CmUC03G061310 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC03G061310
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CmU531Chr03: 22748278 .. 22750502 (+)
RNA-Seq Expression	CmUC03G061310
Synteny	CmUC03G061310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACCAAAAGTTCAAGCGGTTCTGAGTTGGAAAAATTCAACAATCCCTCATTGAACCAACTCCTTAATCAAATCACGAGCACAAAGCTTGAGAGGGGAAATTTTCTACTGTGGAAGACACTTGCTCTGCCCATTCTCAGAAGTTACAAACTCGAGGGTCATCTTTCCGGTAAGAATCCTTGCCCTCCAATGTTTCTTCCAATATCAAGTGAAAATGCAACACCTACTGTAGTCAATACCGAATGAGCCTCAAGCTCTCAAATGGTGTTAGAAGATTCTGTAAGTACCACGATCGAACGCACTCTGAATCCGGCGTGTGAAGCATGGATCACTGTTGATCAGTTGCGTTAGGATGATTTTATAATTCCATGACCCCAGAGATCGTCGTGCAACTTATAGGTTTTGAAAATGCCAAAGAACTTTGGGAGGCTATTCAAGAACTCTTCGATGTATAATCAAGGGCCGAAGAAGATTATCTCCGCCAAATTTTTTAGCAGACGCGGAAAGGTAACACCAAAATGAGCGAATATCTACGAATTATGAAGTCTCACTTTAATAATCTTGCACATGCAGGAAGTCCAGTTTCCACCAGGGCTCTTATTTCGCAGGTGCTCCTTGGGCTTGATGAAGAGTATAATCCTGTAGTTGTTGGGATATGAGGCAAACCTGGCATATCATGGCTCGATATGCAGTTCGAGCTCATGTTCTATGAGAAACGATTGGAGCATCAAAATGCTGTGAAAACATCTAGCACCTTCAATCAAAGTGTGTCCGTGAATGCAGCCTTTAATCAAAATTTGAATGGGTCAAAACCTCCACTGAAATCCAATTTCAAGCAACAATTCAGTGGGCAACGAGGAAATGGAGGTAACAACATTGAAGGAAATGGTGGAAATCAAGGAAGAGGTCGGAGATGAGGCAATAATCGACTGATTTGTCAAGTGTGTGGTAAGTATGGGCACATTGCCCTTGTTTGTTAGAATCGTTTTGAAAAAGAATTCTCCCCTGCTTAAGCCCTAAACCCTACTATCTACTTTTAAGTCTAAGTCTGATCTCAGTATTTCATACGGTGATTAAAAAGTCTTAAGGGAGCTTGATGAATTTGAAGAATGATCTGTAAGGGAGCTTAATTTATCTATGTCAAAATGTTAGGGTTGTGATGTTCAAGGGAAATTTGTTAAATGCTTAATAAGAGGAAGTATGCTTAATTTGAAATTAAGAGGAAGATTGGTCTAAGTATTAAATGTTGAAGGAAAATGAAGTGGTTAGGTATTAAGTTAAAAAAAAAAAAAATAATAATAAATGGAAGTGGCAAAGTACTCGAGAGGAATGAGAGTTTTCTTATAAAATTAATTTAAAATACTCACCAAATAAGAAAATTAGGGAAGTGGGAACTAATTTAGTGGGCGAGAAAAAGTGAAGTAGGAGGTGGAAGTTAACCATTTGAAATTGAAAAGGTGCAGTTGGTGGATATTTATCCTAAGCAAAGGGAGAGTGGCATTCCCATTTTGGCTCGGGCAATGCCCAAAATGTTTTCTGGAAGTGAAAGAGGAATGAGTTAGGAAGACAACTGTGGGCTGTTGATCGAATTCGAGCTTGAGAAGTTGAAGTTTTTTAATGAAAATCTGAAGGTTGTGCAGAATTTCGGGAAGGCATGGAGTCATGGGTTGTTGGAGCTGATTTTGAGAATATCGGACAGTTGGAGGTTGGGACTTTTGATAGAGTTCTTAATGTTTTGGAGGAAGAATAGGTCATAAAATCAATCTTTGGTGAGTCCACTCTTTAATTTTCATTTTAAAATTGAAGAATATAGTATAAGTAGGTTGGTGGTAAGTAATTTTGGCAGCAAAGGATGAAGAAACAATGAAAAATAGTTGTTGTAAAAAAAAATTCAGCTGTTTGTCATTAATTTTACTGTTGTTTTCTCAATATTTTGGTTATTGTTTTGTGTTGAAAAATGAACATACAACTATTGTTTTGTTCTAATTCTAAGATAAAAAGCATATCTTGACCAATTCTAAGAGAGTAATTGTTGGTTAAATAAATAGGCATTGTTGAGCTAGGTAATAACTCAATTAGCAGCAAGAAACATGGAAAAAAAAATAAAAATGGCAAAGAACATAGCTTGTTATCAAAAATCTGCTATGCTGTCAAAATTTACTATTTTTTTCTCCATGCAGTTGCTGTTTTTTTTTTTTTTTTTTTTCAAGTTTCTAGCTTGA

mRNA sequence

ATGTCTACCAAAAGTTCAAGCGGTTCTGAGTTGGAAAAATTCAACAATCCCTCATTGAACCAACTCCTTAATCAAATCACGAGCACAAAGCTTGAGAGGGGAAATTTTCTACTGTGGAAGACACTTGCTCTGCCCATTCTCAGAAGTTACAAACTCGAGGGTCATCTTTCCGGAAGTCCAGTTTCCACCAGGGCTCTTATTTCGCAGGTGCTCCTTGGGCTTGATGAAGAGTATAATCCTTTCGAGCTCATGTTCTATGAGAAACGATTGGAGCATCAAAATGCTGTGAAAACATCTAGCACCTTCAATCAAAGTGTGTCCGTGAATGCAGCCTTTAATCAAAATTTGAATGGGTCAAAACCTCCACTGAAATCCAATTTCAAGCAACAATTCAGTGGGCAACGAGGAAATGGAGGTAACAACATTGAAGGAAATGGTGGAAATCAAGGAAGAGGTTGTGCAGAATTTCGGGAAGGCATGGAGTCATGGGTTGTTGGAGCTGATTTTGAGAATATCGGACAGTTGGAGTTTCTAGCTTGA

Coding sequence (CDS)

ATGTCTACCAAAAGTTCAAGCGGTTCTGAGTTGGAAAAATTCAACAATCCCTCATTGAACCAACTCCTTAATCAAATCACGAGCACAAAGCTTGAGAGGGGAAATTTTCTACTGTGGAAGACACTTGCTCTGCCCATTCTCAGAAGTTACAAACTCGAGGGTCATCTTTCCGGAAGTCCAGTTTCCACCAGGGCTCTTATTTCGCAGGTGCTCCTTGGGCTTGATGAAGAGTATAATCCTTTCGAGCTCATGTTCTATGAGAAACGATTGGAGCATCAAAATGCTGTGAAAACATCTAGCACCTTCAATCAAAGTGTGTCCGTGAATGCAGCCTTTAATCAAAATTTGAATGGGTCAAAACCTCCACTGAAATCCAATTTCAAGCAACAATTCAGTGGGCAACGAGGAAATGGAGGTAACAACATTGAAGGAAATGGTGGAAATCAAGGAAGAGGTTGTGCAGAATTTCGGGAAGGCATGGAGTCATGGGTTGTTGGAGCTGATTTTGAGAATATCGGACAGTTGGAGTTTCTAGCTTGA

Protein sequence

MSTKSSSGSELEKFNNPSLNQLLNQITSTKLERGNFLLWKTLALPILRSYKLEGHLSGSPVSTRALISQVLLGLDEEYNPFELMFYEKRLEHQNAVKTSSTFNQSVSVNAAFNQNLNGSKPPLKSNFKQQFSGQRGNGGNNIEGNGGNQGRGCAEFREGMESWVVGADFENIGQLEFLA

Homology

[Close]

BLAST of CmUC03G061310 vs. NCBI nr
Match: XP_038887015.1 (uncharacterized protein LOC120077182 [Benincasa hispida])

HSP 1 Score: 82.4 bits (202), Expect = 4.3e-12
Identity = 48/77 (62.34%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 1  MSTKSSSGSELEKFNNPSLNQLLNQITSTKLERGNFLLWKTLALPILRSYKLEGHLSG-- 60
          ++T SS G E  KF+ P LNQLLNQIT+TKLERG F+LWKTLALPILR YKLE HLSG  
Sbjct: 5  IATGSSIG-ESTKFSTPPLNQLLNQITNTKLERGYFMLWKTLALPILRGYKLERHLSGTK 64

Query: 61 --SPVSTRALISQVLLG 74
            SP+ T + I  +  G
Sbjct: 65 ICSPMFTVSTIPSIETG 80

[Close]

BLAST of CmUC03G061310 vs. NCBI nr
Match: XP_038896600.1 (uncharacterized protein LOC120084860 [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 5.6e-12
Identity = 47/90 (52.22%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 57  SGSPVSTRALISQVLLGLDEEYN-----------------PFELMFYEKRLEHQNAVKTS 116
           + SPVSTR LISQVLLGLDEEYN                   EL+ YEKRLEHQN++K  
Sbjct: 68  TSSPVSTRTLISQVLLGLDEEYNLVVVGIQGKPGISWLDMQSELLTYEKRLEHQNSIKIH 127

Query: 117 STFNQSVSVNAAFNQNLNGSKPPLKSNFKQ 130
           STF Q   VN AF+ NLNG KP    +F +
Sbjct: 128 STFAQQPFVNVAFSMNLNGGKPYFNPSFNE 157

[Close]

BLAST of CmUC03G061310 vs. NCBI nr
Match: KAA0060627.1 (Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 3.6e-11
Identity = 36/58 (62.07%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 14 FNNPSLNQLLNQITSTKLERGNFLLWKTLALPILRSYKLEGHLSG-SPVSTRALISQV 71
          F+NP LNQLLNQ++S KL+RGN+LLWKTLALPI++SYK EGHL+G +P   + + +Q+
Sbjct: 15 FSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFITNQI 72

[Close]

BLAST of CmUC03G061310 vs. NCBI nr
Match: TYK02246.1 (uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 3.6e-11
Identity = 36/58 (62.07%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 14 FNNPSLNQLLNQITSTKLERGNFLLWKTLALPILRSYKLEGHLSG-SPVSTRALISQV 71
          F+NP LNQLLNQ++S KL+RGN+LLWKTLALPI++SYK EGHL+G +P   + + +Q+
Sbjct: 15 FSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFITNQI 72

[Close]

BLAST of CmUC03G061310 vs. NCBI nr
Match: XP_038882253.1 (uncharacterized protein LOC120073479 [Benincasa hispida])

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-10
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 13 KFNNPSLNQLLNQITSTKLERGNFLLWKTLALPILRSYKLEGHLSGSPV 62
          KF+ P LNQLLNQITS KLERG F+LWKTL+LPIL+ Y+LEGHLS + V
Sbjct: 17 KFSTPPLNQLLNQITSIKLERGTFMLWKTLSLPILKGYRLEGHLSRTKV 65

[Close]

BLAST of CmUC03G061310 vs. ExPASy TrEMBL
Match: A0A5D3BVJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00450 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-11
Identity = 36/58 (62.07%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 14 FNNPSLNQLLNQITSTKLERGNFLLWKTLALPILRSYKLEGHLSG-SPVSTRALISQV 71
          F+NP LNQLLNQ++S KL+RGN+LLWKTLALPI++SYK EGHL+G +P   + + +Q+
Sbjct: 15 FSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFITNQI 72

[Close]

BLAST of CmUC03G061310 vs. ExPASy TrEMBL
Match: A0A5A7V1E0 (Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005070 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-11
Identity = 36/58 (62.07%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 14 FNNPSLNQLLNQITSTKLERGNFLLWKTLALPILRSYKLEGHLSG-SPVSTRALISQV 71
          F+NP LNQLLNQ++S KL+RGN+LLWKTLALPI++SYK EGHL+G +P   + + +Q+
Sbjct: 15 FSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFITNQI 72

[Close]

BLAST of CmUC03G061310 vs. ExPASy TrEMBL
Match: A0A5A7VCS1 (Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00430 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.3e-10
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 14 FNNPSLNQLLNQITSTKLERGNFLLWKTLALPILRSYKLEGHLSG 59
          F NP LNQ+LNQ+T+ KL+R N+LLWKTLALPIL+ YKLEGHL+G
Sbjct: 19 FTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTG 63

[Close]

BLAST of CmUC03G061310 vs. ExPASy TrEMBL
Match: A0A5A7U2Z6 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00960 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.4e-10
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 14 FNNPSLNQLLNQITSTKLERGNFLLWKTLALPILRSYKLEGHLS 58
          F NP LNQ+LNQ+T+ KL+RGN+LLW+TLALPIL+ YKL+GHLS
Sbjct: 17 FTNPPLNQILNQLTTVKLDRGNYLLWETLALPILKGYKLDGHLS 60

[Close]

BLAST of CmUC03G061310 vs. ExPASy TrEMBL
Match: A0A5D3BCH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G00140 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 14 FNNPSLNQLLNQITSTKLERGNFLLWKTLALPILRSYKLEGHLSG 59
          F+NP LNQ+LNQ+ + KL+R N+LLWKTLALPIL+ YKLEGHL+G
Sbjct: 18 FSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTG 62

The following BLAST results are available for this feature:

BLAST of CmUC03G061310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887015.1	4.3e-12	62.34	uncharacterized protein LOC120077182 [Benincasa hispida]	[more]
XP_038896600.1	5.6e-12	52.22	uncharacterized protein LOC120084860 [Benincasa hispida]	[more]
KAA0060627.1	3.6e-11	62.07	Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa]	[more]
TYK02246.1	3.6e-11	62.07	uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]	[more]
XP_038882253.1	2.4e-10	73.47	uncharacterized protein LOC120073479 [Benincasa hispida]	[more]

BLAST of CmUC03G061310 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC03G061310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BVJ1	1.8e-11	62.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V1E0	1.8e-11	62.07	Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa ...	[more]
A0A5A7VCS1	3.3e-10	73.33	Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. m...	[more]
A0A5A7U2Z6	7.4e-10	72.73	UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3BCH9	1.3e-09	71.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmUC03G061310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC03G061310.1	CmUC03G061310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity