CmUC03G060920 (gene) Watermelon (USVL531) v1

Overview
NameCmUC03G060920
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Descriptionzf-RVT domain-containing protein
LocationCmU531Chr03: 21184090 .. 21184771 (-)
RNA-Seq ExpressionCmUC03G060920
SyntenyCmUC03G060920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTATAGGGGAGGACTCAATTTCTTTGAATCCTATCCTACAAAATTTGGGATCGAGCTTGGTGATGAAAGAGGGAGATTCAATAGCTACTCAGAAAGATTATCAACTAGCTGAGACAAATTCTTCAGGTAAAAAACAGAGGACTTGGAAAAGAAAGGCGAGATTGGAAAGTAGGGATGTTGACCAAAGAATGGAATCTTACAATTTTCTAAAGAAAAAAGGGGAGACCTTTCCAGATTTGATGACTTCAAAAAGAAAGAGGGAAAACTCTCTTCCAATTCCTTTAGACACGCTTGACAAGCTAAAGGCAGGGCTGTAAAGTCAGCTCTGCCCTGAACCATGAGATTCATTTGTTGGAATGCTCAAGGATTGGGAAATCCGAGGGCATTCCATGCCTTGTCTGACCTCGTTAGGATAAGACATCCTTCAATCTTGTTTCTTTCGGAGACTAAATGCGGAGATAAGGTTTCAGGTAAATTGAAGAAAGTTGGTAACTTTGCTGGCTGTTTAACTATGAACAACATGGTTTAAGTCTTCTTTGGATAGATAAGGTTGATTTAAGAGTAACCTCTTACTCTTAGAACCATATAGATTCAGAAGTTGTTTGGAAAGGTTCTGAATGGAGATTTACTGGTTTATACGGTCATCCGGAGAACTTCAGAAAAGATCTAACGTTGTAG

mRNA sequence

ATGACTATAGGGGAGGACTCAATTTCTTTGAATCCTATCCTACAAAATTTGGGATCGAGCTTGGTGATGAAAGAGGGAGATTCAATAGCTACTCAGAAAGATTATCAACTAGCTGAGACAAATTCTTCAGGATTGGGAAATCCGAGGGCATTCCATGCCTTGTCTGACCTCGTTAGGATAAGACATCCTTCAATCTTGTTTCTTTCGGAGACTAAATGCGGAGATAAGGTTTCAGATTCAGAAGTTGTTTGGAAAGGTTCTGAATGGAGATTTACTGGTTTATACGGTCATCCGGAGAACTTCAGAAAAGATCTAACGTTGTAG

Coding sequence (CDS)

ATGACTATAGGGGAGGACTCAATTTCTTTGAATCCTATCCTACAAAATTTGGGATCGAGCTTGGTGATGAAAGAGGGAGATTCAATAGCTACTCAGAAAGATTATCAACTAGCTGAGACAAATTCTTCAGGATTGGGAAATCCGAGGGCATTCCATGCCTTGTCTGACCTCGTTAGGATAAGACATCCTTCAATCTTGTTTCTTTCGGAGACTAAATGCGGAGATAAGGTTTCAGATTCAGAAGTTGTTTGGAAAGGTTCTGAATGGAGATTTACTGGTTTATACGGTCATCCGGAGAACTTCAGAAAAGATCTAACGTTGTAG

Protein sequence

MTIGEDSISLNPILQNLGSSLVMKEGDSIATQKDYQLAETNSSGLGNPRAFHALSDLVRIRHPSILFLSETKCGDKVSDSEVVWKGSEWRFTGLYGHPENFRKDLTL
Homology
BLAST of CmUC03G060920 vs. NCBI nr
Match: KAG2725981.1 (hypothetical protein I3760_01G090600 [Carya illinoinensis])

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 37/95 (38.95%), Postives = 45/95 (47.37%), Query Frame = 0

Query: 41  NSSGLGNPRAFHALSDLVRIRHPSILFLSETK----------------------CGDKVS 100
           NS GLGNPR   AL DLVR   P +LFL ETK                      C  +  
Sbjct: 7   NSRGLGNPRGVRALCDLVRREDPVVLFLMETKLTSRQMERVRVRVGFECCFAVDCDGRKG 66

Query: 101 DSEVVWK-------GSEWRFTGLYGHPENFRKDLT 107
              ++WK       G EW+FTGLYGHPE  +++ T
Sbjct: 67  GVALLWKKEIKNDGGLEWKFTGLYGHPETEKREET 101

BLAST of CmUC03G060920 vs. NCBI nr
Match: KAF5449841.1 (hypothetical protein F2P56_030246 [Juglans regia])

HSP 1 Score: 53.9 bits (128), Expect = 9.8e-04
Identity = 33/111 (29.73%), Postives = 44/111 (39.64%), Query Frame = 0

Query: 41  NSSGLGNPRAFHALSDLVRIRHPSILFLSETK----------------------CGDKVS 100
           NSSGLGNP+   AL DL+    P ++FL ETK                      C  +  
Sbjct: 7   NSSGLGNPQGIRALRDLITREDPDLVFLQETKMRAQAMTTCKYKFGFVNCFFVDCVGRSG 66

Query: 101 DSEVVWKG-----------------------SEWRFTGLYGHPENFRKDLT 107
              ++WK                        +EWRFTG+YGHP+   + LT
Sbjct: 67  GLSLLWKREISVSISSFSRYHIDACIQESDLAEWRFTGVYGHPDASNRYLT 117

BLAST of CmUC03G060920 vs. ExPASy TrEMBL
Match: A0A2N9HAZ4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36947 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.3e-05
Identity = 32/61 (52.46%), Postives = 37/61 (60.66%), Query Frame = 0

Query: 41  NSSGLGNPRAFHALSDLVRIRHPSILFLSETKCGDKVSDSEVVWKGS--EWRFTGLYGHP 100
           N  GLGN R  H L+ +VR + PS++FL ET   DK    EVV  GS  EWRFTG Y  P
Sbjct: 528 NYHGLGNRRTLHELASIVREKDPSVMFLYETWLEDKW--MEVVNAGSLDEWRFTGFYVAP 586

BLAST of CmUC03G060920 vs. ExPASy TrEMBL
Match: A0A2N9FRF7 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17562 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 28/77 (36.36%), Postives = 41/77 (53.25%), Query Frame = 0

Query: 37  LAETNSSGLGNPRAFHALSDLVRIRHPSILFLSETK--------CGDKVSDSEVVWKGS- 96
           L   N  GLGNP+    L DLV+   P ++FL+ET+           K+ ++ ++  G  
Sbjct: 506 LLSLNCRGLGNPQTVRELHDLVKREDPRVVFLTETRLELKNLEFLQVKLGNAWIIGGGQI 565

Query: 97  -EWRFTGLYGHPENFRK 104
            EW FTG YGHPE  ++
Sbjct: 566 REWHFTGFYGHPETAKR 582

BLAST of CmUC03G060920 vs. ExPASy TrEMBL
Match: A0A2N9EYW2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7920 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 36/114 (31.58%), Postives = 51/114 (44.74%), Query Frame = 0

Query: 1   MTIGEDSISLNPILQNLGSSLVMKEGDSIATQKDYQLAETNSSGLGNPRAFHALSDLVRI 60
           M +GE  + L PI       +V  E   +A     +L   N  GLGNPR   +L  LV+ 
Sbjct: 320 MDLGE--VELAPI------GVVTGEDQKVAVPVSMKLLSWNCQGLGNPRTVLSLCRLVKS 379

Query: 61  RHPSILFLSETKCGD-----------KVSDSEVVWKGSEWRFTGLYGHPENFRK 104
           + P +LFL +TK G+            + +  +    S W  TG YG P+  RK
Sbjct: 380 KDPQVLFLMDTKLGEVTLEIRNFTTHHIDNHILHGDDSRWTLTGFYGRPKEQRK 425

BLAST of CmUC03G060920 vs. ExPASy TrEMBL
Match: A0A2N9FH20 (zf-RVT domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18009 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 33/116 (28.45%), Postives = 53/116 (45.69%), Query Frame = 0

Query: 5   EDSISLNPILQNLGSSLVMKEGDSIATQKDYQLAETNSSGLGNPRAFHALSDLVRIRHPS 64
           ED +    +  N  S +  K G +            N  GLGNP     L+++VR++ PS
Sbjct: 152 EDQLRAIDMALNYTSVIPEKSGTAGTPPNPMSCLSWNCRGLGNPGTVQELANMVRVKDPS 211

Query: 65  ILFLSETKCGDKVSD------------SEVVWKGSE--WRFTGLYGHPENFRKDLT 107
            +F+ ET   ++  +              ++ +GSE  WR TG+YG PE  R++ T
Sbjct: 212 AIFVMETWSHEEYLEKVTIKSYSSSHIDAIIKEGSEDAWRLTGIYGAPEAQRREET 267

BLAST of CmUC03G060920 vs. ExPASy TrEMBL
Match: A0A2N9FA13 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11593 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 26/71 (36.62%), Postives = 44/71 (61.97%), Query Frame = 0

Query: 41  NSSGLGNPRAFHALSDLVRIRHPSILFLSETKCGDKVSDSE---VVWKGSE--WRFTGLY 100
           N  GLGNP   H L++LV ++  S++FL ET   +  S +    ++ +G++  WR TG+Y
Sbjct: 824 NCRGLGNPGTVHELANLVWVKASSVVFLMETWLTEDYSCNHIDAIIKQGTDDAWRLTGVY 883

Query: 101 GHPENFRKDLT 107
           G P+  ++D+T
Sbjct: 884 GVPKTHKRDVT 894

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG2725981.11.9e-0738.95hypothetical protein I3760_01G090600 [Carya illinoinensis][more]
KAF5449841.19.8e-0429.73hypothetical protein F2P56_030246 [Juglans regia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2N9HAZ47.3e-0552.46Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36947 PE=4 SV=1[more]
A0A2N9FRF71.2e-0436.36Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9EYW21.2e-0431.58Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7920 PE=4 SV=1[more]
A0A2N9FH202.8e-0428.45zf-RVT domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18009 P... [more]
A0A2N9FA133.6e-0436.62Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11593 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC03G060920.1CmUC03G060920.1mRNA