Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAATCACCTGCTCTGTTTTACGCCTCCCGTTTCTTCATCTGCTCTACACTCATGGCTTCTTCCAAATCACTCACTCTCTTCCTTCCACTCTCAAACCTCAACCATCTCCACGGGTTTGCCTTTCGCAATTCACTCTCTTCCTTATCGCTTTGCAGATTCTCCACCACTTCAACCCCATTCCCCCTACAATACGAAATGATCATCAACCGACCTTATCCTCTGCCGCCCCATCAGAATGGACGAACACCCGCCAGAATCAGCTCCGACAACTCTCCCGAGCTCCACTCTTCCGAGGATTCCACTTCCGAATTGGGGTTCGAGAGCTGGATGGATCGGAAGCTTATATCCGAGAGTGAAGCTGTGTCCGGTAAGGAAGGCGTGGTCATGGATAAGGCCATGAGGAAATACTATAATAAAAGAAGGAAGAGGATGTATGGGTCTAATGAAGATGAAGATAATAAGACGCAGGACGAGGGATTTGCTTAA
mRNA sequence
ATGGCGAAATCACCTGCTCTGTTTTACGCCTCCCGTTTCTTCATCTGCTCTACACTCATGGCTTCTTCCAAATCACTCACTCTCTTCCTTCCACTCTCAAACCTCAACCATCTCCACGGGTTTGCCTTTCGCAATTCACTCTCTTCCTTATCGCTTTGCAGATTCTCCACCACTTCAACCCCATTCCCCCTACAATACGAAATGATCATCAACCGACCTTATCCTCTGCCGCCCCATCAGAATGGACGAACACCCGCCAGAATCAGCTCCGACAACTCTCCCGAGCTCCACTCTTCCGAGGATTCCACTTCCGAATTGGGGTTCGAGAGCTGGATGGATCGGAAGCTTATATCCGAGAGTGAAGCTGTGTCCGGTAAGGAAGGCGTGGTCATGGATAAGGCCATGAGGAAATACTATAATAAAAGAAGGAAGAGGATGTATGGGTCTAATGAAGATGAAGATAATAAGACGCAGGACGAGGGATTTGCTTAA
Coding sequence (CDS)
ATGGCGAAATCACCTGCTCTGTTTTACGCCTCCCGTTTCTTCATCTGCTCTACACTCATGGCTTCTTCCAAATCACTCACTCTCTTCCTTCCACTCTCAAACCTCAACCATCTCCACGGGTTTGCCTTTCGCAATTCACTCTCTTCCTTATCGCTTTGCAGATTCTCCACCACTTCAACCCCATTCCCCCTACAATACGAAATGATCATCAACCGACCTTATCCTCTGCCGCCCCATCAGAATGGACGAACACCCGCCAGAATCAGCTCCGACAACTCTCCCGAGCTCCACTCTTCCGAGGATTCCACTTCCGAATTGGGGTTCGAGAGCTGGATGGATCGGAAGCTTATATCCGAGAGTGAAGCTGTGTCCGGTAAGGAAGGCGTGGTCATGGATAAGGCCATGAGGAAATACTATAATAAAAGAAGGAAGAGGATGTATGGGTCTAATGAAGATGAAGATAATAAGACGCAGGACGAGGGATTTGCTTAA
Protein sequence
MAKSPALFYASRFFICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLSLCRFSTTSTPFPLQYEMIINRPYPLPPHQNGRTPARISSDNSPELHSSEDSTSELGFESWMDRKLISESEAVSGKEGVVMDKAMRKYYNKRRKRMYGSNEDEDNKTQDEGFA
Homology
BLAST of CmUC03G059500 vs. NCBI nr
Match:
KAA0037597.1 (TruB_N domain-containing protein [Cucumis melo var. makuwa] >TYK09336.1 TruB_N domain-containing protein [Cucumis melo var. makuwa])
HSP 1 Score: 251.1 bits (640), Expect = 6.4e-63
Identity = 137/163 (84.05%), Postives = 145/163 (88.96%), Query Frame = 0
Query: 1 MAKSPALFYASRFFICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLSLCRFSTTST 60
MAKSPALF+AS FFI STLM SSKSL LFLPLSNLNH H FAFRNSLS LSL RF TST
Sbjct: 1 MAKSPALFHASHFFIRSTLMPSSKSLYLFLPLSNLNHPHRFAFRNSLSPLSLRRF-CTST 60
Query: 61 PFPLQYEMIINRP-YPLPPHQNGRTPARISSDNSPELHSSEDSTSELGFESWMDRKLISE 120
PFPLQYE+IINRP YP PPHQN RTPARISSDN PEL+SSED +SELGF+SW+DRKLISE
Sbjct: 61 PFPLQYELIINRPSYPSPPHQNPRTPARISSDNPPELNSSEDPSSELGFDSWVDRKLISE 120
Query: 121 SEAVSGKEGVVMDKAMRKYYNKRRKRMYGSNEDEDNKTQDEGF 163
S VSGKEGVVMDKAMRKYYNKRRKRMYGS+ DEDN+TQDEGF
Sbjct: 121 SGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQDEGF 162
BLAST of CmUC03G059500 vs. NCBI nr
Match:
XP_008458830.1 (PREDICTED: uncharacterized protein LOC103498118 [Cucumis melo])
HSP 1 Score: 251.1 bits (640), Expect = 6.4e-63
Identity = 137/163 (84.05%), Postives = 145/163 (88.96%), Query Frame = 0
Query: 1 MAKSPALFYASRFFICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLSLCRFSTTST 60
MAKSPALF+AS FFI STLM SSKSL LFLPLSNLNH H FAFRNSLS LSL RF TST
Sbjct: 1 MAKSPALFHASHFFIRSTLMPSSKSLYLFLPLSNLNHPHRFAFRNSLSPLSLRRF-CTST 60
Query: 61 PFPLQYEMIINRP-YPLPPHQNGRTPARISSDNSPELHSSEDSTSELGFESWMDRKLISE 120
PFPLQYE+IINRP YP PPHQN RTPARISSDN PEL+SSED +SELGF+SW+DRKLISE
Sbjct: 61 PFPLQYELIINRPSYPSPPHQNPRTPARISSDNPPELNSSEDPSSELGFDSWVDRKLISE 120
Query: 121 SEAVSGKEGVVMDKAMRKYYNKRRKRMYGSNEDEDNKTQDEGF 163
S VSGKEGVVMDKAMRKYYNKRRKRMYGS+ DEDN+TQDEGF
Sbjct: 121 SGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQDEGF 162
BLAST of CmUC03G059500 vs. NCBI nr
Match:
XP_011655389.2 (uncharacterized protein LOC101215528 isoform X1 [Cucumis sativus] >KGN51348.1 hypothetical protein Csa_008523 [Cucumis sativus])
HSP 1 Score: 249.6 bits (636), Expect = 1.9e-62
Identity = 136/163 (83.44%), Postives = 145/163 (88.96%), Query Frame = 0
Query: 1 MAKSPALFYASRFFICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLSLCRFSTTST 60
MAKSPALF+AS FFI STLM SSKSL+LFLPLSNLNHLH FAFRNSLS LSL FSTT T
Sbjct: 16 MAKSPALFHASHFFIRSTLMPSSKSLSLFLPLSNLNHLHRFAFRNSLSPLSLRTFSTT-T 75
Query: 61 PFPLQYEMIINRP-YPLPPHQNGRTPARISSDNSPELHSSEDSTSELGFESWMDRKLISE 120
FPLQYE+IINRP YP PPHQN RTPAR+SSDNSPEL+SSED TSELGF+SW+DRKLISE
Sbjct: 76 LFPLQYELIINRPSYPSPPHQNPRTPARVSSDNSPELNSSEDPTSELGFDSWVDRKLISE 135
Query: 121 SEAVSGKEGVVMDKAMRKYYNKRRKRMYGSNEDEDNKTQDEGF 163
VSGKEGVVMDKAMRKYYNKRRKRMYGS+ DEDN+TQ EGF
Sbjct: 136 GGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQAEGF 177
BLAST of CmUC03G059500 vs. NCBI nr
Match:
XP_031741429.1 (uncharacterized protein LOC101215528 isoform X2 [Cucumis sativus])
HSP 1 Score: 249.6 bits (636), Expect = 1.9e-62
Identity = 136/163 (83.44%), Postives = 145/163 (88.96%), Query Frame = 0
Query: 1 MAKSPALFYASRFFICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLSLCRFSTTST 60
MAKSPALF+AS FFI STLM SSKSL+LFLPLSNLNHLH FAFRNSLS LSL FSTT T
Sbjct: 16 MAKSPALFHASHFFIRSTLMPSSKSLSLFLPLSNLNHLHRFAFRNSLSPLSLRTFSTT-T 75
Query: 61 PFPLQYEMIINRP-YPLPPHQNGRTPARISSDNSPELHSSEDSTSELGFESWMDRKLISE 120
FPLQYE+IINRP YP PPHQN RTPAR+SSDNSPEL+SSED TSELGF+SW+DRKLISE
Sbjct: 76 LFPLQYELIINRPSYPSPPHQNPRTPARVSSDNSPELNSSEDPTSELGFDSWVDRKLISE 135
Query: 121 SEAVSGKEGVVMDKAMRKYYNKRRKRMYGSNEDEDNKTQDEGF 163
VSGKEGVVMDKAMRKYYNKRRKRMYGS+ DEDN+TQ EGF
Sbjct: 136 GGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQAEGF 177
BLAST of CmUC03G059500 vs. NCBI nr
Match:
XP_038891059.1 (uncharacterized protein LOC120080471 [Benincasa hispida])
HSP 1 Score: 245.4 bits (625), Expect = 3.5e-61
Identity = 133/163 (81.60%), Postives = 139/163 (85.28%), Query Frame = 0
Query: 1 MAKSPALFYASRFFICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLSLCRFSTTST 60
M KS ALF+AS FFI ST M SS +LTLFL SNLNHLH FAFRNSLS LS R STTST
Sbjct: 1 MVKSSALFHASNFFIRSTFMPSSITLTLFLLPSNLNHLHRFAFRNSLSPLSPRRLSTTST 60
Query: 61 PFPLQYEMIINRP-YPLPPHQNGRTPARISSDNSPELHSSEDSTSELGFESWMDRKLISE 120
PFPLQYEMIINRP YP PPHQN RTP RI SDNSPE SSED TSE+GFESW+DRKLISE
Sbjct: 61 PFPLQYEMIINRPSYPPPPHQNRRTPTRIRSDNSPEFDSSEDPTSEMGFESWVDRKLISE 120
Query: 121 SEAVSGKEGVVMDKAMRKYYNKRRKRMYGSNEDEDNKTQDEGF 163
SE +SGKEGVVMDKAMRKYYNKRRKRMYGS+ DEDNKTQDEGF
Sbjct: 121 SETISGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNKTQDEGF 163
BLAST of CmUC03G059500 vs. ExPASy TrEMBL
Match:
A0A5A7T7S0 (TruB_N domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G00150 PE=3 SV=1)
HSP 1 Score: 251.1 bits (640), Expect = 3.1e-63
Identity = 137/163 (84.05%), Postives = 145/163 (88.96%), Query Frame = 0
Query: 1 MAKSPALFYASRFFICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLSLCRFSTTST 60
MAKSPALF+AS FFI STLM SSKSL LFLPLSNLNH H FAFRNSLS LSL RF TST
Sbjct: 1 MAKSPALFHASHFFIRSTLMPSSKSLYLFLPLSNLNHPHRFAFRNSLSPLSLRRF-CTST 60
Query: 61 PFPLQYEMIINRP-YPLPPHQNGRTPARISSDNSPELHSSEDSTSELGFESWMDRKLISE 120
PFPLQYE+IINRP YP PPHQN RTPARISSDN PEL+SSED +SELGF+SW+DRKLISE
Sbjct: 61 PFPLQYELIINRPSYPSPPHQNPRTPARISSDNPPELNSSEDPSSELGFDSWVDRKLISE 120
Query: 121 SEAVSGKEGVVMDKAMRKYYNKRRKRMYGSNEDEDNKTQDEGF 163
S VSGKEGVVMDKAMRKYYNKRRKRMYGS+ DEDN+TQDEGF
Sbjct: 121 SGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQDEGF 162
BLAST of CmUC03G059500 vs. ExPASy TrEMBL
Match:
A0A1S3C8B0 (uncharacterized protein LOC103498118 OS=Cucumis melo OX=3656 GN=LOC103498118 PE=3 SV=1)
HSP 1 Score: 251.1 bits (640), Expect = 3.1e-63
Identity = 137/163 (84.05%), Postives = 145/163 (88.96%), Query Frame = 0
Query: 1 MAKSPALFYASRFFICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLSLCRFSTTST 60
MAKSPALF+AS FFI STLM SSKSL LFLPLSNLNH H FAFRNSLS LSL RF TST
Sbjct: 1 MAKSPALFHASHFFIRSTLMPSSKSLYLFLPLSNLNHPHRFAFRNSLSPLSLRRF-CTST 60
Query: 61 PFPLQYEMIINRP-YPLPPHQNGRTPARISSDNSPELHSSEDSTSELGFESWMDRKLISE 120
PFPLQYE+IINRP YP PPHQN RTPARISSDN PEL+SSED +SELGF+SW+DRKLISE
Sbjct: 61 PFPLQYELIINRPSYPSPPHQNPRTPARISSDNPPELNSSEDPSSELGFDSWVDRKLISE 120
Query: 121 SEAVSGKEGVVMDKAMRKYYNKRRKRMYGSNEDEDNKTQDEGF 163
S VSGKEGVVMDKAMRKYYNKRRKRMYGS+ DEDN+TQDEGF
Sbjct: 121 SGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQDEGF 162
BLAST of CmUC03G059500 vs. ExPASy TrEMBL
Match:
A0A0A0KP03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G522940 PE=3 SV=1)
HSP 1 Score: 249.6 bits (636), Expect = 9.0e-63
Identity = 136/163 (83.44%), Postives = 145/163 (88.96%), Query Frame = 0
Query: 1 MAKSPALFYASRFFICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLSLCRFSTTST 60
MAKSPALF+AS FFI STLM SSKSL+LFLPLSNLNHLH FAFRNSLS LSL FSTT T
Sbjct: 16 MAKSPALFHASHFFIRSTLMPSSKSLSLFLPLSNLNHLHRFAFRNSLSPLSLRTFSTT-T 75
Query: 61 PFPLQYEMIINRP-YPLPPHQNGRTPARISSDNSPELHSSEDSTSELGFESWMDRKLISE 120
FPLQYE+IINRP YP PPHQN RTPAR+SSDNSPEL+SSED TSELGF+SW+DRKLISE
Sbjct: 76 LFPLQYELIINRPSYPSPPHQNPRTPARVSSDNSPELNSSEDPTSELGFDSWVDRKLISE 135
Query: 121 SEAVSGKEGVVMDKAMRKYYNKRRKRMYGSNEDEDNKTQDEGF 163
VSGKEGVVMDKAMRKYYNKRRKRMYGS+ DEDN+TQ EGF
Sbjct: 136 GGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQAEGF 177
BLAST of CmUC03G059500 vs. ExPASy TrEMBL
Match:
A0A6J1JSH8 (uncharacterized protein LOC111489372 OS=Cucurbita maxima OX=3661 GN=LOC111489372 PE=3 SV=1)
HSP 1 Score: 228.0 bits (580), Expect = 2.8e-56
Identity = 128/163 (78.53%), Postives = 135/163 (82.82%), Query Frame = 0
Query: 1 MAKSPALFYASRFFICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLSLCRFSTTST 60
MA SPAL +AS FFI STLMASSKSL F PLSNLNHLH F NSLS LSL R STTST
Sbjct: 1 MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLH--RFPNSLSLLSLRRSSTTST 60
Query: 61 PFPLQYEMIINRP-YPLPPHQNGRTPARISSDNSPELHSSEDSTSELGFESWMDRKLISE 120
PFPLQY+MIIN P YP P QN RTP RISSDNSPEL SSED SELGFESW+D+KLISE
Sbjct: 61 PFPLQYDMIINHPIYPPMPPQNRRTPPRISSDNSPELESSEDPVSELGFESWVDQKLISE 120
Query: 121 SEAVSGKEGVVMDKAMRKYYNKRRKRMYGSNEDEDNKTQDEGF 163
SE+ SGKEGVVMDKA RKYYNKRR+RMYGS+ DED KTQDEGF
Sbjct: 121 SESASGKEGVVMDKAKRKYYNKRRRRMYGSDSDEDKKTQDEGF 161
BLAST of CmUC03G059500 vs. ExPASy TrEMBL
Match:
A0A6J1FDZ7 (uncharacterized protein LOC111444875 OS=Cucurbita moschata OX=3662 GN=LOC111444875 PE=3 SV=1)
HSP 1 Score: 227.6 bits (579), Expect = 3.7e-56
Identity = 128/163 (78.53%), Postives = 136/163 (83.44%), Query Frame = 0
Query: 1 MAKSPALFYASRFFICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLSLCRFSTTST 60
MA SPAL +AS FFI STLMASSKSL F PLSNLNHLH F NSLS LSL R STTST
Sbjct: 1 MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLH--RFPNSLSLLSLRRSSTTST 60
Query: 61 PFPLQYEMIINRP-YPLPPHQNGRTPARISSDNSPELHSSEDSTSELGFESWMDRKLISE 120
PFPLQY+MII+RP YP P QN RTPARIS DNSPEL SSED SELGFESW+D+KLISE
Sbjct: 61 PFPLQYDMIIDRPIYPPMPPQNRRTPARISPDNSPELESSEDPVSELGFESWVDQKLISE 120
Query: 121 SEAVSGKEGVVMDKAMRKYYNKRRKRMYGSNEDEDNKTQDEGF 163
SE+ SGKEGVVMDKA RKYYNKRRKRMYGS+ DE+ KTQDEGF
Sbjct: 121 SESASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEEKKTQDEGF 161
BLAST of CmUC03G059500 vs. TAIR 10
Match:
AT5G14460.1 (Pseudouridine synthase family protein )
HSP 1 Score: 81.6 bits (200), Expect = 6.2e-16
Identity = 62/149 (41.61%), Postives = 87/149 (58.39%), Query Frame = 0
Query: 19 LMASSKSLTLFLPL--SNLNHLHGFAFRNSLSSLSLCRFSTTSTPFPLQYEMIINRPYPL 78
LM+SS +++ PL S++ + L+SL L STTST +PLQY+MIINRP
Sbjct: 10 LMSSSARMSMTSPLFFSSVKPWRNI-HKPYLASLFL---STTSTRYPLQYDMIINRPTQS 69
Query: 79 PPHQNGRTPARISSDNSPELHSSEDSTSELGFESWMDRKLISESE-AVSGKEGVVMDKAM 138
QN R P + +P+ ++E F+SW+D KL E E G MDKA
Sbjct: 70 SLSQNRRRPPKAIESGAPD-------SAEPEFDSWVDNKLAMEREQGRPGSGDPEMDKAK 129
Query: 139 RKYYNKRRKRMYGSNEDEDNKTQ--DEGF 163
RKYY+KRRKR+YGS+ +++N ++ DEGF
Sbjct: 130 RKYYSKRRKRLYGSDSEDENSSRKSDEGF 147
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0037597.1 | 6.4e-63 | 84.05 | TruB_N domain-containing protein [Cucumis melo var. makuwa] >TYK09336.1 TruB_N d... | [more] |
XP_008458830.1 | 6.4e-63 | 84.05 | PREDICTED: uncharacterized protein LOC103498118 [Cucumis melo] | [more] |
XP_011655389.2 | 1.9e-62 | 83.44 | uncharacterized protein LOC101215528 isoform X1 [Cucumis sativus] >KGN51348.1 hy... | [more] |
XP_031741429.1 | 1.9e-62 | 83.44 | uncharacterized protein LOC101215528 isoform X2 [Cucumis sativus] | [more] |
XP_038891059.1 | 3.5e-61 | 81.60 | uncharacterized protein LOC120080471 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7T7S0 | 3.1e-63 | 84.05 | TruB_N domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
A0A1S3C8B0 | 3.1e-63 | 84.05 | uncharacterized protein LOC103498118 OS=Cucumis melo OX=3656 GN=LOC103498118 PE=... | [more] |
A0A0A0KP03 | 9.0e-63 | 83.44 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G522940 PE=3 SV=1 | [more] |
A0A6J1JSH8 | 2.8e-56 | 78.53 | uncharacterized protein LOC111489372 OS=Cucurbita maxima OX=3661 GN=LOC111489372... | [more] |
A0A6J1FDZ7 | 3.7e-56 | 78.53 | uncharacterized protein LOC111444875 OS=Cucurbita moschata OX=3662 GN=LOC1114448... | [more] |
Match Name | E-value | Identity | Description | |
AT5G14460.1 | 6.2e-16 | 41.61 | Pseudouridine synthase family protein | [more] |