Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTAAGGAAAGGTATCCACTTCACATAAATCAAAGATACATATTCGCATGTAGAATATTTCCCTATTAGGTCTAAGAACTTAGCCGGCTTAGTTAATATCTTCAGTGCTGTTTATAATACTCTCTCCTATTGGCTCTCTGTTGGACGATGGCAGAACATCAGGAGGTCAAACGGAACATCATTGCATCCTTTTTCTATAGCTAGGCTATCTTTCTTCAAGAGAGGAACCCAGCCCTTTTCTTTCTTGCAACATGGCATCCCTTGCCACGTTTTGCAAGCTCCTTCCTTTGTTGAGCTCTGTCATCCCGCTCTTCGAGATCTTTCATTGGCGCAATCTTCTTTTCATTCAATCAAAAATTGCGATTGACTTTGATTCAAGATATCTCCTCCCTTTAATCGTACTTTAATCTAAGCTATTACTTCAGAGTCAGGCACGAGACGAAAGGAAGGTAAACAGGAGTTAACGGCAGGCGCAATAGAAAGTTGGGGGCAGGCGGGCGATAGGCTTAGATCAGATGCAAGCAAGCTCAGTCTCAATATGCGCATTAGAGAAGGGGGGAGTGTGAGGTGGGTTGGCGCTTCGGTCAAGAGGCGGGATAGCGTCCCACCTTCCTGTCTTGACTGGTAGGCACAATCGCTTGAGTCTAGTTCTTGAGCGAAGGAATCGCTTTCAATGAAAATTTCTCTTTAGCAATCAGCCATCAGCCCTCTTCAAGCTGTCGAATATAGATAGGAGATCCACTTCGACGTTCAAGGCTGGCAGCAAGCGTAAGTGCAATCGCAATCCCTATGAATTTCATTAATTAATATCTCTCCCGCCCTAACGCACTCTGTTATGGCGCAATCACTGACTGACGTTCTGAAGTTCTAGGTCTTAACGCTCTCCGCGCTGTCTCCTTCTGGTAATGCATGAGAGGCTGTCTTCCTTCCACCTCTCTCTATCGCCCTTCCTTCTTTTAGCGGCTCATCTCGAATCGTCGAATGTTTAGCGAATCGATCGTAATTGGTCTGACCGCTCAAGGCTTATCTCTCGATTCCCCTTTCTGGTCTCCGGTCATTGGTAGAAAGCCTTGAAATTCCATTTCTCTCCTCTCCAGCTTGGGAATACTTCTTTCTATTGGCTATATATCTTTACAATGCCAGTTCAAGCTATCTTCTGTCTCGAGCAAGAAAAGGTATGCGCAAGTGCAGTAGTTCAAGGCAGGCAGGTAAGGGCATTGATAGGGAAATGCACGCACTTGTAGTTGTTTCAGATGCGATCAAAAAGCCTTTTTTTTTCAAGCGTAGAGACTACATATGAGGAAGATGCGAATAGAGATGCGGAAGTTCCTGTTGAAGTTAGAGGTGCAGGAGCAGTGAACATGACTCTTGCAGAAGAGGAAGAAATGCGGTAA mRNA sequence ATGGTAAGGAAAGAGTCAGGCACGAGACGAAAGGAAGGTAAACAGGAGTTAACGGCAGGCGCAATAGAAAGTTGGGGGCAGGCGGGCGATAGGCTTAGATCAGATGCAAGCAAGCTCAGTCTCAATATGCGCATTAGAGAAGGGGGGAGTGTGAGGTGGGTTGGCGCTTCGGTCAAGAGGCGGGATAGCGTCCCACCTTCCTGTCTTGACTGCAATCAGCCATCAGCCCTCTTCAAGCTGTCGAATATAGATAGGAGATCCACTTCGACGTTCAAGGCTGGCAGCAAGCGTCTTAACGCTCTCCGCGCTGTCTCCTTCTGTTCAAGCTATCTTCTGTCTCGAGCAAGAAAAGGTATGCGCAAGTGCAGTAGTTCAAGGCAGGCAGAGACTACATATGAGGAAGATGCGAATAGAGATGCGGAAGTTCCTGTTGAAGTTAGAGGTGCAGGAGCAGTGAACATGACTCTTGCAGAAGAGGAAGAAATGCGGTAA Coding sequence (CDS) ATGGTAAGGAAAGAGTCAGGCACGAGACGAAAGGAAGGTAAACAGGAGTTAACGGCAGGCGCAATAGAAAGTTGGGGGCAGGCGGGCGATAGGCTTAGATCAGATGCAAGCAAGCTCAGTCTCAATATGCGCATTAGAGAAGGGGGGAGTGTGAGGTGGGTTGGCGCTTCGGTCAAGAGGCGGGATAGCGTCCCACCTTCCTGTCTTGACTGCAATCAGCCATCAGCCCTCTTCAAGCTGTCGAATATAGATAGGAGATCCACTTCGACGTTCAAGGCTGGCAGCAAGCGTCTTAACGCTCTCCGCGCTGTCTCCTTCTGTTCAAGCTATCTTCTGTCTCGAGCAAGAAAAGGTATGCGCAAGTGCAGTAGTTCAAGGCAGGCAGAGACTACATATGAGGAAGATGCGAATAGAGATGCGGAAGTTCCTGTTGAAGTTAGAGGTGCAGGAGCAGTGAACATGACTCTTGCAGAAGAGGAAGAAATGCGGTAA Protein sequence MVRKESGTRRKEGKQELTAGAIESWGQAGDRLRSDASKLSLNMRIREGGSVRWVGASVKRRDSVPPSCLDCNQPSALFKLSNIDRRSTSTFKAGSKRLNALRAVSFCSSYLLSRARKGMRKCSSSRQAETTYEEDANRDAEVPVEVRGAGAVNMTLAEEEEMR
Homology
BLAST of CmUC03G061520 vs. NCBI nr
Match: KAF3452190.1 (hypothetical protein FNV43_RR08288 [Rhamnella rubrinervis]) HSP 1 Score: 86.7 bits (213), Expect = 2.1e-13 Identity = 49/64 (76.56%), Postives = 51/64 (79.69%), Query Frame = 0
Query: 7 GTRRKEGKQELTAGAIESWGQAGDRLRSDASKLSLNMRIREGGSVRWVGASVKRRDSVPP 66
GT RKEGKQELTAGAIE +AGDRLRSDASKLSLNMRIREGG + VKR SVPP
Sbjct: 20 GTLRKEGKQELTAGAIERQLEAGDRLRSDASKLSLNMRIREGG----LALPVKRLASVPP 79
Query: 67 SCLD 71
SCLD
Sbjct: 80 SCLD 79
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAF3452190.1 | 2.1e-13 | 76.56 | hypothetical protein FNV43_RR08288 [Rhamnella rubrinervis] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..20 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..17 |
Relationships
The following mRNA feature(s) are a part of this gene:
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