CmUC03G060420 (gene) Watermelon (USVL531) v1

Overview
NameCmUC03G060420
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionDefensin-like protein
LocationCmU531Chr03: 19169325 .. 19169802 (-)
RNA-Seq ExpressionCmUC03G060420
SyntenyCmUC03G060420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCCATCTCCTTCTCCGCCATTGTTCTTGTGGTTTTACTCATCTTCAATGGTACCCTTATTTAATTTTATTATTTCTTAGAATTTCCTCATCCCATTAATAATTTGATTTTTTTTTTTGGGTTTTTTTTTTTTTTTTGTCTTTTTAATTGATTTTATGGTAAAAATATATCCGATTTATTTAATTGTTGACCTAAAAAAAAAAACAATAAGTTTCAATGCTTAAAAAACTTTATGATTTATTTACTTACATATTAGATATTGAGCTTGGTGTATGGATTTTGTGAAAGCAGGAGAAACAATGATGAGAAGTGTTGAAGGTGAAGGGTTATGTGAGAAGGCATTGCACGGTGGAGGGTGCAAAGATGCTGAGTGTATGAGTGGCTGCAAAGCCCAATTTGGAGCAACGGCAATAGGATTGTGCTTTTTCTTTCGAACGCCAAGTGATACTTGTCTCTGTCGCTATCCTTGTTGA

mRNA sequence

ATGAAGTCCATCTCCTTCTCCGCCATTGTTCTTGTGGTTTTACTCATCTTCAATGGAGAAACAATGATGAGAAGTGTTGAAGGTGAAGGGTTATGTGAGAAGGCATTGCACGGTGGAGGGTGCAAAGATGCTGAGTGTATGAGTGGCTGCAAAGCCCAATTTGGAGCAACGGCAATAGGATTGTGCTTTTTCTTTCGAACGCCAAGTGATACTTGTCTCTGTCGCTATCCTTGTTGA

Coding sequence (CDS)

ATGAAGTCCATCTCCTTCTCCGCCATTGTTCTTGTGGTTTTACTCATCTTCAATGGAGAAACAATGATGAGAAGTGTTGAAGGTGAAGGGTTATGTGAGAAGGCATTGCACGGTGGAGGGTGCAAAGATGCTGAGTGTATGAGTGGCTGCAAAGCCCAATTTGGAGCAACGGCAATAGGATTGTGCTTTTTCTTTCGAACGCCAAGTGATACTTGTCTCTGTCGCTATCCTTGTTGA

Protein sequence

MKSISFSAIVLVVLLIFNGETMMRSVEGEGLCEKALHGGGCKDAECMSGCKAQFGATAIGLCFFFRTPSDTCLCRYPC
Homology
BLAST of CmUC03G060420 vs. NCBI nr
Match: KGN61300.1 (hypothetical protein Csa_006301 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 2.6e-30
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0

Query: 1  MKSISFSAIVLVVLLIFNGET-MMRSVEGEGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LL+F+GET MMRSVEGEGLCEKALHGGGCKDAEC SGCK  FGA A+
Sbjct: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

BLAST of CmUC03G060420 vs. NCBI nr
Match: KAA0040274.1 (Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 2.6e-30
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0

Query: 1  MKSISFSAIVLVVLLIFNGETMMRSVEG-EGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LLIFNGETMM+SVEG  GLC+KALHGGGCKDAECMSGCKA FG  A+
Sbjct: 1  MKSVSFSAILLALLLIFNGETMMKSVEGVGGLCQKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

BLAST of CmUC03G060420 vs. NCBI nr
Match: KAA0061621.1 (Defensin-like protein [Cucumis melo var. makuwa] >TYK19754.1 Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 4.4e-30
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0

Query: 1  MKSISFSAIVLVVLLIFNGETMMRSVEG-EGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LLIF+GETMM+SVEG  GLCEKALHGGGCKDAECMSGCKA FG  A+
Sbjct: 1  MKSVSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

BLAST of CmUC03G060420 vs. NCBI nr
Match: KAA0062516.1 (Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 5.8e-30
Identity = 67/79 (84.81%), Postives = 72/79 (91.14%), Query Frame = 0

Query: 1  MKSISFSAIVLVVLLIFNGETMMRSVEG-EGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MK +SFSAI+L +LLIFNGETMM+SVEG  GLCEKALHGGGCKDAECMSGCKA FG  A+
Sbjct: 1  MKFVSFSAILLALLLIFNGETMMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

BLAST of CmUC03G060420 vs. NCBI nr
Match: KAA0062251.1 (Defensin-like protein [Cucumis melo var. makuwa] >TYK27293.1 Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 139.8 bits (351), Expect = 9.9e-30
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0

Query: 1  MKSISFSAIVLVVLLIFNGETMMRSVEG-EGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MKSISFSAI+L +LLIF+GETMM+SVEG  GLCEKALHGGGCKDAEC+SGCKA FG  A+
Sbjct: 1  MKSISFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDAECISGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

BLAST of CmUC03G060420 vs. ExPASy TrEMBL
Match: A0A5A7T9W7 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2379G00030 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-30
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0

Query: 1  MKSISFSAIVLVVLLIFNGETMMRSVEG-EGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LLIFNGETMM+SVEG  GLC+KALHGGGCKDAECMSGCKA FG  A+
Sbjct: 1  MKSVSFSAILLALLLIFNGETMMKSVEGVGGLCQKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

BLAST of CmUC03G060420 vs. ExPASy TrEMBL
Match: A0A0A0LH75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G077550 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-30
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0

Query: 1  MKSISFSAIVLVVLLIFNGET-MMRSVEGEGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LL+F+GET MMRSVEGEGLCEKALHGGGCKDAEC SGCK  FGA A+
Sbjct: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

BLAST of CmUC03G060420 vs. ExPASy TrEMBL
Match: A0A5A7V7B1 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3861G00090 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.2e-30
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0

Query: 1  MKSISFSAIVLVVLLIFNGETMMRSVEG-EGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LLIF+GETMM+SVEG  GLCEKALHGGGCKDAECMSGCKA FG  A+
Sbjct: 1  MKSVSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

BLAST of CmUC03G060420 vs. ExPASy TrEMBL
Match: A0A5A7V7X3 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold7126G00070 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.8e-30
Identity = 67/79 (84.81%), Postives = 72/79 (91.14%), Query Frame = 0

Query: 1  MKSISFSAIVLVVLLIFNGETMMRSVEG-EGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MK +SFSAI+L +LLIFNGETMM+SVEG  GLCEKALHGGGCKDAECMSGCKA FG  A+
Sbjct: 1  MKFVSFSAILLALLLIFNGETMMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

BLAST of CmUC03G060420 vs. ExPASy TrEMBL
Match: A0A5A7V978 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold244G00660 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.8e-30
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0

Query: 1  MKSISFSAIVLVVLLIFNGETMMRSVEG-EGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MKSISFSAI+L +LLIF+GETMM+SVEG  GLCEKALHGGGCKDAEC+SGCKA FG  A+
Sbjct: 1  MKSISFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDAECISGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN61300.12.6e-3084.81hypothetical protein Csa_006301 [Cucumis sativus][more]
KAA0040274.12.6e-3084.81Defensin-like protein [Cucumis melo var. makuwa][more]
KAA0061621.14.4e-3084.81Defensin-like protein [Cucumis melo var. makuwa] >TYK19754.1 Defensin-like prote... [more]
KAA0062516.15.8e-3084.81Defensin-like protein [Cucumis melo var. makuwa][more]
KAA0062251.19.9e-3084.81Defensin-like protein [Cucumis melo var. makuwa] >TYK27293.1 Defensin-like prote... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T9W71.3e-3084.81Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23... [more]
A0A0A0LH751.3e-3084.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G077550 PE=3 SV=1[more]
A0A5A7V7B12.2e-3084.81Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A5A7V7X32.8e-3084.81Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold71... [more]
A0A5A7V9784.8e-3084.81Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851Defensin-like proteinPFAMPF07333SLR1-BPcoord: 30..78
e-value: 8.7E-8
score: 32.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC03G060420.1CmUC03G060420.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050832 defense response to fungus
biological_process GO:0031640 killing of cells of other organism