCCTTCTAAATGCATACAAAGAGAAAGAGCAGCCTAGTGCAGAAGGGCTATTTGTCAAGAGCAAGGACAAATCGAATTTGTCTAAAGGTGGGAAACAACAAGGAAAAAATCAGGAAAAAGAGAAAAAGGCTAAGGGGAAGCAGCCTGAAGCTTCTATAGTTGAAGGCTTCTATTTCTACTCCGATGCACTAACTTCTACAAGAGACAAAGCTAACCTAATAAGCCCTTTTGGGAAGCATGATTGA MATILNKGLPVLGEISRRAMDPILASKYDRKADKALLDPLSLLETLTAQEKEDMELTAYGILILNLSNSVLRQVIDQDTTPTIWTKLKGLFAIKDLPNKIFLREKFFTFKMDSAKTLTENLDEFKKIVTEFRSLGEKLKDDNEAYVLLNSLLNAYKEKEQPSAEGLFVKSKDKSNLSKGGKQQGKNQEKEKKAKGKQPEASIVEGFYFYSDALTSTRDKANLISPFGKHD Homology
BLAST of CmUC04G071460 vs. NCBI nr
Match: TYK02285.1 (putative gag protein [Cucumis melo var. makuwa]) HSP 1 Score: 151.0 bits (380), Expect = 1.3e-32 Identity = 86/218 (39.45%), Postives = 140/218 (64.22%), Query Frame = 0
BLAST of CmUC04G071460 vs. NCBI nr
Match: XP_038896323.1 (uncharacterized protein LOC120084587 [Benincasa hispida]) HSP 1 Score: 141.0 bits (354), Expect = 1.3e-29 Identity = 76/128 (59.38%), Postives = 91/128 (71.09%), Query Frame = 0
BLAST of CmUC04G071460 vs. NCBI nr
Match: XP_038880370.1 (uncharacterized protein LOC120072018 [Benincasa hispida]) HSP 1 Score: 139.4 bits (350), Expect = 3.8e-29 Identity = 62/123 (50.41%), Postives = 97/123 (78.86%), Query Frame = 0
BLAST of CmUC04G071460 vs. NCBI nr
Match: XP_038885928.1 (uncharacterized protein LOC120076236 [Benincasa hispida]) HSP 1 Score: 136.7 bits (343), Expect = 2.5e-28 Identity = 85/232 (36.64%), Postives = 126/232 (54.31%), Query Frame = 0
BLAST of CmUC04G071460 vs. NCBI nr
Match: XP_038887098.1 (uncharacterized protein LOC120077280 [Benincasa hispida]) HSP 1 Score: 136.7 bits (343), Expect = 2.5e-28 Identity = 65/128 (50.78%), Postives = 95/128 (74.22%), Query Frame = 0
BLAST of CmUC04G071460 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 2.0e-12 Identity = 47/163 (28.83%), Postives = 89/163 (54.60%), Query Frame = 0
BLAST of CmUC04G071460 vs. ExPASy TrEMBL
Match: A0A5D3BSZ6 (Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00930 PE=4 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 6.1e-33 Identity = 86/218 (39.45%), Postives = 140/218 (64.22%), Query Frame = 0
BLAST of CmUC04G071460 vs. ExPASy TrEMBL
Match: A0A5A7V269 (Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004590 PE=4 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 3.8e-27 Identity = 64/143 (44.76%), Postives = 103/143 (72.03%), Query Frame = 0
BLAST of CmUC04G071460 vs. ExPASy TrEMBL
Match: A0A5A7TAZ3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold768G00070 PE=4 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 1.9e-26 Identity = 66/128 (51.56%), Postives = 94/128 (73.44%), Query Frame = 0
BLAST of CmUC04G071460 vs. ExPASy TrEMBL
Match: A0A2P5FE65 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_080180 PE=4 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 1.2e-25 Identity = 63/128 (49.22%), Postives = 91/128 (71.09%), Query Frame = 0
BLAST of CmUC04G071460 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 8.0e-25 Identity = 60/122 (49.18%), Postives = 86/122 (70.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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