CmUC04G069790 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC04G069790
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	RNA polymerase II transcriptional coactivator KIWI-like
Location	CmU531Chr04: 6388368 .. 6388723 (-)
RNA-Seq Expression	CmUC04G069790
Synteny	CmUC04G069790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCGAGAGGAAAGCGAAAGGACGAGGAAGATCACGCATCCGAGGGAGATGTTCCTCCTTCCAAGACATTCAAGAAAGATTCTGACGATACCGATGAAATCGTAGTCTGCGAGGTCTTTCACTTCCTTCCTCCTTCTGTTTTTACCGCCTGTACCTTTCTTTCAACTCTTCAATTCCCTTTTTCTTACTGTAGATTTCAAAGAACCGTAGGGTTATGGTCAGGAACTGGCAAGGAAAGATTGTCGTCGATATTCGTGAGTTTTATGTCAAAGATGGCAAGCAGATGCCTGGAAAGAAAGGTTTATCCCATCATCCTCTTCTTCTTCTTCTCTCTCTATCTCGCAATGGATGA

mRNA sequence

ATGTCTGCGAGAGGAAAGCGAAAGGACGAGGAAGATCACGCATCCGAGGGAGATGTTCCTCCTTCCAAGACATTCAAGAAAGATTCTGACGATACCGATGAAATCGTAGTCTGCGAGATTTCAAAGAACCGTAGGGTTATGGTCAGGAACTGGCAAGGAAAGATTGTCGTCGATATTCGTGAGTTTTATGTCAAAGATGGCAAGCAGATGCCTGGAAAGAAAGGTTTATCCCATCATCCTCTTCTTCTTCTTCTCTCTCTATCTCGCAATGGATGA

Coding sequence (CDS)

ATGTCTGCGAGAGGAAAGCGAAAGGACGAGGAAGATCACGCATCCGAGGGAGATGTTCCTCCTTCCAAGACATTCAAGAAAGATTCTGACGATACCGATGAAATCGTAGTCTGCGAGATTTCAAAGAACCGTAGGGTTATGGTCAGGAACTGGCAAGGAAAGATTGTCGTCGATATTCGTGAGTTTTATGTCAAAGATGGCAAGCAGATGCCTGGAAAGAAAGGTTTATCCCATCATCCTCTTCTTCTTCTTCTCTCTCTATCTCGCAATGGATGA

Protein sequence

MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLSHHPLLLLLSLSRNG

Homology

[Close]

BLAST of CmUC04G069790 vs. NCBI nr
Match: KAG7033606.1 (RNA polymerase II transcriptional coactivator KIWI [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155.6 bits (392), Expect = 2.0e-34
Identity = 76/88 (86.36%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 1  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKD+EDH SEGD PP KTF+KDSD+TDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGLSHHPLLLLLSLS 89
          EFYVKDGKQMPGKKG SHH LL  L  S
Sbjct: 61 EFYVKDGKQMPGKKGSSHHRLLFSLRTS 88

[Close]

BLAST of CmUC04G069790 vs. NCBI nr
Match: XP_038881105.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Benincasa hispida])

HSP 1 Score: 154.1 bits (388), Expect = 5.9e-34
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKDEEDHASEGD PPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDEEDHASEGDAPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGLS 78
          EFYVKDGKQMPGKKG+S
Sbjct: 61 EFYVKDGKQMPGKKGIS 77

[Close]

BLAST of CmUC04G069790 vs. NCBI nr
Match: XP_038881106.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Benincasa hispida])

HSP 1 Score: 151.8 bits (382), Expect = 2.9e-33
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKDEEDHASEGD PPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDEEDHASEGDAPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGL 77
          EFYVKDGKQMPGKKG+
Sbjct: 61 EFYVKDGKQMPGKKGV 76

[Close]

BLAST of CmUC04G069790 vs. NCBI nr
Match: XP_023518433.1 (RNA polymerase II transcriptional coactivator KIWI-like [Cucurbita pepo subsp. pepo] >KAG6595609.1 RNA polymerase II transcriptional coactivator KIWI, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.7 bits (374), Expect = 2.5e-32
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKD+EDHASEGD PP KTFKKDSD+TDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDEDHASEGDAPPKKTFKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGLS 78
          EFYVKDGK+MPGKKG+S
Sbjct: 61 EFYVKDGKEMPGKKGIS 77

[Close]

BLAST of CmUC04G069790 vs. NCBI nr
Match: KAG6603408.1 (RNA polymerase II transcriptional coactivator KIWI, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.1 bits (370), Expect = 7.2e-32
Identity = 70/77 (90.91%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKD+EDH SEGD PP KTF+KDSD+TDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGLS 78
          EFYVKDGKQMPGKKG+S
Sbjct: 61 EFYVKDGKQMPGKKGIS 77

[Close]

BLAST of CmUC04G069790 vs. ExPASy Swiss-Prot
Match: O65154 (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=3702 GN=KIWI PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.3e-20
Identity = 54/83 (65.06%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 1  MSARGKRKDEE----DHASEGDVPPSKTFK--KDSDDTDEIVVCEISKNRRVMVRNWQGK 60
          MS+RGKRKDE+    D  SE   P  K  K   DSD +D+IVVC ISKNRRV VRNW GK
Sbjct: 1  MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61 IVVDIREFYVKDGKQMPGKKGLS 78
          I +DIREFYVKDGK +PGKKG+S
Sbjct: 61 IWIDIREFYVKDGKTLPGKKGIS 83

[Close]

BLAST of CmUC04G069790 vs. ExPASy Swiss-Prot
Match: O65155 (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=3702 GN=KELP PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.6e-08
Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 8   KDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDG 67
           K+EED    GD    K   K+ DD  ++++C +S  RRV ++ ++GK +V IRE+Y KDG
Sbjct: 74  KEEED----GDKDCGKG-NKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDG 133

Query: 68  KQMPGKKGLS 78
           K++P  KG+S
Sbjct: 134 KELPTSKGIS 138

[Close]

BLAST of CmUC04G069790 vs. ExPASy Swiss-Prot
Match: P53999 (Activated RNA polymerase II transcriptional coactivator p15 OS=Homo sapiens OX=9606 GN=SUB1 PE=1 SV=3)

HSP 1 Score: 45.8 bits (107), Expect = 3.0e-04
Identity = 22/65 (33.85%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 17  GDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKG 76
           G+   + +  K S  + +  + +I K R V VR+++GK+++DIRE+++  +G+  PG+KG
Sbjct: 43  GETSRALSSSKQSSSSRDDNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKG 102

Query: 77  LSHHP 81
           +S +P
Sbjct: 103 ISLNP 107

[Close]

BLAST of CmUC04G069790 vs. ExPASy Swiss-Prot
Match: Q4R947 (Activated RNA polymerase II transcriptional coactivator p15 OS=Macaca fascicularis OX=9541 GN=SUB1 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.0e-04
Identity = 22/65 (33.85%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 17  GDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKG 76
           G+   + +  K S  + +  + +I K R V VR+++GK+++DIRE+++  +G+  PG+KG
Sbjct: 43  GETSRALSSSKQSSSSRDDNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKG 102

Query: 77  LSHHP 81
           +S +P
Sbjct: 103 ISLNP 107

[Close]

BLAST of CmUC04G069790 vs. ExPASy Swiss-Prot
Match: Q5R6D0 (Activated RNA polymerase II transcriptional coactivator p15 OS=Pongo abelii OX=9601 GN=SUB1 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.0e-04
Identity = 22/65 (33.85%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 17  GDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKG 76
           G+   + +  K S  + +  + +I K R V VR+++GK+++DIRE+++  +G+  PG+KG
Sbjct: 43  GETSRALSSSKQSSSSRDDNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKG 102

Query: 77  LSHHP 81
           +S +P
Sbjct: 103 ISLNP 107

[Close]

BLAST of CmUC04G069790 vs. ExPASy TrEMBL
Match: A0A6J1HRT2 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466134 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.0e-32
Identity = 70/77 (90.91%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKD+EDHASEGD PP KTFKKDS++TDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDEDHASEGDAPPKKTFKKDSEETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGLS 78
          EFYVKDGK+MPGKKG S
Sbjct: 61 EFYVKDGKEMPGKKGFS 77

[Close]

BLAST of CmUC04G069790 vs. ExPASy TrEMBL
Match: A0A6J1EYI2 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439635 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31
Identity = 69/77 (89.61%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKD+EDH  EGD PP KTF+KDSD+TDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDEDHVYEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGLS 78
          EFYVKDGKQMPGKKG+S
Sbjct: 61 EFYVKDGKQMPGKKGIS 77

[Close]

BLAST of CmUC04G069790 vs. ExPASy TrEMBL
Match: A0A6J1EHI0 (RNA polymerase II transcriptional coactivator KIWI-like OS=Cucurbita moschata OX=3662 GN=LOC111432568 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKD+EDHASEGD PP KT KKDS++TDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDEDHASEGDAPPKKTLKKDSEETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGLS 78
          EFYVKDGK+MPGKKG+S
Sbjct: 61 EFYVKDGKEMPGKKGIS 77

[Close]

BLAST of CmUC04G069790 vs. ExPASy TrEMBL
Match: A0A6J1D8A4 (RNA polymerase II transcriptional coactivator KIWI-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017843 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.0e-31
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKD+++HASEGD PP KT KKDSD+TDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGLS 78
          EFYVKDGKQMPGKKG+S
Sbjct: 61 EFYVKDGKQMPGKKGIS 77

[Close]

BLAST of CmUC04G069790 vs. ExPASy TrEMBL
Match: A0A6J1D5M3 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017843 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.0e-31
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKD+++HASEGD PP KT KKDSD+TDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGLS 78
          EFYVKDGKQMPGKKG+S
Sbjct: 61 EFYVKDGKQMPGKKGIS 77

[Close]

BLAST of CmUC04G069790 vs. TAIR 10
Match: AT5G09250.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 100.1 bits (248), Expect = 9.5e-22
Identity = 54/83 (65.06%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 1  MSARGKRKDEE----DHASEGDVPPSKTFK--KDSDDTDEIVVCEISKNRRVMVRNWQGK 60
          MS+RGKRKDE+    D  SE   P  K  K   DSD +D+IVVC ISKNRRV VRNW GK
Sbjct: 1  MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61 IVVDIREFYVKDGKQMPGKKGLS 78
          I +DIREFYVKDGK +PGKKG+S
Sbjct: 61 IWIDIREFYVKDGKTLPGKKGIS 83

[Close]

BLAST of CmUC04G069790 vs. TAIR 10
Match: AT5G09250.2 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 97.8 bits (242), Expect = 4.7e-21
Identity = 53/81 (65.43%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 1  MSARGKRKDEE----DHASEGDVPPSKTFK--KDSDDTDEIVVCEISKNRRVMVRNWQGK 60
          MS+RGKRKDE+    D  SE   P  K  K   DSD +D+IVVC ISKNRRV VRNW GK
Sbjct: 1  MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61 IVVDIREFYVKDGKQMPGKKG 76
          I +DIREFYVKDGK +PGKKG
Sbjct: 61 IWIDIREFYVKDGKTLPGKKG 81

[Close]

BLAST of CmUC04G069790 vs. TAIR 10
Match: AT5G09240.2 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-11
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 1  MSARGKRKDEEDHA------SEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGK 60
          MS  GKRKDE+  A      SE   PP K   K +D+ ++I +C + KNRRV VRN  G+
Sbjct: 1  MSENGKRKDEDVRASDDRDESETHAPPKKV-AKPADEIEDIFICNLDKNRRVFVRNCNGR 60

Query: 61 IVVDIREFYVKDGKQMP--GKKGLS 78
          I + IR+F+VKDG  +P   K+G+S
Sbjct: 61 IWIAIRQFFVKDGITLPCNSKQGIS 84

[Close]

BLAST of CmUC04G069790 vs. TAIR 10
Match: AT5G09240.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-11
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 1  MSARGKRKDEEDHA------SEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGK 60
          MS  GKRKDE+  A      SE   PP K   K +D+ ++I +C + KNRRV VRN  G+
Sbjct: 1  MSENGKRKDEDVRASDDRDESETHAPPKKV-AKPADEIEDIFICNLDKNRRVFVRNCNGR 60

Query: 61 IVVDIREFYVKDGKQMP--GKKGLS 78
          I + IR+F+VKDG  +P   K+G+S
Sbjct: 61 IWIAIRQFFVKDGITLPCNSKQGIS 84

[Close]

BLAST of CmUC04G069790 vs. TAIR 10
Match: AT5G09240.3 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 63.9 bits (154), Expect = 7.5e-11
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 1  MSARGKRKDEEDHA------SEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGK 60
          MS  GKRKDE+  A      SE   PP K   K +D+ ++I +C + KNRRV VRN  G+
Sbjct: 1  MSENGKRKDEDVRASDDRDESETHAPPKKV-AKPADEIEDIFICNLDKNRRVFVRNCNGR 60

Query: 61 IVVDIREFYVKDGKQMP 72
          I + IR+F+VKDG  +P
Sbjct: 61 IWIAIRQFFVKDGITLP 76

The following BLAST results are available for this feature:

BLAST of CmUC04G069790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033606.1	2.0e-34	86.36	RNA polymerase II transcriptional coactivator KIWI [Cucurbita argyrosperma subsp...	[more]
XP_038881105.1	5.9e-34	97.40	RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Benincasa hi...	[more]
XP_038881106.1	2.9e-33	97.37	RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Benincasa hi...	[more]
XP_023518433.1	2.5e-32	92.21	RNA polymerase II transcriptional coactivator KIWI-like [Cucurbita pepo subsp. p...	[more]
KAG6603408.1	7.2e-32	90.91	RNA polymerase II transcriptional coactivator KIWI, partial [Cucurbita argyrospe...	[more]

BLAST of CmUC04G069790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65154	1.3e-20	65.06	RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=37...	[more]
O65155	7.6e-08	42.86	RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=37...	[more]
P53999	3.0e-04	33.85	Activated RNA polymerase II transcriptional coactivator p15 OS=Homo sapiens OX=9...	[more]
Q4R947	3.0e-04	33.85	Activated RNA polymerase II transcriptional coactivator p15 OS=Macaca fascicular...	[more]
Q5R6D0	3.0e-04	33.85	Activated RNA polymerase II transcriptional coactivator p15 OS=Pongo abelii OX=9...	[more]

BLAST of CmUC04G069790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HRT2	6.0e-32	90.91	RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita ...	[more]
A0A6J1EYI2	1.7e-31	89.61	RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita ...	[more]
A0A6J1EHI0	1.7e-31	89.61	RNA polymerase II transcriptional coactivator KIWI-like OS=Cucurbita moschata OX...	[more]
A0A6J1D8A4	3.0e-31	89.61	RNA polymerase II transcriptional coactivator KIWI-like isoform X2 OS=Momordica ...	[more]
A0A6J1D5M3	3.0e-31	89.61	RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Momordica ...	[more]

BLAST of CmUC04G069790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09250.1	9.5e-22	65.06	ssDNA-binding transcriptional regulator	[more]
AT5G09250.2	4.7e-21	65.43	ssDNA-binding transcriptional regulator	[more]
AT5G09240.2	2.0e-11	45.88	ssDNA-binding transcriptional regulator	[more]
AT5G09240.1	2.0e-11	45.88	ssDNA-binding transcriptional regulator	[more]
AT5G09240.3	7.5e-11	46.75	ssDNA-binding transcriptional regulator	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003173	Transcriptional coactivator p15 (PC4), C-terminal	PFAM	PF02229	PC4	coord: 38..77 e-value: 1.8E-16 score: 59.5
IPR009044	ssDNA-binding transcriptional regulator	GENE3D	2.30.31.10	Transcriptional Coactivator Pc4; Chain A	coord: 26..88 e-value: 5.5E-18 score: 66.4
IPR009044	ssDNA-binding transcriptional regulator	SUPERFAMILY	54447	ssDNA-binding transcriptional regulator domain	coord: 37..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR13215:SF9	BNAC09G47220D PROTEIN	coord: 1..77
IPR045125	RNA polymerase II transcriptional coactivator Sub1/Tcp4-like	PANTHER	PTHR13215	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC04G069790.1	CmUC04G069790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0060261	positive regulation of transcription initiation from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription regulator complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003713	transcription coactivator activity