CmUC04G071460 (gene) Watermelon (USVL531) v1

Overview
NameCmUC04G071460
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCmU531Chr04: 14706658 .. 14708462 (+)
RNA-Seq ExpressionCmUC04G071460
SyntenyCmUC04G071460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACAATTCTAAACAAGGGGCTTCCAGTATTAGGAGAAATTTCTCGAAGAGCCATGGATCCCATTTTAGCATCCAAGTACGATCGAGTTTCTTGATGAATTTTAATAGGAATAGGTTCCTACCTATAATTTCCACTTGAAATCCATTTCCCATTTTTCAGGCACTTGAAAATGTCTTTTTGATGGCATCCATGGTAATGTTCATTGGAGATGGTAATTTGCCTATAAGGCATTGATTCAACTGGTAATTCACGTCTCCAACAATTTCAGGAATAATTCCTACCGGAACTAAAATATAAGTGAATCCAATAGCTAGTTGTAGTCTTTCTGTTAAAACCAAAATGTAACTGATTTGTATGAACTATAAATACAAAATCAGATATGGAAAATAATTTTTTACAAACTGATACACAAGTTGTAAAGAAAGAAAGAAATAAACTCATTTGCATTCTTCTTTTCCTCTGTGGATGTAAGCAAAGTCTTGGCCGAATCATGTAAAATACTTGTGTCCATCTTCTTCTTGTTCCCTTTCTTTTACTCCGTTCATGCAACATTTTTCTTCTAAGTTTCAACCTCAAATCGCCATTGAAGATCAAAGAAAGAAAAGAGAGAAATTAGAGATTAGAGAGAAGTTCGGTTGAAAGAAGCAAGAAAGAGAGAGAAGGAAAATAATTTATGAATTGAAAAGTAAAACTCAAATTGAATTTTAGAAGAAACAGCCTTCCCACACGTCAGTCAAAATCAGTAGACGTGACCATCTACTAACCATTCTTTCTACCAAACAAGTTTTATCCAATTCTTTCCTTGGGTTCTCTAAATTGGGCCTTAAAATCACAATCTCAGCCCAACAAATTGGTATCAGAGCTTCAAGAAAATCAAGAAAGAAGTTCTTGGAGGTTCAAGAATAAAAAATCTAAGTAACATTGGCAGTAGCAAGGTTTGAAATAAGAAAGTTTGAAGGAAATGGTGATTTTGGCTTGTGGAAACCCAAAATCAAAGCCATTCTTGGACAGTAGAAGGCTGACAAGGCCCTTTTGGACCCATTATCTCTCCTAGAAACATTAACTGCACAAGAAAAGGAAGACATGGAGCTGACAGCCTATGGGATTCTAATTTTGAATCTAAGTAACAGTGTCCTAAGGCAGGTTATAGATCAAGATACAACTCCCACAATATGGACAAAATTGAAAGGTCTCTTTGCCATAAAAGACCTCCCAAATAAGATATTTCTGAGAGAAAAGTTCTTCACATTTAAGATGGATTCGGCTAAAACACTCACTGAAAATTTAGATGAGTTTAAGAAGATAGTAACTGAATTCAGGAGTCTTGGTGAGAAACTAAAGGATGACAATGAAGCTTATGTGCTATTGAATTCCCTTCTAAATGCATACAAAGAGGTAAAACTTTAAAGTATGGTAGAGAGTCAATTACCACTGATGTCATAATTTCAGCTCTTAAAATCAAAGAATTGGAGCTTCATGCTACCAAGAAAGAGCAGCCTAGTGCAGAAGGGCTATTTGTCAAGAGCAAGGACAAATCGAATTTGTCTAAAGGTGGGAAACAACAGTCTAATGAGGAATATAAGCCTAAGACAAAGCTAAGATGCAACTATTGCAAGAAGAGGGGCCACCTCATGAGAGATTGCTACAGCTTGAAGAGGAAAAAATCAGGAAAAAGAGAAAAAGGCTAAGGGGAAGCAGCCTGAAGCTTCTATAGTTGAAGGCTTCTATTTCTACTCCGATGCACTAACTTCTACAAGAGACAAAGCTAACCTAATAAGCCCTTTTGGGAAGCATGATTGA

mRNA sequence

ATGGCTACAATTCTAAACAAGGGGCTTCCAGTATTAGGAGAAATTTCTCGAAGAGCCATGGATCCCATTTTAGCATCCAAGTACGATCGAAAGGCTGACAAGGCCCTTTTGGACCCATTATCTCTCCTAGAAACATTAACTGCACAAGAAAAGGAAGACATGGAGCTGACAGCCTATGGGATTCTAATTTTGAATCTAAGTAACAGTGTCCTAAGGCAGGTTATAGATCAAGATACAACTCCCACAATATGGACAAAATTGAAAGGTCTCTTTGCCATAAAAGACCTCCCAAATAAGATATTTCTGAGAGAAAAGTTCTTCACATTTAAGATGGATTCGGCTAAAACACTCACTGAAAATTTAGATGAGTTTAAGAAGATAGTAACTGAATTCAGGAGTCTTGGTGAGAAACTAAAGGATGACAATGAAGCTTATGTGCTATTGAATTCCCTTCTAAATGCATACAAAGAGAAAGAGCAGCCTAGTGCAGAAGGGCTATTTGTCAAGAGCAAGGACAAATCGAATTTGTCTAAAGGTGGGAAACAACAAGGAAAAAATCAGGAAAAAGAGAAAAAGGCTAAGGGGAAGCAGCCTGAAGCTTCTATAGTTGAAGGCTTCTATTTCTACTCCGATGCACTAACTTCTACAAGAGACAAAGCTAACCTAATAAGCCCTTTTGGGAAGCATGATTGA

Coding sequence (CDS)

ATGGCTACAATTCTAAACAAGGGGCTTCCAGTATTAGGAGAAATTTCTCGAAGAGCCATGGATCCCATTTTAGCATCCAAGTACGATCGAAAGGCTGACAAGGCCCTTTTGGACCCATTATCTCTCCTAGAAACATTAACTGCACAAGAAAAGGAAGACATGGAGCTGACAGCCTATGGGATTCTAATTTTGAATCTAAGTAACAGTGTCCTAAGGCAGGTTATAGATCAAGATACAACTCCCACAATATGGACAAAATTGAAAGGTCTCTTTGCCATAAAAGACCTCCCAAATAAGATATTTCTGAGAGAAAAGTTCTTCACATTTAAGATGGATTCGGCTAAAACACTCACTGAAAATTTAGATGAGTTTAAGAAGATAGTAACTGAATTCAGGAGTCTTGGTGAGAAACTAAAGGATGACAATGAAGCTTATGTGCTATTGAATTCCCTTCTAAATGCATACAAAGAGAAAGAGCAGCCTAGTGCAGAAGGGCTATTTGTCAAGAGCAAGGACAAATCGAATTTGTCTAAAGGTGGGAAACAACAAGGAAAAAATCAGGAAAAAGAGAAAAAGGCTAAGGGGAAGCAGCCTGAAGCTTCTATAGTTGAAGGCTTCTATTTCTACTCCGATGCACTAACTTCTACAAGAGACAAAGCTAACCTAATAAGCCCTTTTGGGAAGCATGATTGA

Protein sequence

MATILNKGLPVLGEISRRAMDPILASKYDRKADKALLDPLSLLETLTAQEKEDMELTAYGILILNLSNSVLRQVIDQDTTPTIWTKLKGLFAIKDLPNKIFLREKFFTFKMDSAKTLTENLDEFKKIVTEFRSLGEKLKDDNEAYVLLNSLLNAYKEKEQPSAEGLFVKSKDKSNLSKGGKQQGKNQEKEKKAKGKQPEASIVEGFYFYSDALTSTRDKANLISPFGKHD
Homology
BLAST of CmUC04G071460 vs. NCBI nr
Match: TYK02285.1 (putative gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 1.3e-32
Identity = 86/218 (39.45%), Postives = 140/218 (64.22%), Query Frame = 0

Query: 15  ISRRAMDPILASKYDRKADKALLDPLSLLETLTAQEKEDMELTAYGILILNLSNSVLRQV 74
           + R+   P+L +K   K  KA++DP  L +T+T ++ E+ME   YG ++L LS++VL ++
Sbjct: 8   VGRQRKRPLLDNK---KTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNVLTEI 67

Query: 75  IDQDTTPTIWTKLKGLFAIKDLPNKIFLREKFFTFKMDSAKTLTENLDEFKKIVTEFRSL 134
           ID++TT  IW KL+ ++  +DL N+ +L EKFFT+ MDS ++LT+ L EFKK+ TEF+SL
Sbjct: 68  IDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTEFQSL 127

Query: 135 GEKLKDDNEAYVLLNSLLNAYKE----------KEQPSAEGLFVKSKDKSNLSKGGKQQG 194
           G+++ ++NE + LLNSL + Y+E          K+Q S EG F K + K++       + 
Sbjct: 128 GDQIDEENETFFLLNSLSDEYRETTELEILAQKKDQNSGEGSFSKGRSKND------WKD 187

Query: 195 KNQEKEKKAKGKQPEASIV-EGFYFYSDALTSTRDKAN 222
            N  K+KK K  +PEA +  +G + + DALT++++  N
Sbjct: 188 DNNRKDKKVKEPKPEALVAKQGSFIFVDALTTSQNTYN 216

BLAST of CmUC04G071460 vs. NCBI nr
Match: XP_038896323.1 (uncharacterized protein LOC120084587 [Benincasa hispida])

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-29
Identity = 76/128 (59.38%), Postives = 91/128 (71.09%), Query Frame = 0

Query: 30  RKADKALLDPLSLLETLTAQEKEDMELTAYGILILNLSNSVLRQVIDQDTTPTIWTKLKG 89
           +KA +ALL+P +L  T+TAQEKED EL  Y                DQ+T   IWTKL+ 
Sbjct: 31  QKAHRALLNPSTLSATMTAQEKEDWELATY----------------DQETAYRIWTKLEE 90

Query: 90  LFAIKDLPNKIFLREKFFTFKMDSAKTLTENLDEFKKIVTEFRSLGEKLKDDNEAYVLLN 149
           L+A KDLP+K++L EKFFTFKMDS+KTLT N DEFKKIV EF++LGEKL D NEAYVL N
Sbjct: 91  LYATKDLPSKMYLSEKFFTFKMDSSKTLTNNFDEFKKIVAEFKTLGEKLSDKNEAYVLPN 142

Query: 150 SLLNAYKE 158
           SL  +YKE
Sbjct: 151 SLPESYKE 142

BLAST of CmUC04G071460 vs. NCBI nr
Match: XP_038880370.1 (uncharacterized protein LOC120072018 [Benincasa hispida])

HSP 1 Score: 139.4 bits (350), Expect = 3.8e-29
Identity = 62/123 (50.41%), Postives = 97/123 (78.86%), Query Frame = 0

Query: 35  ALLDPLSLLETLTAQEKEDMELTAYGILILNLSNSVLRQVIDQDTTPTIWTKLKGLFAIK 94
           A+ DP    ETL+  +KE +EL AYG +ILN+++S+LRQ++DQ T   +W KL  ++  K
Sbjct: 36  AITDPTKYPETLSEADKETIELNAYGTIILNVTDSILRQIVDQPTAYALWNKLNEIYLNK 95

Query: 95  DLPNKIFLREKFFTFKMDSAKTLTENLDEFKKIVTEFRSLGEKLKDDNEAYVLLNSLLNA 154
           DLPNK F RE+FFT+K+D+AK+LT+NL+EFK++ +EFRS+ + ++++NEA++LLNSL  +
Sbjct: 96  DLPNKAFFRERFFTYKIDAAKSLTDNLNEFKRLSSEFRSIRDNIREENEAFILLNSLPES 155

Query: 155 YKE 158
           +K+
Sbjct: 156 FKD 158

BLAST of CmUC04G071460 vs. NCBI nr
Match: XP_038885928.1 (uncharacterized protein LOC120076236 [Benincasa hispida])

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-28
Identity = 85/232 (36.64%), Postives = 126/232 (54.31%), Query Frame = 0

Query: 30  RKADKALLDPLSLLETLTAQEKEDMELTAYGILILNLSNSVLRQVIDQDTTPTIWTKLKG 89
           +KA  A+ DP    + L   EKE +E  AYG ++LN+ +SVLRQ++D+ T   +W KL  
Sbjct: 31  QKALLAITDPAKYPKILFKAEKETIESNAYGTIVLNVIDSVLRQIVDRPTAYALWNKLND 90

Query: 90  LFAIKDLPNKIFLREKFFTFKMDSAKTLTENLDEFKKIVTEFRSLGEKLKDDNEAYVLLN 149
           ++  KDLPNK FLRE+FFT+KMD AK+LT+NL+EFK + ++FRS+G+ + ++NEA++LLN
Sbjct: 91  IYLNKDLPNKAFLRERFFTYKMDPAKSLTDNLNEFKSLSSDFRSIGDNIGEENEAFILLN 150

Query: 150 SLLNAYKE--------------------------------KEQPSAEGLFVKSKDKS--- 209
           SL   +K+                                K+QP  EG F K  +K+   
Sbjct: 151 SLPETFKDVKTALKYGRERITTYAIISAVSVKELELQMTKKDQPRGEGFFPKGNNKTMGR 210

Query: 210 ----------NLSKGGKQQGKNQEKEKKAKGKQPEASIVEGFYFYSDALTST 217
                     +  K      K +  ++   GKQ EA++ E    YSDAL +T
Sbjct: 211 ANRTMEMCIRDSMKKDCYALKRKLNQQNKGGKQTEAAVGENSLVYSDALAAT 262

BLAST of CmUC04G071460 vs. NCBI nr
Match: XP_038887098.1 (uncharacterized protein LOC120077280 [Benincasa hispida])

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-28
Identity = 65/128 (50.78%), Postives = 95/128 (74.22%), Query Frame = 0

Query: 30  RKADKALLDPLSLLETLTAQEKEDMELTAYGILILNLSNSVLRQVIDQDTTPTIWTKLKG 89
           +KA  A+ DP    ETL+  EKE +E  AYG +ILN+++SVLRQ++DQ T   +W KL  
Sbjct: 31  QKALLAITDPSKYPETLSEAEKETIESNAYGTIILNVTDSVLRQIMDQPTVYALWNKLNE 90

Query: 90  LFAIKDLPNKIFLREKFFTFKMDSAKTLTENLDEFKKIVTEFRSLGEKLKDDNEAYVLLN 149
           ++  KD PNK FLRE+FFT+KMD  K+LT+NL+EFK++ +EFRS+G+ + ++NEA++L N
Sbjct: 91  IYLNKDFPNKNFLRERFFTYKMDPTKSLTDNLNEFKRLSSEFRSIGDNIGEENEAFILFN 150

Query: 150 SLLNAYKE 158
           SL   +K+
Sbjct: 151 SLPETFKD 158

BLAST of CmUC04G071460 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-12
Identity = 47/163 (28.83%), Postives = 89/163 (54.60%), Query Frame = 0

Query: 44  ETLTAQEKEDMELTAYGILILNLSNSVLRQVIDQDTTPTIWTKLKGLFAIKDLPNKIFLR 103
           +T+ A++  D++  A   + L+LS+ V+  +ID+DT   IWT+L+ L+  K L NK++L+
Sbjct: 45  DTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLK 104

Query: 104 EKFFTFKMDSAKTLTENLDEFKKIVTEFRSLGEKLKDDNEAYVLLNSLLNAYKEKEQPSA 163
           ++ +   M        +L+ F  ++T+  +LG K++++++A +LLNSL ++Y        
Sbjct: 105 KQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTIL 164

Query: 164 EG-LFVKSKDKSNLSKGGKQQGKNQEKEKKAKGKQPEASIVEG 206
            G   ++ KD ++            EK +K    Q +A I EG
Sbjct: 165 HGKTTIELKDVTSAL-------LLNEKMRKKPENQGQALITEG 200

BLAST of CmUC04G071460 vs. ExPASy TrEMBL
Match: A0A5D3BSZ6 (Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00930 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 6.1e-33
Identity = 86/218 (39.45%), Postives = 140/218 (64.22%), Query Frame = 0

Query: 15  ISRRAMDPILASKYDRKADKALLDPLSLLETLTAQEKEDMELTAYGILILNLSNSVLRQV 74
           + R+   P+L +K   K  KA++DP  L +T+T ++ E+ME   YG ++L LS++VL ++
Sbjct: 8   VGRQRKRPLLDNK---KTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNVLTEI 67

Query: 75  IDQDTTPTIWTKLKGLFAIKDLPNKIFLREKFFTFKMDSAKTLTENLDEFKKIVTEFRSL 134
           ID++TT  IW KL+ ++  +DL N+ +L EKFFT+ MDS ++LT+ L EFKK+ TEF+SL
Sbjct: 68  IDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTEFQSL 127

Query: 135 GEKLKDDNEAYVLLNSLLNAYKE----------KEQPSAEGLFVKSKDKSNLSKGGKQQG 194
           G+++ ++NE + LLNSL + Y+E          K+Q S EG F K + K++       + 
Sbjct: 128 GDQIDEENETFFLLNSLSDEYRETTELEILAQKKDQNSGEGSFSKGRSKND------WKD 187

Query: 195 KNQEKEKKAKGKQPEASIV-EGFYFYSDALTSTRDKAN 222
            N  K+KK K  +PEA +  +G + + DALT++++  N
Sbjct: 188 DNNRKDKKVKEPKPEALVAKQGSFIFVDALTTSQNTYN 216

BLAST of CmUC04G071460 vs. ExPASy TrEMBL
Match: A0A5A7V269 (Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004590 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.8e-27
Identity = 64/143 (44.76%), Postives = 103/143 (72.03%), Query Frame = 0

Query: 15  ISRRAMDPILASKYDRKADKALLDPLSLLETLTAQEKEDMELTAYGILILNLSNSVLRQV 74
           + R+   P+L +K   K  KA++DP  L +T+T ++ E+ME   YG ++L LS++VL ++
Sbjct: 8   VGRQRKRPLLDNK---KTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNVLTEI 67

Query: 75  IDQDTTPTIWTKLKGLFAIKDLPNKIFLREKFFTFKMDSAKTLTENLDEFKKIVTEFRSL 134
           ID++TT  IW KL+ ++  +DL N+ +L EKFFT+ MDS ++LT+ L EFKK+ TEF+SL
Sbjct: 68  IDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTEFQSL 127

Query: 135 GEKLKDDNEAYVLLNSLLNAYKE 158
           G+++ ++NE + LLNSL + Y+E
Sbjct: 128 GDQIDEENETFFLLNSLSDEYRE 147

BLAST of CmUC04G071460 vs. ExPASy TrEMBL
Match: A0A5A7TAZ3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold768G00070 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.9e-26
Identity = 66/128 (51.56%), Postives = 94/128 (73.44%), Query Frame = 0

Query: 30  RKADKALLDPLSLLETLTAQEKEDMELTAYGILILNLSNSVLRQVIDQDTTPTIWTKLKG 89
           + A K + DP +L  T+   +K+ ME T Y ILILN++++VLRQVI+++TT  I  KL  
Sbjct: 31  QNALKDIQDPKNLPATMNEVDKQSMEETTYEILILNITDNVLRQVINENTTYEICEKLTA 90

Query: 90  LFAIKDLPNKIFLREKFFTFKMDSAKTLTENLDEFKKIVTEFRSLGEKLKDDNEAYVLLN 149
           L+  KDLP+K+++REK F+FKM+ +KTL ENLDEFKK+  EF  LGEKL+ ++EA + +N
Sbjct: 91  LYDKKDLPSKLYMREKLFSFKMNQSKTLNENLDEFKKLTNEFNQLGEKLRAESEAAIFIN 150

Query: 150 SLLNAYKE 158
           SL + YKE
Sbjct: 151 SLHDTYKE 158

BLAST of CmUC04G071460 vs. ExPASy TrEMBL
Match: A0A2P5FE65 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_080180 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-25
Identity = 63/128 (49.22%), Postives = 91/128 (71.09%), Query Frame = 0

Query: 30  RKADKALLDPLSLLETLTAQEKEDMELTAYGILILNLSNSVLRQVIDQDTTPTIWTKLKG 89
           +K  KAL D   L ET+   EKE++  TAY +LILNL+++VLRQV +QDT   +W+KL  
Sbjct: 31  QKCAKALGDVSGLPETMKPSEKEELLETAYSLLILNLADNVLRQVDEQDTAAKVWSKLDS 90

Query: 90  LFAIKDLPNKIFLREKFFTFKMDSAKTLTENLDEFKKIVTEFRSLGEKLKDDNEAYVLLN 149
           L+  K L NKI+L+E+ F FKMDS K+L +NLD+FK+I     ++ EK+ D+N+A ++LN
Sbjct: 91  LYLTKTLSNKIYLKEQLFGFKMDSTKSLEDNLDDFKRITVSLANIDEKINDENQAIIILN 150

Query: 150 SLLNAYKE 158
           SL  +YK+
Sbjct: 151 SLPESYKD 158

BLAST of CmUC04G071460 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 8.0e-25
Identity = 60/122 (49.18%), Postives = 86/122 (70.49%), Query Frame = 0

Query: 36  LLDPLSLLETLTAQEKEDMELTAYGILILNLSNSVLRQVIDQDTTPTIWTKLKGLFAIKD 95
           +LD   L + +T  EK DM+  AY  ++L LS+ VLR V +  TT  +W KL+ L+  K 
Sbjct: 36  ILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKS 95

Query: 96  LPNKIFLREKFFTFKMDSAKTLTENLDEFKKIVTEFRSLGEKLKDDNEAYVLLNSLLNAY 155
           LPNKI+++EKFF +KMD +K+L ENLDEF+KIV +  ++GEK+ D+N+A +LLNSL   Y
Sbjct: 96  LPNKIYIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETY 155

Query: 156 KE 158
           +E
Sbjct: 156 RE 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK02285.11.3e-3239.45putative gag protein [Cucumis melo var. makuwa][more]
XP_038896323.11.3e-2959.38uncharacterized protein LOC120084587 [Benincasa hispida][more]
XP_038880370.13.8e-2950.41uncharacterized protein LOC120072018 [Benincasa hispida][more]
XP_038885928.12.5e-2836.64uncharacterized protein LOC120076236 [Benincasa hispida][more]
XP_038887098.12.5e-2850.78uncharacterized protein LOC120077280 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
P109782.0e-1228.83Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A5D3BSZ66.1e-3339.45Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G... [more]
A0A5A7V2693.8e-2744.76Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G... [more]
A0A5A7TAZ31.9e-2651.56Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A2P5FE651.2e-2549.22Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_080... [more]
A0A5D3DNU18.0e-2549.18Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 55..157
e-value: 6.1E-23
score: 81.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..198
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..198
NoneNo IPR availablePANTHERPTHR34676:SF12ZINC FINGER, CCHC-TYPE, RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN PROTEIN-RELATEDcoord: 50..157
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 50..157

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC04G071460.1CmUC04G071460.1mRNA