CmUC03G059220 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC03G059220
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Reverse transcriptase
Location	CmU531Chr03: 12477528 .. 12478055 (+)
RNA-Seq Expression	CmUC03G059220
Synteny	CmUC03G059220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAACAACTTTTTAGCAGAATTGCACAGAGACTAGTAACCAGTATGGAAACAGTTCAGGGAGACCTTGAGAAAAAGTTTGGTATAGAACGGTTTAAAGCGCTGGGTGCTCAAGTGTTTGAAGGCACCACAAATCCTGCGGAAGCTGAAGCATGGTTAAATCAGGTAGAAAAATGTTTTAGAGTTATGCACTGTCCAGAAGACAGGAAACTTGACTTGGCCACGTTCATGCTCCAAAAAGGGGCTGAAGACTGGTGGCGATTGATAGAACACAGAAACACTGATGTGGGCTCCTTAACATGGGCAGATTTTAAGAAATCATTCCAGGAGAAGTACTATCCTAAATCCTTTTGTGAAGAGAAAAGGAAGGAATTCTTAAATTTAGTATAGGGAAGCATGTGTGTGGCGGAATATGAGAAGAAATTTACGGAGCTTGCCAAATATGCTTTGGCATTGATAGCAGAGGAAGCTGATAAGTGCAAGCGATTCGAGGAGGGCTTGCGCAGTGAAATCCGGACCCAGTGA

mRNA sequence

ATGGAAGAACAACTTTTTAGCAGAATTGCACAGAGACTAGTAACCAGTATGGAAACAGTTCAGGGAGACCTTGAGAAAAAGTTTGGTATAGAACGGTTTAAAGCGCTGGGTGCTCAAGTGTTTGAAGGCACCACAAATCCTGCGGAAGCTGAAGCATGGTTAAATCAGGTAGAAAAATGTTTTAGAGTTATGCACTGTCCAGAAGACAGGAAACTTGACTTGGCCACGTTCATGCTCCAAAAAGGGGCTGAAGACTGGTGGCGATTGATAGAACACAGAAACACTGATGGAAGCATGTGTGTGGCGGAATATGAGAAGAAATTTACGGAGCTTGCCAAATATGCTTTGGCATTGATAGCAGAGGAAGCTGATAAGTGCAAGCGATTCGAGGAGGGCTTGCGCAGTGAAATCCGGACCCAGTGA

Coding sequence (CDS)

ATGGAAGAACAACTTTTTAGCAGAATTGCACAGAGACTAGTAACCAGTATGGAAACAGTTCAGGGAGACCTTGAGAAAAAGTTTGGTATAGAACGGTTTAAAGCGCTGGGTGCTCAAGTGTTTGAAGGCACCACAAATCCTGCGGAAGCTGAAGCATGGTTAAATCAGGTAGAAAAATGTTTTAGAGTTATGCACTGTCCAGAAGACAGGAAACTTGACTTGGCCACGTTCATGCTCCAAAAAGGGGCTGAAGACTGGTGGCGATTGATAGAACACAGAAACACTGATGGAAGCATGTGTGTGGCGGAATATGAGAAGAAATTTACGGAGCTTGCCAAATATGCTTTGGCATTGATAGCAGAGGAAGCTGATAAGTGCAAGCGATTCGAGGAGGGCTTGCGCAGTGAAATCCGGACCCAGTGA

Protein sequence

MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKCFRVMHCPEDRKLDLATFMLQKGAEDWWRLIEHRNTDGSMCVAEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRTQ

Homology

[Close]

BLAST of CmUC03G059220 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 182.6 bits (462), Expect = 2.4e-42
Identity = 87/140 (62.14%), Postives = 106/140 (75.71%), Query Frame = 0


Query: 1   MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
           +EEQL  R+AQRLV+ + + Q D EKK+G ER KALGA  F GTTNP + EAWL  +EKC
Sbjct: 41  VEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKC 100

Query: 61  FRVMHCPEDRKLDLATFMLQKGAEDWWRLIE-HRNTDGSMCVAEYEKKFTELAKYALALI 120
           FRV    EDRK++LA F+LQ  AEDWWR+ E  R T G+M VAEYEKK+TEL+KYA  +I
Sbjct: 101 FRVTRYLEDRKVELAAFLLQNDAEDWWRMEESRRRTTGTMTVAEYEKKYTELSKYATRVI 160

Query: 121 AEEADKCKRFEEGLRSEIRT 140
            +E ++CKRFEEGLR EIRT
Sbjct: 161 VDEGERCKRFEEGLREEIRT 180

[Close]

BLAST of CmUC03G059220 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 180.6 bits (457), Expect = 9.1e-42
Identity = 88/147 (59.86%), Postives = 110/147 (74.83%), Query Frame = 0


Query: 1   MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
           MEEQL  R+AQRL++ + + Q D EKK+GIER KALGA  F GTTNPA+AEAWL  +EKC
Sbjct: 60  MEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC 119

Query: 61  FRVMHCPEDRKLDLATFMLQKG----AEDWWRLIEHR----NTDGSMCVAEYEKKFTELA 120
           FRV  CPEDRK++LA+F+LQ G     EDWWR+ E R    +   SM V +YEKK+TEL+
Sbjct: 120 FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIRSMTVTKYEKKYTELS 179

Query: 121 KYALALIAEEADKCKRFEEGLRSEIRT 140
           KYA  +I +E ++CKRFEEGL+ EIRT
Sbjct: 180 KYATRVIEDEVERCKRFEEGLQEEIRT 206

[Close]

BLAST of CmUC03G059220 vs. NCBI nr
Match: XP_038890030.1 (uncharacterized protein LOC120079741 [Benincasa hispida])

HSP 1 Score: 171.4 bits (433), Expect = 5.5e-39
Identity = 88/174 (50.57%), Postives = 111/174 (63.79%), Query Frame = 0


Query: 1   MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
           +E+ +F RI QRL  S+  V+ +LEKK+ IERFKALGA  FEGTT+P EAE WL+ VEKC
Sbjct: 17  LEDVVFYRIVQRLAASVGLVRANLEKKYDIERFKALGAVTFEGTTDPTEAELWLDVVEKC 76

Query: 61  FRVMHCPEDRKLDLATFMLQKGAEDWWRLIEHRN-------------------------- 120
           F VM CPEDRK+ LATF+LQK AE WW++I  R                           
Sbjct: 77  FNVMSCPEDRKVGLATFLLQKEAEKWWKVISVRRASTDAMLWPEFKKAIKDKYCPSSFRD 136

Query: 121 ---------TDGSMCVAEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRT 140
                    T G+M V EYE+KFTEL++YAL +IAEE D+C++FE+GLR EI+T
Sbjct: 137 AKRDEFLRLTQGTMSVVEYEQKFTELSQYALPIIAEEKDRCRKFEQGLRKEIKT 190

[Close]

BLAST of CmUC03G059220 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 2.1e-38
Identity = 87/174 (50.00%), Postives = 106/174 (60.92%), Query Frame = 0


Query: 1   MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
           +EEQL  R+AQRLV+ + + Q D EKK+G ER KALGA  F GTTNP + EAWL  +EKC
Sbjct: 41  VEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKC 100

Query: 61  FRVMHCPEDRKLDLATFMLQKGAEDWWRLIEHRN-------------------------- 120
           FRV    EDRK++LA F+LQ  AEDWWR+ E R                           
Sbjct: 101 FRVTRYLEDRKVELAAFLLQNDAEDWWRMEESRRRTTGDMSWDEFKKAFFDKFYPRSFRD 160

Query: 121 ---------TDGSMCVAEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRT 140
                    T G+M VAEYEKK+TEL+KYA  +I +E ++CKRFEEGLR EIRT
Sbjct: 161 AKHNEFVRLTQGTMTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRT 214

[Close]

BLAST of CmUC03G059220 vs. NCBI nr
Match: KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-37
Identity = 84/159 (52.83%), Postives = 99/159 (62.26%), Query Frame = 0


Query: 16  SMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKCFRVMHCPEDRKLDLA 75
           S E+ Q D EKK+GIER KALGA  F GTTNPA+AEAWL  +EKCFRV  CPEDRK++LA
Sbjct: 44  SGESTQSDPEKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELA 103

Query: 76  TFMLQKGAEDWWRLIEHRN-----------------------------------TDGSMC 135
            F+LQ GAEDWWR+ E R                                    T GSM 
Sbjct: 104 AFLLQNGAEDWWRMEESRRRTTGDISWNEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMT 163

Query: 136 VAEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRT 140
           +AEYEKK+TEL+ YA  +I +E ++CKRFEEGLR EIRT
Sbjct: 164 IAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRT 202

[Close]

BLAST of CmUC03G059220 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.2e-42
Identity = 87/140 (62.14%), Postives = 106/140 (75.71%), Query Frame = 0


Query: 1   MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
           +EEQL  R+AQRLV+ + + Q D EKK+G ER KALGA  F GTTNP + EAWL  +EKC
Sbjct: 41  VEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKC 100

Query: 61  FRVMHCPEDRKLDLATFMLQKGAEDWWRLIE-HRNTDGSMCVAEYEKKFTELAKYALALI 120
           FRV    EDRK++LA F+LQ  AEDWWR+ E  R T G+M VAEYEKK+TEL+KYA  +I
Sbjct: 101 FRVTRYLEDRKVELAAFLLQNDAEDWWRMEESRRRTTGTMTVAEYEKKYTELSKYATRVI 160

Query: 121 AEEADKCKRFEEGLRSEIRT 140
            +E ++CKRFEEGLR EIRT
Sbjct: 161 VDEGERCKRFEEGLREEIRT 180

[Close]

BLAST of CmUC03G059220 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 4.4e-42
Identity = 88/147 (59.86%), Postives = 110/147 (74.83%), Query Frame = 0


Query: 1   MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
           MEEQL  R+AQRL++ + + Q D EKK+GIER KALGA  F GTTNPA+AEAWL  +EKC
Sbjct: 60  MEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC 119

Query: 61  FRVMHCPEDRKLDLATFMLQKG----AEDWWRLIEHR----NTDGSMCVAEYEKKFTELA 120
           FRV  CPEDRK++LA+F+LQ G     EDWWR+ E R    +   SM V +YEKK+TEL+
Sbjct: 120 FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIRSMTVTKYEKKYTELS 179

Query: 121 KYALALIAEEADKCKRFEEGLRSEIRT 140
           KYA  +I +E ++CKRFEEGL+ EIRT
Sbjct: 180 KYATRVIEDEVERCKRFEEGLQEEIRT 206

[Close]

BLAST of CmUC03G059220 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.0e-38
Identity = 87/174 (50.00%), Postives = 106/174 (60.92%), Query Frame = 0


Query: 1   MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
           +EEQL  R+AQRLV+ + + Q D EKK+G ER KALGA  F GTTNP + EAWL  +EKC
Sbjct: 41  VEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKC 100

Query: 61  FRVMHCPEDRKLDLATFMLQKGAEDWWRLIEHRN-------------------------- 120
           FRV    EDRK++LA F+LQ  AEDWWR+ E R                           
Sbjct: 101 FRVTRYLEDRKVELAAFLLQNDAEDWWRMEESRRRTTGDMSWDEFKKAFFDKFYPRSFRD 160

Query: 121 ---------TDGSMCVAEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRT 140
                    T G+M VAEYEKK+TEL+KYA  +I +E ++CKRFEEGLR EIRT
Sbjct: 161 AKHNEFVRLTQGTMTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRT 214

[Close]

BLAST of CmUC03G059220 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 8.6e-38
Identity = 84/159 (52.83%), Postives = 99/159 (62.26%), Query Frame = 0


Query: 16  SMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKCFRVMHCPEDRKLDLA 75
           S E+ Q D EKK+GIER KALGA  F GTTNPA+AEAWL  +EKCFRV  CPEDRK++LA
Sbjct: 44  SGESTQSDPEKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELA 103

Query: 76  TFMLQKGAEDWWRLIEHRN-----------------------------------TDGSMC 135
            F+LQ GAEDWWR+ E R                                    T GSM 
Sbjct: 104 AFLLQNGAEDWWRMEESRRRTTGDISWNEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMT 163

Query: 136 VAEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRT 140
           +AEYEKK+TEL+ YA  +I +E ++CKRFEEGLR EIRT
Sbjct: 164 IAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRT 202

[Close]

BLAST of CmUC03G059220 vs. ExPASy TrEMBL
Match: A0A5A7TBS0 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G002900 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 6.2e-36
Identity = 82/159 (51.57%), Postives = 97/159 (61.01%), Query Frame = 0


Query: 16  SMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKCFRVMHCPEDRKLDLA 75
           S E+ Q D +KK+GIER KALGA  F GTTNP + EAWL  +EKCFRV  CPEDRK++LA
Sbjct: 138 SGESAQSDPKKKYGIERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRCPEDRKVELA 197

Query: 76  TFMLQKGAEDWWRLIEHRN-----------------------------------TDGSMC 135
            F+LQ GAEDWWR+ E R                                    T GSM 
Sbjct: 198 AFLLQNGAEDWWRMEESRRRTTGDISWDEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMT 257

Query: 136 VAEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRT 140
           VAEYEKK+TEL+KYA  +I +E ++ KRFEEGLR EIRT
Sbjct: 258 VAEYEKKYTELSKYATRVIEDEVERYKRFEEGLREEIRT 296

The following BLAST results are available for this feature:

BLAST of CmUC03G059220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036813.1	2.4e-42	62.14	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0035225.1	9.1e-42	59.86	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D...	[more]
XP_038890030.1	5.5e-39	50.57	uncharacterized protein LOC120079741 [Benincasa hispida]	[more]
TYJ95881.1	2.1e-38	50.00	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]
KAA0060484.1	1.8e-37	52.83	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag...	[more]

BLAST of CmUC03G059220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC03G059220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T1M0	1.2e-42	62.14	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5D3DES5	4.4e-42	59.86	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BB91	1.0e-38	50.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UZM6	8.6e-38	52.83	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7TBS0	6.2e-36	51.57	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of CmUC03G059220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 48..139
None	No IPR available	PANTHER	PTHR34482:SF4	POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 48..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC03G059220.1	CmUC03G059220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding