CmUC04G069370 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC04G069370
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	transcription elongation factor B polypeptide 3
Location	CmU531Chr04: 4546789 .. 4547514 (+)
RNA-Seq Expression	CmUC04G069370
Synteny	CmUC04G069370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGAAGAAGTAAGTAAAATAACTACCTCCTTTTTTAATAATCTTTCCATTAACAAAGCTATAGATAGTTTGAAGTTTCTTGGAGATGTTGGGGATTCTGATTTCAATCTTCTAGACCGTATTTTGCCACATTGTACTATTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGAGATCTCACACCTGTAACTGACAAATTGTGGAAAAACTTCTATGAAAAAAAGTTTGGTAAGAACGATTCTGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAGTGTATGAAGCAAAGATGGAAGAGTTAGAAAAGAAGGCCAAGAAAATTGAGGCTCGATATATACAAAACCGTCAAAAGGAAAAAGCTCAAAAAGAAAGCCGTCAAATAATATTTTGTGGGGGTTCTTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAACCGAATGAGTTTGGATGCAATACCAACGAGACCAAGATTTTGAAGAAGTCCAAGAGAGAAGAACAAATTTGTGAAGTTCCATTTACGATCAATAATAAGAAGAAACAAAGCTTTGGAGGGACAACCAAACCTAGACAAGATACTAAGTCAAGCAAGACTAAGCCAAGCAAGATATGGAAGAAGGCAAAGAGAGAAGCGTTGGGGTGTATAGAGACGAAGAACCTAATAGCTTTTCGAAGAAATGTGATGCAAAAGTAG

mRNA sequence

ATGTGTGAAGAAGTAAGTAAAATAACTACCTCCTTTTTTAATAATCTTTCCATTAACAAAGCTATAGATAGTTTGAAGTTTCTTGGAGATGTTGGGGATTCTGATTTCAATCTTCTAGACCGTATTTTGCCACATTGTACTATTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGAGATCTCACACCTGTAACTGACAAATTGTGGAAAAACTTCTATGAAAAAAAGTTTGGTAAGAACGATTCTGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAGTGTATGAAGCAAAGATGGAAGAGTTAGAAAAGAAGGCCAAGAAAATTGAGGCTCGATATATACAAAACCGTCAAAAGGAAAAAGCTCAAAAAGAAAGCCGTCAAATAATATTTTGTGGGGGTTCTTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAACCGAATGAGTTTGGATGCAATACCAACGAGACCAAGATTTTGAAGAAGTCCAAGAGAGAAGAACAAATTTGTGAAGTTCCATTTACGATCAATAATAAGAAGAAACAAAGCTTTGGAGGGACAACCAAACCTAGACAAGATACTAAGTCAAGCAAGACTAAGCCAAGCAAGATATGGAAGAAGGCAAAGAGAGAAGCGTTGGGGTGTATAGAGACGAAGAACCTAATAGCTTTTCGAAGAAATGTGATGCAAAAGTAG

Coding sequence (CDS)

ATGTGTGAAGAAGTAAGTAAAATAACTACCTCCTTTTTTAATAATCTTTCCATTAACAAAGCTATAGATAGTTTGAAGTTTCTTGGAGATGTTGGGGATTCTGATTTCAATCTTCTAGACCGTATTTTGCCACATTGTACTATTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGAGATCTCACACCTGTAACTGACAAATTGTGGAAAAACTTCTATGAAAAAAAGTTTGGTAAGAACGATTCTGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAGTGTATGAAGCAAAGATGGAAGAGTTAGAAAAGAAGGCCAAGAAAATTGAGGCTCGATATATACAAAACCGTCAAAAGGAAAAAGCTCAAAAAGAAAGCCGTCAAATAATATTTTGTGGGGGTTCTTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAACCGAATGAGTTTGGATGCAATACCAACGAGACCAAGATTTTGAAGAAGTCCAAGAGAGAAGAACAAATTTGTGAAGTTCCATTTACGATCAATAATAAGAAGAAACAAAGCTTTGGAGGGACAACCAAACCTAGACAAGATACTAAGTCAAGCAAGACTAAGCCAAGCAAGATATGGAAGAAGGCAAAGAGAGAAGCGTTGGGGTGTATAGAGACGAAGAACCTAATAGCTTTTCGAAGAAATGTGATGCAAAAGTAG

Protein sequence

MCEEVSKITTSFFNNLSINKAIDSLKFLGDVGDSDFNLLDRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRQKEKAQKESRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQSFGGTTKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK

Homology

[Close]

BLAST of CmUC04G069370 vs. NCBI nr
Match: XP_038885873.1 (uncharacterized protein LOC120076176 [Benincasa hispida])

HSP 1 Score: 307.0 bits (785), Expect = 1.4e-79
Identity = 171/242 (70.66%), Postives = 194/242 (80.17%), Query Frame = 0


Query: 1   MCEEVSKITTSFFNNLSINKAIDSLKFLGDVGDSDFNLLDRILPHCTIDQLMHIENSSKG 60
           MCEEVSKI +SF ++ SIN+AIDSL+FLGDVGD+D ++L+RILPHCT+DQLMHIENSSKG
Sbjct: 1   MCEEVSKIASSFLSHDSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKG 60

Query: 61  RDLTPVTDKLWKNFYEKKFGKNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEA 120
           RDLTPVTDKLWKNFYEKKFGKNDSD VI++MK+KKESFKWKQ+YEAKME LEKKA +IEA
Sbjct: 61  RDLTPVTDKLWKNFYEKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEA 120

Query: 121 RYIQNRQKEKAQKESRQIIFCGG-SSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQI 180
           RY QN QKE A+K+SR+IIFC   SS  NKKRR EG      CNT E+KILKK  RE Q+
Sbjct: 121 RYKQNCQKENARKQSRKIIFCEDVSSSNNKKRRSEGTIKS-ECNTTESKILKKPNREAQM 180

Query: 181 CEVPFTINNKKKQSFGGTTKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVM 240
           C+V          S GGTTKP       +TK SKI KKAKREAL CIETKN+IAFRRN M
Sbjct: 181 CQV----------SSGGTTKP-----GHRTKQSKILKKAKREALQCIETKNVIAFRRNAM 226

Query: 241 QK 242
           QK
Sbjct: 241 QK 226

[Close]

BLAST of CmUC04G069370 vs. NCBI nr
Match: XP_038885879.1 (uncharacterized protein LOC120076185 [Benincasa hispida])

HSP 1 Score: 290.0 bits (741), Expect = 1.8e-74
Identity = 165/242 (68.18%), Postives = 187/242 (77.27%), Query Frame = 0


Query: 1   MCEEVSKITTSFFNNLSINKAIDSLKFLGDVGDSDFNLLDRILPHCTIDQLMHIENSSKG 60
           MCEEVSKI +SF ++ SIN+AID+L+FL DVGD+D ++L RILPHCT+DQL+HIENSSKG
Sbjct: 1   MCEEVSKIASSFLSHDSINEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKG 60

Query: 61  RDLTPVTDKLWKNFYEKKFGKNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEA 120
           RDLT VTDKLWKNFY KKFGKND D  IERMK+KKESFKWKQ+YEAKME LEKKA +IEA
Sbjct: 61  RDLTLVTDKLWKNFYVKKFGKNDFDLAIERMKYKKESFKWKQLYEAKMEALEKKAMEIEA 120

Query: 121 RYIQNRQKEKAQKESRQIIFCGG-SSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQI 180
           RY QN QKE A+K+SR+IIFC   SS  NKK R EG      CNT E+KILKK  RE Q+
Sbjct: 121 RYKQNCQKENARKQSRKIIFCEDVSSSNNKKGRSEGTIKS-ECNTTESKILKKPNREAQM 180

Query: 181 CEVPFTINNKKKQSFGGTTKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVM 240
           C+V          S GGTTKP       +TK SKI KKAKREAL CIETKN+IAFRRN M
Sbjct: 181 CQV----------SSGGTTKP-----GHRTKQSKILKKAKREALQCIETKNVIAFRRNAM 226

Query: 241 QK 242
           QK
Sbjct: 241 QK 226

[Close]

BLAST of CmUC04G069370 vs. NCBI nr
Match: XP_022979571.1 (uncharacterized protein LOC111479252 [Cucurbita maxima])

HSP 1 Score: 215.7 bits (548), Expect = 4.4e-52
Identity = 122/224 (54.46%), Postives = 155/224 (69.20%), Query Frame = 0


Query: 18  INKAIDSLKFLGDVGDSDFNLLDRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +NKAIDSL+FLGDVG +D N L+ ILPHCT+DQLMHIEN SKGRDLTP+T+KLWK FYE+
Sbjct: 5   VNKAIDSLRFLGDVGQTDLNFLEHILPHCTVDQLMHIENCSKGRDLTPITNKLWKTFYER 64

Query: 78  KFGKNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRQKEKAQKESRQ 137
           KFGK+D + V++RMKH KESF+WKQ+YE K++ELE KA ++E RYI+N Q EKA+K+SRQ
Sbjct: 65  KFGKDDVNCVVDRMKH-KESFRWKQMYELKIKELEDKAVEVEKRYIRNCQNEKARKQSRQ 124

Query: 138 IIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQSFGGT 197
           +  C            E  P+        +K+LKK K   ++C+V  + NN K+   GGT
Sbjct: 125 VKIC------------EISPS--------SKVLKKPKVHTKVCQVS-SANNNKRSYLGGT 184

Query: 198 TKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK 242
                         SKI KKA++E L  IETKNLIAFRRN +QK
Sbjct: 185 --------------SKILKKARKETLQSIETKNLIAFRRNAIQK 192

[Close]

BLAST of CmUC04G069370 vs. NCBI nr
Match: KAG6582214.1 (hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-51
Identity = 125/224 (55.80%), Postives = 154/224 (68.75%), Query Frame = 0


Query: 18  INKAIDSLKFLGDVGDSDFNLLDRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +NKAIDSL+FLGDVG  D N L+ ILPHCT+DQLMHIEN SKGRDLTPVT+KLWK FYEK
Sbjct: 5   VNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENCSKGRDLTPVTNKLWKTFYEK 64

Query: 78  KFGKNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRQKEKAQKESRQ 137
           KFG++  + V+ERMKH KESF+WKQ+YE KM+ELE+KA +IE RYIQN + EK +K+SRQ
Sbjct: 65  KFGEDGVNGVLERMKH-KESFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKNRKQSRQ 124

Query: 138 IIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQSFGGT 197
           +  C            E  P+        +K+LKK K + +IC+V    NNK+  S+GG 
Sbjct: 125 VKIC------------EISPS--------SKVLKKPKVQTKICQVSSATNNKR--SYGGG 184

Query: 198 TKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK 242
           T             SKI KKA++E    IETKNLIAFRRN +QK
Sbjct: 185 T-------------SKILKKARKETRQSIETKNLIAFRRNAIQK 192

[Close]

BLAST of CmUC04G069370 vs. NCBI nr
Match: XP_022979565.1 (uncharacterized protein LOC111479243 [Cucurbita maxima])

HSP 1 Score: 209.5 bits (532), Expect = 3.1e-50
Identity = 123/224 (54.91%), Postives = 154/224 (68.75%), Query Frame = 0


Query: 18  INKAIDSLKFLGDVGDSDFNLLDRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +NKAIDSL+FLGDVG +D N L+ ILPHCT++QLM IENSSKGRDLTPVT+KLWK FYE+
Sbjct: 5   VNKAIDSLRFLGDVGQTDLNFLEHILPHCTVEQLMRIENSSKGRDLTPVTNKLWKTFYER 64

Query: 78  KFGKNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRQKEKAQKESRQ 137
           KFGK+  + V+E MKH KESFKWKQ+YE K++ELE+KA +IE RYIQN Q EKA+K+SRQ
Sbjct: 65  KFGKDAVNGVLEMMKH-KESFKWKQMYELKIKELEEKAVEIEKRYIQNCQNEKARKQSRQ 124

Query: 138 IIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQSFGGT 197
           +  C            E  P+        +K+LKKSK   + C+V  + +N K+   GGT
Sbjct: 125 VKIC------------EISPS--------SKVLKKSKVHTKFCQVS-SAHNDKRSYLGGT 184

Query: 198 TKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK 242
                         SKI KKA++E L  IETKN+IAFRRN +QK
Sbjct: 185 --------------SKILKKARKETLQSIETKNVIAFRRNTVQK 192

[Close]

BLAST of CmUC04G069370 vs. ExPASy TrEMBL
Match: A0A6J1IR58 (uncharacterized protein LOC111479252 OS=Cucurbita maxima OX=3661 GN=LOC111479252 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.1e-52
Identity = 122/224 (54.46%), Postives = 155/224 (69.20%), Query Frame = 0


Query: 18  INKAIDSLKFLGDVGDSDFNLLDRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +NKAIDSL+FLGDVG +D N L+ ILPHCT+DQLMHIEN SKGRDLTP+T+KLWK FYE+
Sbjct: 5   VNKAIDSLRFLGDVGQTDLNFLEHILPHCTVDQLMHIENCSKGRDLTPITNKLWKTFYER 64

Query: 78  KFGKNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRQKEKAQKESRQ 137
           KFGK+D + V++RMKH KESF+WKQ+YE K++ELE KA ++E RYI+N Q EKA+K+SRQ
Sbjct: 65  KFGKDDVNCVVDRMKH-KESFRWKQMYELKIKELEDKAVEVEKRYIRNCQNEKARKQSRQ 124

Query: 138 IIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQSFGGT 197
           +  C            E  P+        +K+LKK K   ++C+V  + NN K+   GGT
Sbjct: 125 VKIC------------EISPS--------SKVLKKPKVHTKVCQVS-SANNNKRSYLGGT 184

Query: 198 TKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK 242
                         SKI KKA++E L  IETKNLIAFRRN +QK
Sbjct: 185 --------------SKILKKARKETLQSIETKNLIAFRRNAIQK 192

[Close]

BLAST of CmUC04G069370 vs. ExPASy TrEMBL
Match: A0A6J1ITM2 (uncharacterized protein LOC111479243 OS=Cucurbita maxima OX=3661 GN=LOC111479243 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50
Identity = 123/224 (54.91%), Postives = 154/224 (68.75%), Query Frame = 0


Query: 18  INKAIDSLKFLGDVGDSDFNLLDRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +NKAIDSL+FLGDVG +D N L+ ILPHCT++QLM IENSSKGRDLTPVT+KLWK FYE+
Sbjct: 5   VNKAIDSLRFLGDVGQTDLNFLEHILPHCTVEQLMRIENSSKGRDLTPVTNKLWKTFYER 64

Query: 78  KFGKNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRQKEKAQKESRQ 137
           KFGK+  + V+E MKH KESFKWKQ+YE K++ELE+KA +IE RYIQN Q EKA+K+SRQ
Sbjct: 65  KFGKDAVNGVLEMMKH-KESFKWKQMYELKIKELEEKAVEIEKRYIQNCQNEKARKQSRQ 124

Query: 138 IIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQSFGGT 197
           +  C            E  P+        +K+LKKSK   + C+V  + +N K+   GGT
Sbjct: 125 VKIC------------EISPS--------SKVLKKSKVHTKFCQVS-SAHNDKRSYLGGT 184

Query: 198 TKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK 242
                         SKI KKA++E L  IETKN+IAFRRN +QK
Sbjct: 185 --------------SKILKKARKETLQSIETKNVIAFRRNTVQK 192

[Close]

BLAST of CmUC04G069370 vs. ExPASy TrEMBL
Match: A0A0A0KJR8 (Nudix hydrolase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G511010 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.0e-42
Identity = 102/180 (56.67%), Postives = 130/180 (72.22%), Query Frame = 0


Query: 15  NLSINKAIDSLKFLGDVGDSDFNLLDRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           N  +NKAIDS+KFLGDVGD+D   L+ IL HCT DQL+HIEN SKGRDLTP+T+KLWKNF
Sbjct: 12  NSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKNF 71

Query: 75  YEKKFGKNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRQKEKAQKE 134
           YE+KFGK+D D V+     K E+FKW  +Y AKM+ELE +AKKIE R IQ+ QKEKA+K+
Sbjct: 72  YERKFGKDDVDIVV-----KNETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 131

Query: 135 SRQIIFCGG-SSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQS 194
           SRQI+FCG   S ++ K     +   F  NT ++  LKK+KRE  + +V  T +NK+  S
Sbjct: 132 SRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTLKKAKRELHVPKVS-TSSNKEWNS 185

[Close]

BLAST of CmUC04G069370 vs. ExPASy TrEMBL
Match: A0A5D3BGR1 (Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00180 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-40
Identity = 89/162 (54.94%), Postives = 119/162 (73.46%), Query Frame = 0


Query: 15  NLSINKAIDSLKFLGDVGDSDFNLLDRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L +NKAID+++FLGDVG++D +LL+RILPHCT+DQLMH+E SS+GRDLTPVTDKLWK F
Sbjct: 12  DLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKF 71

Query: 75  YEKKFGKNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRQKEKAQKE 134
           YE++FGK  +  VIERM+ K+ +F+W Q+YEAKM+++EK   K   R  Q+  KE A+K+
Sbjct: 72  YERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENARKQ 131

Query: 135 SRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKRE 177
           SRQI  C    P + KR F G    +     + KILKK+K E
Sbjct: 132 SRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIE 173

[Close]

BLAST of CmUC04G069370 vs. ExPASy TrEMBL
Match: A0A1S4E1U0 (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-40
Identity = 89/162 (54.94%), Postives = 119/162 (73.46%), Query Frame = 0


Query: 15  NLSINKAIDSLKFLGDVGDSDFNLLDRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L +NKAID+++FLGDVG++D +LL+RILPHCT+DQLMH+E SS+GRDLTPVTDKLWK F
Sbjct: 12  DLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKF 71

Query: 75  YEKKFGKNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRQKEKAQKE 134
           YE++FGK  +  VIERM+ K+ +F+W Q+YEAKM+++EK   K   R  Q+  KE A+K+
Sbjct: 72  YERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENARKQ 131

Query: 135 SRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKRE 177
           SRQI  C    P + KR F G    +     + KILKK+K E
Sbjct: 132 SRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIE 173

[Close]

BLAST of CmUC04G069370 vs. TAIR 10
Match: AT2G42780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). )

HSP 1 Score: 110.2 bits (274), Expect = 2.4e-24
Identity = 77/234 (32.91%), Postives = 130/234 (55.56%), Query Frame = 0


Query: 15  NLSINKAIDSLKFLGDVGDSDFNLLDRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L + KAID++K++G VG  DF LL++IL HCT++QL HIE+++   DL+P+TDK WK F
Sbjct: 15  DLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWKGF 74

Query: 75  YEKKFGKNDSDFVIERMK-HKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRQKEKAQK 134
           Y+K +G+ D   +IE ++ +K   FKW+ +YE K+  +++K K++  R  +  + E  +K
Sbjct: 75  YKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYKDENERK 134

Query: 135 ESRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETK--ILKKSK----REEQICEVPFTIN 194
           +SRQ   C  + P   KR F G  +  G N    K  I+KK+K    + +++  +     
Sbjct: 135 QSRQTKVCSKAPP--SKRPFWGN-SASGYNLGHVKSNIMKKAKIDLLKSQEVKNLTAIKR 194

Query: 195 NKKKQSFGGTTKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK 242
           N  ++SF  +T  +    ++    S+      R         NL   ++N +QK
Sbjct: 195 NTIQKSFSISTPKKTGLSANSPSTSRSIPYGGR---------NLTETKKNTIQK 236

[Close]

BLAST of CmUC04G069370 vs. TAIR 10
Match: AT2G42780.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684). )

HSP 1 Score: 109.4 bits (272), Expect = 4.1e-24
Identity = 71/206 (34.47%), Postives = 120/206 (58.25%), Query Frame = 0


Query: 15  NLSINKAIDSLKFLGDVGDSDFNLLDRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L + KAID++K++G VG  DF LL++IL HCT++QL HIE+++   DL+P+TDK WK F
Sbjct: 15  DLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWKGF 74

Query: 75  YEKKFGKNDSDFVIERMK-HKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRQKEKAQK 134
           Y+K +G+ D   +IE ++ +K   FKW+ +YE K+  +++K K++  R  +  + E  +K
Sbjct: 75  YKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYKDENERK 134

Query: 135 ESRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETK--ILKKSK----REEQICEVPFTIN 194
           +SRQ   C  + P   KR F G  +  G N    K  I+KK+K    + +++  +     
Sbjct: 135 QSRQTKVCSKAPP--SKRPFWGN-SASGYNLGHVKSNIMKKAKIDLLKSQEVKNLTAIKR 194

Query: 195 NKKKQSFGGTTKPRQDTKSSKTKPSK 214
           N  ++SF  +   R    ++    S+
Sbjct: 195 NTIQKSFSISAPKRTGLSANAPSTSR 217

The following BLAST results are available for this feature:

BLAST of CmUC04G069370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885873.1	1.4e-79	70.66	uncharacterized protein LOC120076176 [Benincasa hispida]	[more]
XP_038885879.1	1.8e-74	68.18	uncharacterized protein LOC120076185 [Benincasa hispida]	[more]
XP_022979571.1	4.4e-52	54.46	uncharacterized protein LOC111479252 [Cucurbita maxima]	[more]
KAG6582214.1	1.7e-51	55.80	hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022979565.1	3.1e-50	54.91	uncharacterized protein LOC111479243 [Cucurbita maxima]	[more]

BLAST of CmUC04G069370 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC04G069370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IR58	2.1e-52	54.46	uncharacterized protein LOC111479252 OS=Cucurbita maxima OX=3661 GN=LOC111479252...	[more]
A0A6J1ITM2	1.5e-50	54.91	uncharacterized protein LOC111479243 OS=Cucurbita maxima OX=3661 GN=LOC111479243...	[more]
A0A0A0KJR8	2.0e-42	56.67	Nudix hydrolase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G51...	[more]
A0A5D3BGR1	1.4e-40	54.94	Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. ...	[more]
A0A1S4E1U0	1.4e-40	54.94	transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=36...	[more]

BLAST of CmUC04G069370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42780.1	2.4e-24	32.91	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]
AT2G42780.2	4.1e-24	34.47	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 101..128
None	No IPR available	GENE3D	6.10.250.3180		coord: 24..131 e-value: 9.1E-22 score: 79.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..214
None	No IPR available	PANTHER	PTHR47543	OS08G0169600 PROTEIN	coord: 14..176
IPR010684	RNA polymerase II transcription factor SIII, subunit A	PFAM	PF06881	Elongin_A	coord: 29..138 e-value: 2.8E-23 score: 82.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC04G069370.1	CmUC04G069370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
cellular_component	GO:0070449	elongin complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0047631	ADP-ribose diphosphatase activity
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0035529	NADH pyrophosphatase activity