CmUC03G059850 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC03G059850
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	UPF0505 protein C16orf62 homolog
Location	CmU531Chr03: 17665735 .. 17667177 (+)
RNA-Seq Expression	CmUC03G059850
Synteny	CmUC03G059850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATGATGCCATTAATGCTTCTCGGGTACCTTCATCCCATGTTTCTGTGAGTTTTTCGGGGAAGAGCATGCCAACTAGACCGTTTGGTGGGCGTGAGGAGAAGCTTTCCGAAAAGTCAGCTACTTTGATGAAAAGGAAAAATGACGGCTATTTTCTTGATTGCACCAATAGCATTAAAAAGAAATCAAATTTCGAAGAGGTTGTTGGCTTTCCAACCGAAGGAATCGAGGAGGCTATTGGCATTCCAACCGAGGAAATCAAGGCTAGCATTGAAGGCAATTATGATCTCACTAATCAACCACCTGATTTATTAGGCAAAGATCCTTCCCACAATAACGTCAACCACTTTATTGCTTGGAATAATAACTTTAAAAGTAATTCAGCTTTTAATAGGGTTGTTGATATCCCATCCGAAAATTTCGAGGTTAGCATTAAATTTTATTCCCACAAACCAACCACTAGATTTATTAGGCAAAGATCCTCCCCTTCCCAAGGATTAATTAATTTTAAGAAGATGAAGAGTCAAAGTGGCTCCTCATTGGATTATTTGAAATTATTAAAGCCTTTTTCCTCTTCATTTCTCAAGAAAAAAAAGCTCCATTAGTTTGGCCGTGGCTGCTTCTTCCAACCCCGATCTCTTGGAGTGTTGCTGCAACCGAGCCCAAATTCTGTCTCACCTGATCAGGTTTGAAAACCCCTCTTCTCCTCCTTTTCTCTTCAAGAAATCCACCCTTACCTTGCCTAATTCAAATTCTACTTTTTCGAGAAGTACTCGTTGCATCTCAGAAGACCCTAATCTAAGAAATGAAGAAGATTCCGACATTGGTTCAATAGCAAGTGTTAGCAGCGAGGATTTAGATGATATTGAAGCATTAGATCATCACGAGGTTTCGGATCAACCTGAAGTTATTGGAGAAGATATTAATACCTTGTTCTCTCAGAATGAAGCTCCGAACGAATTAGAATTCAAAAATCATTCTTTCATTCCCCCTAATCATCCGGAATTGCCGGCACATTTGGCATCCTTCGTTGAAGAATGTGGTCTTGTCTTTGGATAGACCATGAAGCCTTGCGAAAGTCTGTTCGTAGCCTTAATTAATATCATTTATAACGTGTATGAGGACTACAAATCGGACCTAGGATGCTTATGTCTTCTGCTTGGTCTCTTGGTGTTTCGAAGTTTCGAAGGTTGTTGACGTTTTAGGTTGCCAAGCTTCTGAAGGATGTGTGTGTTTGGCAATTTTACCCCATACTTTTGGTTCAAGTCACGGATATTTTGGATATACTTGGAAAGCTAGTGTGGATCACTTCAAGAGAAAAGCTGAGTTTCATTGAAGCTGGGGTTTGTTTTCGCCACTCTTATCTAATTACTGTTTGGATTCATGGTGTTTTGGAGGTTATTTGGAAGTCTTATCGATCAAAGAAGGGGTTGCAATAG

mRNA sequence

ATGGAAAATGATGCCATTAATGCTTCTCGGGTACCTTCATCCCATGTTTCTGTGAGTTTTTCGGGGAAGAGCATGCCAACTAGACCGTTTGGTGGGCGTGAGGAGAAGCTTTCCGAAAAGTCAGCTACTTTGATGAAAAGGAAAAATGACGGCTATTTTCTTGATTGCACCAATAGCATTAAAAAGAAATCAAATTTCGAAGAGGTTGTTGGCTTTCCAACCGAAGGAATCGAGGAGGCTATTGGCATTCCAACCGAGGAAATCAAGGCTAGCATTGAAGGCAATTATGATCTCACTAATCAACCACCTGATTTATTAGGCAAAGATCCTTCCCACAATAACGTCAACCACTTTATTGCTTGGAATAATAACTTTAAAAGTAATTCAGCTTTTAATAGGGTTGTTGATATCCCATCCGAAAATTTCGAGGTTGCCAAGCTTCTGAAGGATGTGTGTGTTTGGCAATTTTACCCCATACTTTTGGTTCAAGTCACGGATATTTTGGATATACTTGGAAAGCTAGTGTGGATCACTTCAAGAGAAAAGCTGAGTTTCATTGAAGCTGGGGTTTGTTTTCGCCACTCTTATCTAATTACTGTTTGGATTCATGGTGTTTTGGAGGTTATTTGGAAGTCTTATCGATCAAAGAAGGGGTTGCAATAG

Coding sequence (CDS)

ATGGAAAATGATGCCATTAATGCTTCTCGGGTACCTTCATCCCATGTTTCTGTGAGTTTTTCGGGGAAGAGCATGCCAACTAGACCGTTTGGTGGGCGTGAGGAGAAGCTTTCCGAAAAGTCAGCTACTTTGATGAAAAGGAAAAATGACGGCTATTTTCTTGATTGCACCAATAGCATTAAAAAGAAATCAAATTTCGAAGAGGTTGTTGGCTTTCCAACCGAAGGAATCGAGGAGGCTATTGGCATTCCAACCGAGGAAATCAAGGCTAGCATTGAAGGCAATTATGATCTCACTAATCAACCACCTGATTTATTAGGCAAAGATCCTTCCCACAATAACGTCAACCACTTTATTGCTTGGAATAATAACTTTAAAAGTAATTCAGCTTTTAATAGGGTTGTTGATATCCCATCCGAAAATTTCGAGGTTGCCAAGCTTCTGAAGGATGTGTGTGTTTGGCAATTTTACCCCATACTTTTGGTTCAAGTCACGGATATTTTGGATATACTTGGAAAGCTAGTGTGGATCACTTCAAGAGAAAAGCTGAGTTTCATTGAAGCTGGGGTTTGTTTTCGCCACTCTTATCTAATTACTGTTTGGATTCATGGTGTTTTGGAGGTTATTTGGAAGTCTTATCGATCAAAGAAGGGGTTGCAATAG

Protein sequence

MENDAINASRVPSSHVSVSFSGKSMPTRPFGGREEKLSEKSATLMKRKNDGYFLDCTNSIKKKSNFEEVVGFPTEGIEEAIGIPTEEIKASIEGNYDLTNQPPDLLGKDPSHNNVNHFIAWNNNFKSNSAFNRVVDIPSENFEVAKLLKDVCVWQFYPILLVQVTDILDILGKLVWITSREKLSFIEAGVCFRHSYLITVWIHGVLEVIWKSYRSKKGLQ

Homology

[Close]

BLAST of CmUC03G059850 vs. NCBI nr
Match: KAG6607792.1 (VPS35 endosomal protein sorting factor-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.5 bits (140), Expect = 8.2e-05
Identity = 42/113 (37.17%), Postives = 56/113 (49.56%), Query Frame = 0


Query: 85  TEEIKASIEGNYDLTNQPPDLLGKDPSHNNVNHF-----IAWNNNFKSNSAFNRVVDIPS 144
           T++    IE + ++T     ++ +    N +  F      AWN       A +RV  +  
Sbjct: 125 TDKHLEEIEDHQNITENEVKVVTRQDYINRLREFKDDLVRAWN-------ASDRVTSL-K 184

Query: 145 ENFEVAKLLKDVCVWQFYPILLVQVTDILDILGKLVWITSREKLSFIEAGVCF 193
            + +VAKLLKD  V QFYP L V VTDILD+LG  VW   R K  F E G  F
Sbjct: 185 ISVKVAKLLKDTSVLQFYPTLFVLVTDILDMLGNFVWDRIRSKAEFTEDGARF 229

[Close]

BLAST of CmUC03G059850 vs. NCBI nr
Match: KAG7037366.1 (hypothetical protein SDJN02_00991 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.5 bits (140), Expect = 8.2e-05
Identity = 42/113 (37.17%), Postives = 56/113 (49.56%), Query Frame = 0


Query: 85  TEEIKASIEGNYDLTNQPPDLLGKDPSHNNVNHF-----IAWNNNFKSNSAFNRVVDIPS 144
           T++    IE + ++T     ++ +    N +  F      AWN       A +RV  +  
Sbjct: 125 TDKHLEEIEDHQNITENEVKVVTRQDYINRLREFKDDLVRAWN-------ASDRVTSL-K 184

Query: 145 ENFEVAKLLKDVCVWQFYPILLVQVTDILDILGKLVWITSREKLSFIEAGVCF 193
            + +VAKLLKD  V QFYP L V VTDILD+LG  VW   R K  F E G  F
Sbjct: 185 ISVKVAKLLKDTSVLQFYPTLFVLVTDILDMLGNFVWDRIRNKAEFTEDGARF 229

[Close]

BLAST of CmUC03G059850 vs. NCBI nr
Match: XP_022940977.1 (UPF0505 protein C16orf62 homolog [Cucurbita moschata])

HSP 1 Score: 58.5 bits (140), Expect = 8.2e-05
Identity = 42/113 (37.17%), Postives = 56/113 (49.56%), Query Frame = 0


Query: 85  TEEIKASIEGNYDLTNQPPDLLGKDPSHNNVNHF-----IAWNNNFKSNSAFNRVVDIPS 144
           T++    IE + ++T     ++ +    N +  F      AWN       A +RV  +  
Sbjct: 125 TDKHLEEIEDHQNITENEVKVVTRQDYINRLREFKDDLVRAWN-------ASDRVTSL-K 184

Query: 145 ENFEVAKLLKDVCVWQFYPILLVQVTDILDILGKLVWITSREKLSFIEAGVCF 193
            + +VAKLLKD  V QFYP L V VTDILD+LG  VW   R K  F E G  F
Sbjct: 185 ISVKVAKLLKDTSVLQFYPTLFVLVTDILDMLGNFVWDRIRSKAEFTEDGARF 229

[Close]

BLAST of CmUC03G059850 vs. NCBI nr
Match: XP_023525123.1 (UPF0505 protein C16orf62 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-04
Identity = 36/73 (49.32%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 120 AWNNNFKSNSAFNRVVDIPSENFEVAKLLKDVCVWQFYPILLVQVTDILDILGKLVWITS 179
           AWN       A +RV  +   + +VAKLLKD  V QFYP L V VTDILD+LG  VW   
Sbjct: 165 AWN-------ASDRVTSL-KISVKVAKLLKDTSVLQFYPTLFVLVTDILDMLGNFVWDRI 224

Query: 180 REKLSFIEAGVCF 193
           R K  F E G  F
Sbjct: 225 RSKAEFTEDGARF 229

[Close]

BLAST of CmUC03G059850 vs. NCBI nr
Match: XP_008447725.1 (PREDICTED: UPF0505 protein C16orf62 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-04
Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 141 NFEVAKLLKDVCVWQFYPILLVQVTDILDILGKLVWITSREKLSFIEAG 190
           + +V KLLKD CV QFYP L V VTDILD+LG  VW   + K  F E G
Sbjct: 177 SMKVTKLLKDTCVLQFYPTLFVLVTDILDMLGNFVWDRIKRKAEFTEDG 225

[Close]

BLAST of CmUC03G059850 vs. ExPASy TrEMBL
Match: A0A6J1FL44 (UPF0505 protein C16orf62 homolog OS=Cucurbita moschata OX=3662 GN=LOC111446399 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-05
Identity = 42/113 (37.17%), Postives = 56/113 (49.56%), Query Frame = 0


Query: 85  TEEIKASIEGNYDLTNQPPDLLGKDPSHNNVNHF-----IAWNNNFKSNSAFNRVVDIPS 144
           T++    IE + ++T     ++ +    N +  F      AWN       A +RV  +  
Sbjct: 125 TDKHLEEIEDHQNITENEVKVVTRQDYINRLREFKDDLVRAWN-------ASDRVTSL-K 184

Query: 145 ENFEVAKLLKDVCVWQFYPILLVQVTDILDILGKLVWITSREKLSFIEAGVCF 193
            + +VAKLLKD  V QFYP L V VTDILD+LG  VW   R K  F E G  F
Sbjct: 185 ISVKVAKLLKDTSVLQFYPTLFVLVTDILDMLGNFVWDRIRSKAEFTEDGARF 229

[Close]

BLAST of CmUC03G059850 vs. ExPASy TrEMBL
Match: A0A1S3BI26 (UPF0505 protein C16orf62 homolog isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490132 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.8e-05
Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 141 NFEVAKLLKDVCVWQFYPILLVQVTDILDILGKLVWITSREKLSFIEAG 190
           + +V KLLKD CV QFYP L V VTDILD+LG  VW   + K  F E G
Sbjct: 52  SMKVTKLLKDTCVLQFYPTLFVLVTDILDMLGNFVWDRIKRKAEFTEDG 100

[Close]

BLAST of CmUC03G059850 vs. ExPASy TrEMBL
Match: A0A5A7SG80 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold124G00380 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.8e-05
Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 141 NFEVAKLLKDVCVWQFYPILLVQVTDILDILGKLVWITSREKLSFIEAG 190
           + +V KLLKD CV QFYP L V VTDILD+LG  VW   + K  F E G
Sbjct: 177 SMKVTKLLKDTCVLQFYPTLFVLVTDILDMLGNFVWDRIKRKAEFTEDG 225

[Close]

BLAST of CmUC03G059850 vs. ExPASy TrEMBL
Match: A0A5D3DHC0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00790 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.8e-05
Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 141 NFEVAKLLKDVCVWQFYPILLVQVTDILDILGKLVWITSREKLSFIEAG 190
           + +V KLLKD CV QFYP L V VTDILD+LG  VW   + K  F E G
Sbjct: 194 SMKVTKLLKDTCVLQFYPTLFVLVTDILDMLGNFVWDRIKRKAEFTEDG 242

[Close]

BLAST of CmUC03G059850 vs. ExPASy TrEMBL
Match: A0A0A0K5F0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G212680 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.8e-05
Identity = 28/47 (59.57%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 143 EVAKLLKDVCVWQFYPILLVQVTDILDILGKLVWITSREKLSFIEAG 190
           +V KLLKD CV QFYP L V VTDILD+LG  VW   + K  F E G
Sbjct: 179 KVTKLLKDTCVLQFYPTLFVLVTDILDMLGNFVWDRIKRKAEFTEDG 225

[Close]

BLAST of CmUC03G059850 vs. TAIR 10
Match: AT1G50730.1 (unknown protein; Has 218 Blast hits to 209 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 2.5e-04
Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 141 NFEVAKLLKDVCVWQFYPILLVQVTDILDILGKLVWITSREK 183
           + +V KLL D  V +FYP + V VTD+LD+LG +VW   ++K
Sbjct: 168 SIKVTKLLMDTTVLRFYPTVFVIVTDMLDMLGDMVWERIKQK 209

The following BLAST results are available for this feature:

BLAST of CmUC03G059850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607792.1	8.2e-05	37.17	VPS35 endosomal protein sorting factor-like protein, partial [Cucurbita argyrosp...	[more]
KAG7037366.1	8.2e-05	37.17	hypothetical protein SDJN02_00991 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022940977.1	8.2e-05	37.17	UPF0505 protein C16orf62 homolog [Cucurbita moschata]	[more]
XP_023525123.1	1.1e-04	49.32	UPF0505 protein C16orf62 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_008447725.1	1.4e-04	57.14	PREDICTED: UPF0505 protein C16orf62 homolog isoform X1 [Cucumis melo]	[more]

BLAST of CmUC03G059850 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC03G059850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FL44	4.0e-05	37.17	UPF0505 protein C16orf62 homolog OS=Cucurbita moschata OX=3662 GN=LOC111446399 P...	[more]
A0A1S3BI26	6.8e-05	57.14	UPF0505 protein C16orf62 homolog isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490...	[more]
A0A5A7SG80	6.8e-05	57.14	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DHC0	6.8e-05	57.14	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A0A0K5F0	6.8e-05	59.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G212680 PE=3 SV=1	[more]

BLAST of CmUC03G059850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50730.1	2.5e-04	47.62	unknown protein; Has 218 Blast hits to 209 proteins in 78 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC03G059850.1	CmUC03G059850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0006810	transport
cellular_component	GO:0110165	cellular anatomical entity