CmUC04G068900 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC04G068900
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Gag/pol protein
Location	CmU531Chr04: 3184957 .. 3185349 (+)
RNA-Seq Expression	CmUC04G068900
Synteny	CmUC04G068900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGATTATATGCTCGTGTATGACACTAAGGATCTAATCCTTATAAGATACACTGACTCTGATTTTCAAACTGATATAGATTCGAGGAAATTTACATCAGGATTAGTGTTCACTCTAAATGAAGGAGCAATAGTTTGGAGGAGTATCAAACAAGGTTGTATAGTTGACTCCACCTTGGAAGCTGAGTACGTAGCTGCATGTTTAGCAGCAAATGAAGCAGTATGGCTCAAGAAGCTCTTAGCAAATCTGGAAGTTGTTCCAAATATGCATTTGCCTATCACTCTCTATTGTGATAATAGTGATGTAGTTGCAAATTCCAAAGAACCTAGAAGCCATAAGCGCGGCAAACACATTGAACGCAAATATCATATCATTAGAGAAATTGTGTAG

mRNA sequence

ATGAGGGATTATATGCTCGTGTATGACACTAAGGATCTAATCCTTATAAGATACACTGACTCTGATTTTCAAACTGATATAGATTCGAGGAAATTTACATCAGGATTAGTGTTCACTCTAAATGAAGGAGCAATAGTTTGGAGGAGTATCAAACAAGGTTGTATAGTTGACTCCACCTTGGAAGCTGAGTACGTAGCTGCATGTTTAGCAGCAAATGAAGCAGTATGGCTCAAGAAGCTCTTAGCAAATCTGGAAGTTGTTCCAAATATGCATTTGCCTATCACTCTCTATTGTGATAATAGTGATGTAGTTGCAAATTCCAAAGAACCTAGAAGCCATAAGCGCGGCAAACACATTGAACGCAAATATCATATCATTAGAGAAATTGTGTAG

Coding sequence (CDS)

ATGAGGGATTATATGCTCGTGTATGACACTAAGGATCTAATCCTTATAAGATACACTGACTCTGATTTTCAAACTGATATAGATTCGAGGAAATTTACATCAGGATTAGTGTTCACTCTAAATGAAGGAGCAATAGTTTGGAGGAGTATCAAACAAGGTTGTATAGTTGACTCCACCTTGGAAGCTGAGTACGTAGCTGCATGTTTAGCAGCAAATGAAGCAGTATGGCTCAAGAAGCTCTTAGCAAATCTGGAAGTTGTTCCAAATATGCATTTGCCTATCACTCTCTATTGTGATAATAGTGATGTAGTTGCAAATTCCAAAGAACCTAGAAGCCATAAGCGCGGCAAACACATTGAACGCAAATATCATATCATTAGAGAAATTGTGTAG

Protein sequence

MRDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVANSKEPRSHKRGKHIERKYHIIREIV

Homology

[Close]

BLAST of CmUC04G068900 vs. NCBI nr
Match: KAA0061170.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 221.1 bits (562), Expect = 5.6e-54
Identity = 109/129 (84.50%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 2   RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLE 61
           RDYMLVY  KDLIL  YTDSDFQTD DSRK TSG VFTLNEGA+VWRSIKQGCI DST+E
Sbjct: 224 RDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNEGAVVWRSIKQGCIADSTME 283

Query: 62  AEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVANSKEPRSHKRGKHIER 121
           AEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS  VANSKEPRSHKRGKHIER
Sbjct: 284 AEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 343

Query: 122 KYHIIREIV 131
           KYH+IREIV
Sbjct: 344 KYHLIREIV 352

[Close]

BLAST of CmUC04G068900 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 3.7e-53
Identity = 108/129 (83.72%), Postives = 114/129 (88.37%), Query Frame = 0


Query: 2   RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLE 61
           RDYMLVY  KDLIL  YTDSDFQTD DSRK TSG VFTLN GA+VWRSIKQGCI DST+E
Sbjct: 128 RDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTME 187

Query: 62  AEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVANSKEPRSHKRGKHIER 121
           AEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS  VANSKEPRSHKRGKHIER
Sbjct: 188 AEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 247

Query: 122 KYHIIREIV 131
           KYH+IREIV
Sbjct: 248 KYHLIREIV 256

[Close]

BLAST of CmUC04G068900 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 3.7e-53
Identity = 108/129 (83.72%), Postives = 114/129 (88.37%), Query Frame = 0


Query: 2    RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLE 61
            RDYMLVY  KDLIL  YTDSDFQTD DSRK TSG VFTLN GA+VWRSIKQGCI DST+E
Sbjct: 1063 RDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTME 1122

Query: 62   AEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVANSKEPRSHKRGKHIER 121
            AEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS  VANSKEPRSHKRGKHIER
Sbjct: 1123 AEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 1182

Query: 122  KYHIIREIV 131
            KYH+IREIV
Sbjct: 1183 KYHLIREIV 1191

[Close]

BLAST of CmUC04G068900 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 3.7e-53
Identity = 108/129 (83.72%), Postives = 114/129 (88.37%), Query Frame = 0


Query: 2    RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLE 61
            RDYMLVY  KDLIL  YTDSDFQTD DSRK TSG VFTLN GA+VWRSIKQGCI DST+E
Sbjct: 937  RDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTME 996

Query: 62   AEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVANSKEPRSHKRGKHIER 121
            AEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS  VANSKEPRSHKRGKHIER
Sbjct: 997  AEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 1056

Query: 122  KYHIIREIV 131
            KYH+IREIV
Sbjct: 1057 KYHLIREIV 1065

[Close]

BLAST of CmUC04G068900 vs. NCBI nr
Match: KAA0040406.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 216.9 bits (551), Expect = 1.1e-52
Identity = 107/129 (82.95%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 2   RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLE 61
           RDYMLVY TKDLIL  YTDS+FQTD DSRK TSG VFTLN GA+VWRSIKQGCI DST+E
Sbjct: 81  RDYMLVYGTKDLILTVYTDSNFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTME 140

Query: 62  AEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVANSKEPRSHKRGKHIER 121
           AEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS  VANSKEPRSHKRGKHIER
Sbjct: 141 AEYVAACEAAKEAVWLRKFLHDLEVVPNMYLPITLYCDNSGTVANSKEPRSHKRGKHIER 200

Query: 122 KYHIIREIV 131
           KYH+IR+IV
Sbjct: 201 KYHLIRKIV 209

[Close]

BLAST of CmUC04G068900 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.5e-20
Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = 0


Query: 6    LVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYV 65
            L +   D IL  YTD+D   DID+RK ++G +FT + GAI W+S  Q C+  ST EAEY+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 66   AACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVANSKEPRSHKRGKHIERKYHI 125
            AA     E +WLK+ L  L +    ++   +YCD+   +  SK    H R KHI+ +YH 
Sbjct: 1226 AATETGKEMIWLKRFLQELGLHQKEYV---VYCDSQSAIDLSKNSMYHARTKHIDVRYHW 1285

Query: 126  IREIV 131
            IRE+V
Sbjct: 1286 IREMV 1287

[Close]

BLAST of CmUC04G068900 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 81.3 bits (199), Expect = 9.1e-15
Identity = 45/117 (38.46%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 15   LIRYTDSDFQTDIDSRKFTSGLVFTLNE-GAIVWRSIKQGCIVDSTLEAEYVAACLAANE 74
            +I Y DSD+      RK T+G +F + +   I W + +Q  +  S+ EAEY+A   A  E
Sbjct: 1248 IIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVRE 1307

Query: 75   AVWLKKLLANLEVVPNMHLPITLYCDNSDVVANSKEPRSHKRGKHIERKYHIIREIV 131
            A+WLK LL ++ +   +  PI +Y DN   ++ +  P  HKR KHI+ KYH  RE V
Sbjct: 1308 ALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQV 1362

[Close]

BLAST of CmUC04G068900 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-09
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 15  LIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEA 74
           L+ Y+D+D+  D++SR+ TSG +F LN G + WRS KQ  +  S+ E EY+A   A  EA
Sbjct: 71  LVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEA 130

Query: 75  VWL 78
           VWL
Sbjct: 131 VWL 133

[Close]

BLAST of CmUC04G068900 vs. ExPASy TrEMBL
Match: A0A5A7V1F5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00440 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.7e-54
Identity = 109/129 (84.50%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 2   RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLE 61
           RDYMLVY  KDLIL  YTDSDFQTD DSRK TSG VFTLNEGA+VWRSIKQGCI DST+E
Sbjct: 224 RDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNEGAVVWRSIKQGCIADSTME 283

Query: 62  AEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVANSKEPRSHKRGKHIER 121
           AEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS  VANSKEPRSHKRGKHIER
Sbjct: 284 AEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 343

Query: 122 KYHIIREIV 131
           KYH+IREIV
Sbjct: 344 KYHLIREIV 352

[Close]

BLAST of CmUC04G068900 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.8e-53
Identity = 108/129 (83.72%), Postives = 114/129 (88.37%), Query Frame = 0


Query: 2    RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLE 61
            RDYMLVY  KDLIL  YTDSDFQTD DSRK TSG VFTLN GA+VWRSIKQGCI DST+E
Sbjct: 1063 RDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTME 1122

Query: 62   AEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVANSKEPRSHKRGKHIER 121
            AEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS  VANSKEPRSHKRGKHIER
Sbjct: 1123 AEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 1182

Query: 122  KYHIIREIV 131
            KYH+IREIV
Sbjct: 1183 KYHLIREIV 1191

[Close]

BLAST of CmUC04G068900 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.8e-53
Identity = 108/129 (83.72%), Postives = 114/129 (88.37%), Query Frame = 0


Query: 2    RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLE 61
            RDYMLVY  KDLIL  YTDSDFQTD DSRK TSG VFTLN GA+VWRSIKQGCI DST+E
Sbjct: 937  RDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTME 996

Query: 62   AEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVANSKEPRSHKRGKHIER 121
            AEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS  VANSKEPRSHKRGKHIER
Sbjct: 997  AEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 1056

Query: 122  KYHIIREIV 131
            KYH+IREIV
Sbjct: 1057 KYHLIREIV 1065

[Close]

BLAST of CmUC04G068900 vs. ExPASy TrEMBL
Match: A0A5A7TKM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00470 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.8e-53
Identity = 108/129 (83.72%), Postives = 114/129 (88.37%), Query Frame = 0


Query: 2   RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLE 61
           RDYMLVY  KDLIL  YTDSDFQTD DSRK TSG VFTLN GA+VWRSIKQGCI DST+E
Sbjct: 128 RDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTME 187

Query: 62  AEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVANSKEPRSHKRGKHIER 121
           AEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS  VANSKEPRSHKRGKHIER
Sbjct: 188 AEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 247

Query: 122 KYHIIREIV 131
           KYH+IREIV
Sbjct: 248 KYHLIREIV 256

[Close]

BLAST of CmUC04G068900 vs. ExPASy TrEMBL
Match: A0A5A7TE91 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00210 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.1e-53
Identity = 107/129 (82.95%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 2   RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLE 61
           RDYMLVY TKDLIL  YTDS+FQTD DSRK TSG VFTLN GA+VWRSIKQGCI DST+E
Sbjct: 81  RDYMLVYGTKDLILTVYTDSNFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTME 140

Query: 62  AEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVANSKEPRSHKRGKHIER 121
           AEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS  VANSKEPRSHKRGKHIER
Sbjct: 141 AEYVAACEAAKEAVWLRKFLHDLEVVPNMYLPITLYCDNSGTVANSKEPRSHKRGKHIER 200

Query: 122 KYHIIREIV 131
           KYH+IR+IV
Sbjct: 201 KYHLIRKIV 209

[Close]

BLAST of CmUC04G068900 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-12
Identity = 38/111 (34.23%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 18  YTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWL 77
           ++D+ FQ+  D+R+ T+G    L    I W+S KQ  +  S+ EAEY A   A +E +WL
Sbjct: 445 FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWL 504

Query: 78  KKLLANLEVVPNMHLPITLYCDNSDVVANSKEPRSHKRGKHIERKYHIIRE 129
            +    L++   +  P  L+CDN+  +  +     H+R KHIE   H +RE
Sbjct: 505 AQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

The following BLAST results are available for this feature:

BLAST of CmUC04G068900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061170.1	5.6e-54	84.50	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0042496.1	3.7e-53	83.72	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	3.7e-53	83.72	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	3.7e-53	83.72	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0040406.1	1.1e-52	82.95	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of CmUC04G068900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.5e-20	42.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	9.1e-15	38.46	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	2.6e-09	47.62	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of CmUC04G068900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V1F5	2.7e-54	84.50	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G0044...	[more]
A0A5A7TZD0	1.8e-53	83.72	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	1.8e-53	83.72	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5A7TKM4	1.8e-53	83.72	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G0047...	[more]
A0A5A7TE91	5.1e-53	82.95	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00210...	[more]

BLAST of CmUC04G068900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.5e-12	34.23	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 42..128
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 42..128
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 18..130 e-value: 9.77191E-47 score: 145.689

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC04G068900.1	CmUC04G068900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding