Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAACAACTTTTTAGCAGAATTGCACAGAGACTAGTAACCAGTATGGAAACAGTTCAGGGAGACCTTGAGAAAAAGTTTGGTATAGAACGGTTTAAAGCGCTGGGTGCTCAAGTGTTTGAAGGCACCACAAATCCTGCGGAAGCTGAAGCATGGTTAAATCAGGTAGAAAAATGTTTTAGAGTTATGCACTGTCCAGAAGACAGGAAACTTGACTTGGCCACGTTCATGCTCCAAAAAGGGGCTGAAGACTGGTGGCGATTGATAGAACACAGAAACACTGATGTGGGCTCCTTAACATGGGCAGATTTTAAGAAATCATTCCAGGAGAAGTACTATCCTAAATCCTTTTGTGAAGAGAAAAGGAAGGAATTCTTAAATTTAGTATAGGGAAGCATGTGTGTGGCGGAATATGAGAAGAAATTTACGGAGCTTGCCAAATATGCTTTGGCATTGATAGCAGAGGAAGCTGATAAGTGCAAGCGATTCGAGGAGGGCTTGCGCAGTGAAATCCGGACCCAGTGA
mRNA sequence
ATGGAAGAACAACTTTTTAGCAGAATTGCACAGAGACTAGTAACCAGTATGGAAACAGTTCAGGGAGACCTTGAGAAAAAGTTTGGTATAGAACGGTTTAAAGCGCTGGGTGCTCAAGTGTTTGAAGGCACCACAAATCCTGCGGAAGCTGAAGCATGGTTAAATCAGGTAGAAAAATGTTTTAGAGTTATGCACTGTCCAGAAGACAGGAAACTTGACTTGGCCACGTTCATGCTCCAAAAAGGGGCTGAAGACTGGTGGCGATTGATAGAACACAGAAACACTGATGGAAGCATGTGTGTGGCGGAATATGAGAAGAAATTTACGGAGCTTGCCAAATATGCTTTGGCATTGATAGCAGAGGAAGCTGATAAGTGCAAGCGATTCGAGGAGGGCTTGCGCAGTGAAATCCGGACCCAGTGA
Coding sequence (CDS)
ATGGAAGAACAACTTTTTAGCAGAATTGCACAGAGACTAGTAACCAGTATGGAAACAGTTCAGGGAGACCTTGAGAAAAAGTTTGGTATAGAACGGTTTAAAGCGCTGGGTGCTCAAGTGTTTGAAGGCACCACAAATCCTGCGGAAGCTGAAGCATGGTTAAATCAGGTAGAAAAATGTTTTAGAGTTATGCACTGTCCAGAAGACAGGAAACTTGACTTGGCCACGTTCATGCTCCAAAAAGGGGCTGAAGACTGGTGGCGATTGATAGAACACAGAAACACTGATGGAAGCATGTGTGTGGCGGAATATGAGAAGAAATTTACGGAGCTTGCCAAATATGCTTTGGCATTGATAGCAGAGGAAGCTGATAAGTGCAAGCGATTCGAGGAGGGCTTGCGCAGTGAAATCCGGACCCAGTGA
Protein sequence
MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKCFRVMHCPEDRKLDLATFMLQKGAEDWWRLIEHRNTDGSMCVAEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRTQ
Homology
BLAST of CmUC03G059220 vs. NCBI nr
Match:
KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 182.6 bits (462), Expect = 2.4e-42
Identity = 87/140 (62.14%), Postives = 106/140 (75.71%), Query Frame = 0
Query: 1 MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
+EEQL R+AQRLV+ + + Q D EKK+G ER KALGA F GTTNP + EAWL +EKC
Sbjct: 41 VEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKC 100
Query: 61 FRVMHCPEDRKLDLATFMLQKGAEDWWRLIE-HRNTDGSMCVAEYEKKFTELAKYALALI 120
FRV EDRK++LA F+LQ AEDWWR+ E R T G+M VAEYEKK+TEL+KYA +I
Sbjct: 101 FRVTRYLEDRKVELAAFLLQNDAEDWWRMEESRRRTTGTMTVAEYEKKYTELSKYATRVI 160
Query: 121 AEEADKCKRFEEGLRSEIRT 140
+E ++CKRFEEGLR EIRT
Sbjct: 161 VDEGERCKRFEEGLREEIRT 180
BLAST of CmUC03G059220 vs. NCBI nr
Match:
KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 180.6 bits (457), Expect = 9.1e-42
Identity = 88/147 (59.86%), Postives = 110/147 (74.83%), Query Frame = 0
Query: 1 MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
MEEQL R+AQRL++ + + Q D EKK+GIER KALGA F GTTNPA+AEAWL +EKC
Sbjct: 60 MEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC 119
Query: 61 FRVMHCPEDRKLDLATFMLQKG----AEDWWRLIEHR----NTDGSMCVAEYEKKFTELA 120
FRV CPEDRK++LA+F+LQ G EDWWR+ E R + SM V +YEKK+TEL+
Sbjct: 120 FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIRSMTVTKYEKKYTELS 179
Query: 121 KYALALIAEEADKCKRFEEGLRSEIRT 140
KYA +I +E ++CKRFEEGL+ EIRT
Sbjct: 180 KYATRVIEDEVERCKRFEEGLQEEIRT 206
BLAST of CmUC03G059220 vs. NCBI nr
Match:
XP_038890030.1 (uncharacterized protein LOC120079741 [Benincasa hispida])
HSP 1 Score: 171.4 bits (433), Expect = 5.5e-39
Identity = 88/174 (50.57%), Postives = 111/174 (63.79%), Query Frame = 0
Query: 1 MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
+E+ +F RI QRL S+ V+ +LEKK+ IERFKALGA FEGTT+P EAE WL+ VEKC
Sbjct: 17 LEDVVFYRIVQRLAASVGLVRANLEKKYDIERFKALGAVTFEGTTDPTEAELWLDVVEKC 76
Query: 61 FRVMHCPEDRKLDLATFMLQKGAEDWWRLIEHRN-------------------------- 120
F VM CPEDRK+ LATF+LQK AE WW++I R
Sbjct: 77 FNVMSCPEDRKVGLATFLLQKEAEKWWKVISVRRASTDAMLWPEFKKAIKDKYCPSSFRD 136
Query: 121 ---------TDGSMCVAEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRT 140
T G+M V EYE+KFTEL++YAL +IAEE D+C++FE+GLR EI+T
Sbjct: 137 AKRDEFLRLTQGTMSVVEYEQKFTELSQYALPIIAEEKDRCRKFEQGLRKEIKT 190
BLAST of CmUC03G059220 vs. NCBI nr
Match:
TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])
HSP 1 Score: 169.5 bits (428), Expect = 2.1e-38
Identity = 87/174 (50.00%), Postives = 106/174 (60.92%), Query Frame = 0
Query: 1 MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
+EEQL R+AQRLV+ + + Q D EKK+G ER KALGA F GTTNP + EAWL +EKC
Sbjct: 41 VEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKC 100
Query: 61 FRVMHCPEDRKLDLATFMLQKGAEDWWRLIEHRN-------------------------- 120
FRV EDRK++LA F+LQ AEDWWR+ E R
Sbjct: 101 FRVTRYLEDRKVELAAFLLQNDAEDWWRMEESRRRTTGDMSWDEFKKAFFDKFYPRSFRD 160
Query: 121 ---------TDGSMCVAEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRT 140
T G+M VAEYEKK+TEL+KYA +I +E ++CKRFEEGLR EIRT
Sbjct: 161 AKHNEFVRLTQGTMTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRT 214
BLAST of CmUC03G059220 vs. NCBI nr
Match:
KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 166.4 bits (420), Expect = 1.8e-37
Identity = 84/159 (52.83%), Postives = 99/159 (62.26%), Query Frame = 0
Query: 16 SMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKCFRVMHCPEDRKLDLA 75
S E+ Q D EKK+GIER KALGA F GTTNPA+AEAWL +EKCFRV CPEDRK++LA
Sbjct: 44 SGESTQSDPEKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELA 103
Query: 76 TFMLQKGAEDWWRLIEHRN-----------------------------------TDGSMC 135
F+LQ GAEDWWR+ E R T GSM
Sbjct: 104 AFLLQNGAEDWWRMEESRRRTTGDISWNEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMT 163
Query: 136 VAEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRT 140
+AEYEKK+TEL+ YA +I +E ++CKRFEEGLR EIRT
Sbjct: 164 IAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRT 202
BLAST of CmUC03G059220 vs. ExPASy TrEMBL
Match:
A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)
HSP 1 Score: 182.6 bits (462), Expect = 1.2e-42
Identity = 87/140 (62.14%), Postives = 106/140 (75.71%), Query Frame = 0
Query: 1 MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
+EEQL R+AQRLV+ + + Q D EKK+G ER KALGA F GTTNP + EAWL +EKC
Sbjct: 41 VEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKC 100
Query: 61 FRVMHCPEDRKLDLATFMLQKGAEDWWRLIE-HRNTDGSMCVAEYEKKFTELAKYALALI 120
FRV EDRK++LA F+LQ AEDWWR+ E R T G+M VAEYEKK+TEL+KYA +I
Sbjct: 101 FRVTRYLEDRKVELAAFLLQNDAEDWWRMEESRRRTTGTMTVAEYEKKYTELSKYATRVI 160
Query: 121 AEEADKCKRFEEGLRSEIRT 140
+E ++CKRFEEGLR EIRT
Sbjct: 161 VDEGERCKRFEEGLREEIRT 180
BLAST of CmUC03G059220 vs. ExPASy TrEMBL
Match:
A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)
HSP 1 Score: 180.6 bits (457), Expect = 4.4e-42
Identity = 88/147 (59.86%), Postives = 110/147 (74.83%), Query Frame = 0
Query: 1 MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
MEEQL R+AQRL++ + + Q D EKK+GIER KALGA F GTTNPA+AEAWL +EKC
Sbjct: 60 MEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC 119
Query: 61 FRVMHCPEDRKLDLATFMLQKG----AEDWWRLIEHR----NTDGSMCVAEYEKKFTELA 120
FRV CPEDRK++LA+F+LQ G EDWWR+ E R + SM V +YEKK+TEL+
Sbjct: 120 FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIRSMTVTKYEKKYTELS 179
Query: 121 KYALALIAEEADKCKRFEEGLRSEIRT 140
KYA +I +E ++CKRFEEGL+ EIRT
Sbjct: 180 KYATRVIEDEVERCKRFEEGLQEEIRT 206
BLAST of CmUC03G059220 vs. ExPASy TrEMBL
Match:
A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)
HSP 1 Score: 169.5 bits (428), Expect = 1.0e-38
Identity = 87/174 (50.00%), Postives = 106/174 (60.92%), Query Frame = 0
Query: 1 MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
+EEQL R+AQRLV+ + + Q D EKK+G ER KALGA F GTTNP + EAWL +EKC
Sbjct: 41 VEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKC 100
Query: 61 FRVMHCPEDRKLDLATFMLQKGAEDWWRLIEHRN-------------------------- 120
FRV EDRK++LA F+LQ AEDWWR+ E R
Sbjct: 101 FRVTRYLEDRKVELAAFLLQNDAEDWWRMEESRRRTTGDMSWDEFKKAFFDKFYPRSFRD 160
Query: 121 ---------TDGSMCVAEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRT 140
T G+M VAEYEKK+TEL+KYA +I +E ++CKRFEEGLR EIRT
Sbjct: 161 AKHNEFVRLTQGTMTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRT 214
BLAST of CmUC03G059220 vs. ExPASy TrEMBL
Match:
A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)
HSP 1 Score: 166.4 bits (420), Expect = 8.6e-38
Identity = 84/159 (52.83%), Postives = 99/159 (62.26%), Query Frame = 0
Query: 16 SMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKCFRVMHCPEDRKLDLA 75
S E+ Q D EKK+GIER KALGA F GTTNPA+AEAWL +EKCFRV CPEDRK++LA
Sbjct: 44 SGESTQSDPEKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELA 103
Query: 76 TFMLQKGAEDWWRLIEHRN-----------------------------------TDGSMC 135
F+LQ GAEDWWR+ E R T GSM
Sbjct: 104 AFLLQNGAEDWWRMEESRRRTTGDISWNEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMT 163
Query: 136 VAEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRT 140
+AEYEKK+TEL+ YA +I +E ++CKRFEEGLR EIRT
Sbjct: 164 IAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRT 202
BLAST of CmUC03G059220 vs. ExPASy TrEMBL
Match:
A0A5A7TBS0 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G002900 PE=4 SV=1)
HSP 1 Score: 160.2 bits (404), Expect = 6.2e-36
Identity = 82/159 (51.57%), Postives = 97/159 (61.01%), Query Frame = 0
Query: 16 SMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKCFRVMHCPEDRKLDLA 75
S E+ Q D +KK+GIER KALGA F GTTNP + EAWL +EKCFRV CPEDRK++LA
Sbjct: 138 SGESAQSDPKKKYGIERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRCPEDRKVELA 197
Query: 76 TFMLQKGAEDWWRLIEHRN-----------------------------------TDGSMC 135
F+LQ GAEDWWR+ E R T GSM
Sbjct: 198 AFLLQNGAEDWWRMEESRRRTTGDISWDEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMT 257
Query: 136 VAEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRT 140
VAEYEKK+TEL+KYA +I +E ++ KRFEEGLR EIRT
Sbjct: 258 VAEYEKKYTELSKYATRVIEDEVERYKRFEEGLREEIRT 296
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0036813.1 | 2.4e-42 | 62.14 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
KAA0035225.1 | 9.1e-42 | 59.86 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D... | [more] |
XP_038890030.1 | 5.5e-39 | 50.57 | uncharacterized protein LOC120079741 [Benincasa hispida] | [more] |
TYJ95881.1 | 2.1e-38 | 50.00 | retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa] | [more] |
KAA0060484.1 | 1.8e-37 | 52.83 | Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7T1M0 | 1.2e-42 | 62.14 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20... | [more] |
A0A5D3DES5 | 4.4e-42 | 59.86 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
A0A5D3BB91 | 1.0e-38 | 50.00 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... | [more] |
A0A5A7UZM6 | 8.6e-38 | 52.83 | Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... | [more] |
A0A5A7TBS0 | 6.2e-36 | 51.57 | CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... | [more] |
Match Name | E-value | Identity | Description | |