CmUC04G068540 (gene) Watermelon (USVL531) v1

Overview
NameCmUC04G068540
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr04: 2148881 .. 2149093 (+)
RNA-Seq ExpressionCmUC04G068540
SyntenyCmUC04G068540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAGCTTTTCACTTCCAAAGCCTTCTTGGTTGCCGCCTTCATCCTTGCCGTCTGCTCCACCGGCAGCTTGGTTTCTGGAGTCGCCGATGACTTCGCCCCGGCCCCTGCTCCTGGGCGTGAGGCCGGATCTGGCTTCTCTCTGCCAATCTCCGGCGCCGTCGTTGGCTCCTCTCTTCTCCTTTCTCTTCTTCACCTTCTCAGGCATTGA

mRNA sequence

ATGGCAAAGCTTTTCACTTCCAAAGCCTTCTTGGTTGCCGCCTTCATCCTTGCCGTCTGCTCCACCGGCAGCTTGGTTTCTGGAGTCGCCGATGACTTCGCCCCGGCCCCTGCTCCTGGGCGTGAGGCCGGATCTGGCTTCTCTCTGCCAATCTCCGGCGCCGTCGTTGGCTCCTCTCTTCTCCTTTCTCTTCTTCACCTTCTCAGGCATTGA

Coding sequence (CDS)

ATGGCAAAGCTTTTCACTTCCAAAGCCTTCTTGGTTGCCGCCTTCATCCTTGCCGTCTGCTCCACCGGCAGCTTGGTTTCTGGAGTCGCCGATGACTTCGCCCCGGCCCCTGCTCCTGGGCGTGAGGCCGGATCTGGCTTCTCTCTGCCAATCTCCGGCGCCGTCGTTGGCTCCTCTCTTCTCCTTTCTCTTCTTCACCTTCTCAGGCATTGA

Protein sequence

MAKLFTSKAFLVAAFILAVCSTGSLVSGVADDFAPAPAPGREAGSGFSLPISGAVVGSSLLLSLLHLLRH
Homology
BLAST of CmUC04G068540 vs. NCBI nr
Match: KAG6769237.1 (hypothetical protein POTOM_024855 [Populus tomentosa])

HSP 1 Score: 61.2 bits (147), Expect = 4.0e-06
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 0

Query: 2  AKLFTSKAFLVAAFILAVCSTGSLVSGV-ADDFAPAPAPGREAGSGFSLPISGAVVGSSL 61
          A++  SKAFL+   I A     ++VSG  ++  APAPAPG EAG+GFSLP+SGA+VG SL
Sbjct: 3  AQVIISKAFLLFLMIAAF----AVVSGQDSESMAPAPAPGMEAGAGFSLPVSGAIVGFSL 62

Query: 62 LLSLLHLLRH 71
          ++SLL  L+H
Sbjct: 63 VVSLLGFLKH 68

BLAST of CmUC04G068540 vs. NCBI nr
Match: KAG6743831.1 (hypothetical protein POTOM_052534 [Populus tomentosa])

HSP 1 Score: 60.1 bits (144), Expect = 8.9e-06
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 0

Query: 16  ILAVCSTGSLVSGVADDFAPAPAPGREAGSGFSLPISGAVVGSSLLLSLLHLLRH 71
           +L + +  + VSG   + APAPAPG +AG+GFSLP+SGA+VG SL++SLL  L+H
Sbjct: 95  MLVIATFAAAVSGQDSETAPAPAPGMDAGAGFSLPVSGAIVGFSLVVSLLGFLKH 149

BLAST of CmUC04G068540 vs. NCBI nr
Match: PNS97967.1 (hypothetical protein POPTR_016G052400 [Populus trichocarpa])

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-05
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 0

Query: 1  MAKLFTSKAFLVAAFILAVCSTGSLVSGVADDFAPAPAPGREAGSGFSLPISGAVVGSSL 60
          + ++  SKAF    F+L   +  ++VS    + APAPAPG +AG+GFSLP+SGAVVG SL
Sbjct: 2  VTQVIISKAF----FLLLAIAAFAVVSAQESEMAPAPAPGMDAGAGFSLPVSGAVVGFSL 61

Query: 61 LLSLLHLLR 70
           LSLL  L+
Sbjct: 62 ALSLLGFLK 66

BLAST of CmUC04G068540 vs. NCBI nr
Match: PNS97965.1 (hypothetical protein POPTR_016G052200 [Populus trichocarpa])

HSP 1 Score: 58.2 bits (139), Expect = 3.4e-05
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 1  MAKLFTSKAFLVAAFILAVCSTGSLVSGVADDFAPAPAPGREAGSGFSLPISGAVVGSSL 60
          MA+    KA ++   +L + +  + VS    + APAPAPG +AG+GFSLP+SGA+VG SL
Sbjct: 1  MAQFSIPKALVL---MLVIATFAAAVSAQDSEMAPAPAPGMDAGAGFSLPVSGAIVGFSL 60

Query: 61 LLSLLHLLRH 71
          ++SLL  L+H
Sbjct: 61 VVSLLGFLKH 67

BLAST of CmUC04G068540 vs. NCBI nr
Match: KAG6744821.1 (hypothetical protein POTOM_051461 [Populus tomentosa])

HSP 1 Score: 58.2 bits (139), Expect = 3.4e-05
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 0

Query: 2   AKLFTSKAFLVAAFILAVCSTGSLVSGVADDFAPAPAPGREAGSGFSLPISGAVVGSSLL 61
           A++  SKAF    F+L   +  ++VS    + APAPAPG +AG+GFSLP+SGAV+G SL 
Sbjct: 120 AQVTISKAF----FLLLAIAAFAVVSAQESEMAPAPAPGMDAGAGFSLPVSGAVLGFSLA 179

Query: 62  LSLLHLLR 70
           LSLL  L+
Sbjct: 180 LSLLGFLK 183

BLAST of CmUC04G068540 vs. ExPASy TrEMBL
Match: A0A2K1XB04 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G052400 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-05
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 0

Query: 1  MAKLFTSKAFLVAAFILAVCSTGSLVSGVADDFAPAPAPGREAGSGFSLPISGAVVGSSL 60
          + ++  SKAF    F+L   +  ++VS    + APAPAPG +AG+GFSLP+SGAVVG SL
Sbjct: 2  VTQVIISKAF----FLLLAIAAFAVVSAQESEMAPAPAPGMDAGAGFSLPVSGAVVGFSL 61

Query: 61 LLSLLHLLR 70
           LSLL  L+
Sbjct: 62 ALSLLGFLK 66

BLAST of CmUC04G068540 vs. ExPASy TrEMBL
Match: U5FKQ0 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G052200 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 1  MAKLFTSKAFLVAAFILAVCSTGSLVSGVADDFAPAPAPGREAGSGFSLPISGAVVGSSL 60
          MA+    KA ++   +L + +  + VS    + APAPAPG +AG+GFSLP+SGA+VG SL
Sbjct: 1  MAQFSIPKALVL---MLVIATFAAAVSAQDSEMAPAPAPGMDAGAGFSLPVSGAIVGFSL 60

Query: 61 LLSLLHLLRH 71
          ++SLL  L+H
Sbjct: 61 VVSLLGFLKH 67

BLAST of CmUC04G068540 vs. ExPASy TrEMBL
Match: A0A4U5NMG4 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000261490 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 0

Query: 2   AKLFTSKAFLVAAFILAVCSTGSLVSGVADDFAPAPAPGREAGSGFSLPISGAVVGSSLL 61
           A++  SKAF    F+L   +  ++VS    + APAPAPG +AG+GFSLP+SGAV+G SL 
Sbjct: 67  AQVTISKAF----FLLLAIAAFAVVSAQESEMAPAPAPGMDAGAGFSLPVSGAVLGFSLA 126

Query: 62  LSLLHLLR 70
           LSLL  L+
Sbjct: 127 LSLLGFLK 130

BLAST of CmUC04G068540 vs. ExPASy TrEMBL
Match: U7DW91 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056000 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 0

Query: 2  AKLFTSKAFLVAAFILAVCSTGSLVSGVADDFAPAPAPGREAGSGFSLPISGAVVGSSLL 61
          A++   KAFL+    L + +   + +  ++  APAPAPG EAG+GFSLP+SGA+VG SL+
Sbjct: 3  AQVIIPKAFLL---FLVIAAFAVVSAQDSESMAPAPAPGMEAGAGFSLPVSGAIVGFSLV 62

Query: 62 LSLLHLLRH 71
          +SLL  L+H
Sbjct: 63 VSLLGFLKH 68

BLAST of CmUC04G068540 vs. ExPASy TrEMBL
Match: A9P8U7 (Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.8e-05
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 0

Query: 2  AKLFTSKAFLVAAFILAVCSTGSLVSGVADDFAPAPAPGREAGSGFSLPISGAVVGSSLL 61
          A++   KAFL+   I A     +  S   +  APAPAPG EAG+GFSLP+SGA+VG SL+
Sbjct: 3  AQVIIPKAFLLFLLIAAFAVVSAQDS---ESMAPAPAPGMEAGAGFSLPVSGAMVGFSLV 62

Query: 62 LSLLHLLRH 71
          +SLL  L+H
Sbjct: 63 VSLLGFLKH 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6769237.14.0e-0654.29hypothetical protein POTOM_024855 [Populus tomentosa][more]
KAG6743831.18.9e-0654.55hypothetical protein POTOM_052534 [Populus tomentosa][more]
PNS97967.12.6e-0550.72hypothetical protein POPTR_016G052400 [Populus trichocarpa][more]
PNS97965.13.4e-0547.14hypothetical protein POPTR_016G052200 [Populus trichocarpa][more]
KAG6744821.13.4e-0551.47hypothetical protein POTOM_051461 [Populus tomentosa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2K1XB041.3e-0550.72Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G052400 PE=4 ... [more]
U5FKQ01.6e-0547.14Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G052200 PE=4 ... [more]
A0A4U5NMG41.6e-0551.47Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000261490 PE=4 SV=1[more]
U7DW912.2e-0547.83Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056000 PE=4 ... [more]
A9P8U72.8e-0550.72Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33659:SF11SUBFAMILY NOT NAMEDcoord: 1..70
NoneNo IPR availablePANTHERPTHR33659PROTEIN, PUTATIVE-RELATED-RELATEDcoord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC04G068540.1CmUC04G068540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane