CmUC04G069490 (gene) Watermelon (USVL531) v1

Overview
NameCmUC04G069490
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionS locus-related glycoprotein 1 binding pollen coat
LocationCmU531Chr04: 4932477 .. 4932981 (+)
RNA-Seq ExpressionCmUC04G069490
SyntenyCmUC04G069490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGCTAGTTTCTTCTTCTAGTATTATTTTCATTGTTCTTATTTTTGCAGGTTTTCCTTCTTGTTCCATAAATACTATATTATCATGAGTTACAAAATTAAATATCCATTTGGCATGTTATGATATCTCTATTTAATGATTTTAGAAATTTCATGAGTCTTCTAACAAATCTATCAACCTTTTCATATCTGTGAAATATTGACACTCTTGTTGACATAGATAGTAAATTTTTTTTGTTATGGTAGGATATTGCTAATTTATTTATTTATTTATTTTTATTTTTGTTATTGTATATAGTTGCACTAATCTTGGTGCCTCAAGGAGCCTCAGCTGCCCAAAAATGTCAAGACATATTGTATAACAATGGGTGCACTCTTGATGACTGTGGAAAGAAATGTTGGGAGAAGCACCATAGTATTTCACATCAATGCATTCCAACTAATCTTGCGCAAACCATCTATGCTTGTTATTGTTTCTTTGATTGTGGTAAAAAAAATTGA

mRNA sequence

ATGGCGAAGCTAGTTTCTTCTTCTAGTATTATTTTCATTGTTCTTATTTTTGCAGGTTTTCCTTCTTTTGCACTAATCTTGGTGCCTCAAGGAGCCTCAGCTGCCCAAAAATGTCAAGACATATTGTATAACAATGGGTGCACTCTTGATGACTGTGGAAAGAAATGTTGGGAGAAGCACCATAGTATTTCACATCAATGCATTCCAACTAATCTTGCGCAAACCATCTATGCTTGTTATTGTTTCTTTGATTGTGGTAAAAAAAATTGA

Coding sequence (CDS)

ATGGCGAAGCTAGTTTCTTCTTCTAGTATTATTTTCATTGTTCTTATTTTTGCAGGTTTTCCTTCTTTTGCACTAATCTTGGTGCCTCAAGGAGCCTCAGCTGCCCAAAAATGTCAAGACATATTGTATAACAATGGGTGCACTCTTGATGACTGTGGAAAGAAATGTTGGGAGAAGCACCATAGTATTTCACATCAATGCATTCCAACTAATCTTGCGCAAACCATCTATGCTTGTTATTGTTTCTTTGATTGTGGTAAAAAAAATTGA

Protein sequence

MAKLVSSSSIIFIVLIFAGFPSFALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDCGKKN
Homology
BLAST of CmUC04G069490 vs. NCBI nr
Match: KAE8649772.1 (hypothetical protein Csa_012405, partial [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 8.4e-25
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 0

Query: 24 ALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFF 83
          AL+L  Q  SAAQ+CQD+LYN GC L+DCGKKCWEKHH+ISHQCIPTN +QTIYACYCFF
Sbjct: 1  ALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFF 60

Query: 84 DCG 87
          DCG
Sbjct: 61 DCG 63

BLAST of CmUC04G069490 vs. NCBI nr
Match: KAA0042348.1 (S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >TYK15471.1 S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 8.7e-22
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 0

Query: 1  MAKLVSSSSIIFIVLIFAGFPSFALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKH 60
          M KL  SS I+ I L  A     A+ILVPQGA A ++CQD LY+ GCTL DCG+KCWEKH
Sbjct: 1  MTKLY-SSWILTIALTIA----VAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKH 60

Query: 61 HSISHQCIPTNLAQTIYACYCFFDCGK 88
          H  SHQCIPT+  QTIYACYCF++CG+
Sbjct: 61 HDASHQCIPTDPGQTIYACYCFYNCGQ 82

BLAST of CmUC04G069490 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_022748 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 7.3e-21
Identity = 57/86 (66.28%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MAKLVSSSSIIFIVLIFAGFPSFALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKH 60
          M KL  SS I+ IVLI A     A+I +PQGA AA +CQDILYN+GCTL DCG+KCWEKH
Sbjct: 1  MTKLY-SSWILTIVLIIA----VAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKH 60

Query: 61 HSISHQCIPTNLAQTIYACYCFFDCG 87
          H  S QCIPT+  QTIYACYCF+ CG
Sbjct: 61 HEASRQCIPTDPDQTIYACYCFYTCG 80

BLAST of CmUC04G069490 vs. NCBI nr
Match: CAB4286917.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-12
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 14 VLIFAGFPSFALIL----VPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIP 73
          ++ F  F  FA+ L    VPQ A A ++C++ LY++GCTL DCGKKCW+KHH   H C+ 
Sbjct: 19 IVHFYKFDDFAVALNNQNVPQ-AYAQKRCEEQLYSSGCTLLDCGKKCWDKHHDAGHTCV- 78

Query: 74 TNLAQTIYACYCFFDC 86
           N+AQ  YACYC F+C
Sbjct: 79 ANVAQIDYACYCMFNC 92

BLAST of CmUC04G069490 vs. NCBI nr
Match: BBH07492.1 (hypothetical protein Prudu_019451 [Prunus dulcis])

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-12
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 28  VPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDC 86
           VPQ A A ++C + LY +GCTL DCGKKCWEKHH   ++CI  N+AQT YACYC F+C
Sbjct: 57  VPQ-AYAQKRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCI-ANVAQTDYACYCMFNC 112

BLAST of CmUC04G069490 vs. ExPASy TrEMBL
Match: A0A0A0L2R3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.3e-26
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 0

Query: 5  VSSSSIIFIVLIFAGFPSFALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSIS 64
          + SS II   LIFA     AL+L  Q  SAAQ+CQD+LYN GC L+DCGKKCWEKHH++S
Sbjct: 1  MDSSRIICFALIFA----VALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVS 60

Query: 65 HQCIPTNLAQTIYACYCFFDCG 87
          HQCIPTN +QTIYACYCFFDCG
Sbjct: 61 HQCIPTNPSQTIYACYCFFDCG 78

BLAST of CmUC04G069490 vs. ExPASy TrEMBL
Match: A0A5A7THQ7 (S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00450 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.2e-22
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 0

Query: 1  MAKLVSSSSIIFIVLIFAGFPSFALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKH 60
          M KL  SS I+ I L  A     A+ILVPQGA A ++CQD LY+ GCTL DCG+KCWEKH
Sbjct: 1  MTKLY-SSWILTIALTIA----VAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKH 60

Query: 61 HSISHQCIPTNLAQTIYACYCFFDCGK 88
          H  SHQCIPT+  QTIYACYCF++CG+
Sbjct: 61 HDASHQCIPTDPGQTIYACYCFYNCGQ 82

BLAST of CmUC04G069490 vs. ExPASy TrEMBL
Match: A0A0A0LVZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.6e-21
Identity = 57/86 (66.28%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MAKLVSSSSIIFIVLIFAGFPSFALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKH 60
          M KL  SS I+ IVLI A     A+I +PQGA AA +CQDILYN+GCTL DCG+KCWEKH
Sbjct: 1  MTKLY-SSWILTIVLIIA----VAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKH 60

Query: 61 HSISHQCIPTNLAQTIYACYCFFDCG 87
          H  S QCIPT+  QTIYACYCF+ CG
Sbjct: 61 HEASRQCIPTDPDQTIYACYCFYTCG 80

BLAST of CmUC04G069490 vs. ExPASy TrEMBL
Match: A0A4Y1RT05 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_019451 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.9e-13
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 28  VPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDC 86
           VPQ A A ++C + LY +GCTL DCGKKCWEKHH   ++CI  N+AQT YACYC F+C
Sbjct: 57  VPQ-AYAQKRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCI-ANVAQTDYACYCMFNC 112

BLAST of CmUC04G069490 vs. ExPASy TrEMBL
Match: A0A6J5VH03 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS44688 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.9e-13
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 14 VLIFAGFPSFALIL----VPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIP 73
          ++ F  F  FA+ L    VPQ A A ++C++ LY++GCTL DCGKKCW+KHH   H C+ 
Sbjct: 19 IVHFYKFDDFAVALNNQNVPQ-AYAQKRCEEQLYSSGCTLLDCGKKCWDKHHDAGHTCV- 78

Query: 74 TNLAQTIYACYCFFDC 86
           N+AQ  YACYC F+C
Sbjct: 79 ANVAQIDYACYCMFNC 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649772.18.4e-2579.37hypothetical protein Csa_012405, partial [Cucumis sativus][more]
KAA0042348.18.7e-2263.22S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >T... [more]
KGN64987.17.3e-2166.28hypothetical protein Csa_022748 [Cucumis sativus][more]
CAB4286917.11.6e-1251.32unnamed protein product [Prunus armeniaca][more]
BBH07492.11.6e-1262.07hypothetical protein Prudu_019451 [Prunus dulcis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L2R36.3e-2669.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1[more]
A0A5A7THQ74.2e-2263.22S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa O... [more]
A0A0A0LVZ53.6e-2166.28Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1[more]
A0A4Y1RT057.9e-1362.07Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_019451 PE=3 SV=1[more]
A0A6J5VH037.9e-1351.32Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS44688 PE=3 S... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851Defensin-like proteinPFAMPF07333SLR1-BPcoord: 35..85
e-value: 2.7E-6
score: 27.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC04G069490.1CmUC04G069490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044419 biological process involved in interspecies interaction between organisms